Gene annotation
Transcriptome id Sobic.009G022200.1
Synonym serine/arginine-rich (SR) family, RSZ33, Sb09g001920, ATRSZ33, sb-RS2Z35
Functional annotation Putative splicing factor (PubMedID : 24356560)
splicing factor, arginine/serine-rich 7, putative, expressed
UniProt M1H563 , M1HAF9
Pfam PF00098 PF00076
Panther DB PTHR23147
NCBI CDD KOG0107; Alternative splicing factor SRp20/9G8 (RRM superfamily)
KEGG Orthology K12896; splicing factor, arginine/serine-rich 7
Gene Ontology GO:0008270; zinc ion binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT2G37340 : arginine/serine-rich zinc knuckle-containing protein 33
RAP-DB (Rice) LOC_Os05g02880.1 : splicing factor, arginine/serine-rich 7, putative, expressed
MaizeGDB (Corn) Zm00025a038218 , Zm00025a038217 , Zm00025a040795 , Zm00025a040794
Brachypodium KQK07787 , PNT71943 , PNT71942
Barley HORVU1Hr1G009950.10 , HORVU1Hr1G009950.11 , HORVU1Hr1G009950.12 , HORVU1Hr1G009950.15 , HORVU1Hr1G009950.2 , HORVU1Hr1G009950.3 , HORVU1Hr1G009950.1 , HORVU1Hr1G009950.6 , HORVU1Hr1G009950.7 , HORVU1Hr1G009950.4 , HORVU1Hr1G009950.5 , HORVU1Hr1G009950.8
Wheat TraesCS1B02G065900 , TraesCS1B02G065900 , TraesCS1D02G051900 , TraesCS1A02G049700 , TraesCS1A02G049700
Populus -


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cDNA sequences
Sobic.009G022200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G011400 armadillo/beta-catenin repeat family protein, putative, expressed -
2 Sobic.007G205800 chaperone protein dnaJ 10, putative, expressed -
3 Sobic.003G093600 methyltransferase, putative, expressed -
4 Sobic.008G034600 protein kinase PKN/PRK1, effector, putative, expressed -
5 Sobic.004G211400 Putative splicing factor(PubMedID : 24356560)@splicing factor, arginine/serine-rich 7, putative, expressed K12896: splicing factor, arginine/serine-rich 7
6 Sobic.009G087800 seven in absentia protein family domain containing protein, expressed K08742: E3 ubiquitin-protein ligase SIAH2
7 Sobic.004G271900 RMD5 homolog A, putative, expressed -
8 Sobic.008G116500 plus-3 domain containing protein, expressed K15178: RNA polymerase-associated protein RTF1
9 Sobic.003G258400 splicing factor-related, putative, expressed -
10 Sobic.002G313300 bromodomain domain containing protein, expressed -
11 Sobic.005G028400 "Ca ATPase, IIB type"(PubMedID : 22196357)@Autoihibited Ca2+ - ATPase 11(PubMedID : 26320239)@calcium-transporting ATPase, plasma membrane-type, putative, expressed K01537: P-type Ca2+ transporter type 2C
12 Sobic.001G424700 CAMK_CAMK_like_ULKh_APGy.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08269: ULK2, serine/threonine-protein kinase ULK2
13 Sobic.009G156000 arginyl-tRNA--protein transferase 1, putative, expressed K00685: arginyl-tRNA---protein transferase
14 Sobic.004G143700 protein phosphatase 2C, putative, expressed -
15 Sobic.002G049000 frigida, putative, expressed -
16 Sobic.004G256600 KH domain containing protein, putative, expressed K14945: protein quaking
17 Sobic.005G149500 palmitoyltransferase TIP1, putative, expressed K18932: palmitoyltransferase
18 Sobic.003G359300 ELM2 domain containing protein, putative, expressed -
19 Sobic.009G040700 "OsPPKL2(Ortholog in rice:Zhan et al., 2012)"(PubMedID : 31659919)@serine/threonine protein phosphatase, putative, expressed K01090: protein phosphatase
20 Sobic.006G145000 disease resistance RPP13-like protein 1, putative, expressed -


Gene co-expression network
sample Sobic009G022200 Sobic009G022200 Sobic007G011400 Sobic007G011400 Sobic009G022200--Sobic007G011400 Sobic007G205800 Sobic007G205800 Sobic009G022200--Sobic007G205800 Sobic003G093600 Sobic003G093600 Sobic009G022200--Sobic003G093600 Sobic008G034600 Sobic008G034600 Sobic009G022200--Sobic008G034600 Sobic004G211400 Sobic004G211400 Sobic009G022200--Sobic004G211400 Sobic009G087800 Sobic009G087800 Sobic009G022200--Sobic009G087800 Sobic004G271900 Sobic004G271900 Sobic009G022200--Sobic004G271900 Sobic008G116500 Sobic008G116500 Sobic009G022200--Sobic008G116500 Sobic003G258400 Sobic003G258400 Sobic009G022200--Sobic003G258400 Sobic001G094000 Sobic001G094000 Sobic007G011400--Sobic001G094000 Sobic007G011400--Sobic007G205800 Sobic002G157300 Sobic002G157300 Sobic007G011400--Sobic002G157300 Sobic010G263800 Sobic010G263800 Sobic007G011400--Sobic010G263800 Sobic002G313300 Sobic002G313300 Sobic007G011400--Sobic002G313300 Sobic009G040700 Sobic009G040700 Sobic007G011400--Sobic009G040700 Sobic002G157000 Sobic002G157000 Sobic007G011400--Sobic002G157000 Sobic001G162300 Sobic001G162300 Sobic007G011400--Sobic001G162300 Sobic007G011400--Sobic008G034600 Sobic007G205800--Sobic007G011400 Sobic007G205800--Sobic009G087800 Sobic007G205800--Sobic010G263800 Sobic007G205800--Sobic008G034600 Sobic007G205800--Sobic004G271900 Sobic007G205800--Sobic009G022200 Sobic007G205800--Sobic003G093600 Sobic007G205800--Sobic003G258400 Sobic002G077200 Sobic002G077200 Sobic007G205800--Sobic002G077200 Sobic007G023700 Sobic007G023700 Sobic003G093600--Sobic007G023700 Sobic003G093600--Sobic009G022200 Sobic003G093600--Sobic004G271900 Sobic003G093600--Sobic007G205800 Sobic004G143700 Sobic004G143700 Sobic003G093600--Sobic004G143700 Sobic009G156000 Sobic009G156000 Sobic003G093600--Sobic009G156000 Sobic003G093600--Sobic009G087800 Sobic003G093600--Sobic003G258400 Sobic001G424700 Sobic001G424700 Sobic003G093600--Sobic001G424700 Sobic008G034600--Sobic007G205800 Sobic008G034600--Sobic007G011400 Sobic008G034600--Sobic010G263800 Sobic008G034600--Sobic004G271900 Sobic008G117200 Sobic008G117200 Sobic008G034600--Sobic008G117200 Sobic002G421700 Sobic002G421700 Sobic008G034600--Sobic002G421700 Sobic008G034600--Sobic009G022200 Sobic007G224900 Sobic007G224900 Sobic008G034600--Sobic007G224900 Sobic003G346000 Sobic003G346000 Sobic008G034600--Sobic003G346000 Sobic004G211400--Sobic008G034600 Sobic004G211400--Sobic009G022200 Sobic004G211400--Sobic007G205800 Sobic002G157200 Sobic002G157200 Sobic004G211400--Sobic002G157200 Sobic004G211400--Sobic007G224900 Sobic006G191400 Sobic006G191400 Sobic004G211400--Sobic006G191400 Sobic004G211400--Sobic003G258400 Sobic008G136200 Sobic008G136200 Sobic004G211400--Sobic008G136200 Sobic001G428400 Sobic001G428400 Sobic004G211400--Sobic001G428400 Sobic009G087800--Sobic007G205800 Sobic009G087800--Sobic003G258400 Sobic009G087800--Sobic007G011400 Sobic009G087800--Sobic003G093600 Sobic009G087800--Sobic004G271900 Sobic009G087800--Sobic010G263800 Sobic010G026400 Sobic010G026400 Sobic009G087800--Sobic010G026400 Sobic009G087800--Sobic001G424700 Sobic009G198900 Sobic009G198900 Sobic009G087800--Sobic009G198900 Sobic009G117400 Sobic009G117400 Sobic004G271900--Sobic009G117400 Sobic004G271900--Sobic007G205800 Sobic004G271900--Sobic008G034600 Sobic004G271900--Sobic010G263800 Sobic004G271900--Sobic003G093600 Sobic004G256600 Sobic004G256600 Sobic004G271900--Sobic004G256600 Sobic004G271900--Sobic007G011400 Sobic004G271900--Sobic003G258400 Sobic009G117300 Sobic009G117300 Sobic004G271900--Sobic009G117300 Sobic002G001600 Sobic002G001600 Sobic008G116500--Sobic002G001600 Sobic001G543900 Sobic001G543900 Sobic008G116500--Sobic001G543900 Sobic008G116500--Sobic007G011400 Sobic001G439500 Sobic001G439500 Sobic008G116500--Sobic001G439500 Sobic006G080300 Sobic006G080300 Sobic008G116500--Sobic006G080300 Sobic007G037100 Sobic007G037100 Sobic008G116500--Sobic007G037100 Sobic008G116500--Sobic002G313300 Sobic001G477800 Sobic001G477800 Sobic008G116500--Sobic001G477800 Sobic004G196700 Sobic004G196700 Sobic008G116500--Sobic004G196700 Sobic003G258400--Sobic002G077200 Sobic003G258400--Sobic004G256600 Sobic003G258400--Sobic009G087800 Sobic009G231300 Sobic009G231300 Sobic003G258400--Sobic009G231300 Sobic009G180200 Sobic009G180200 Sobic003G258400--Sobic009G180200 Sobic003G258400--Sobic004G271900 Sobic003G258400--Sobic007G205800 Sobic003G258400--Sobic003G093600 Sobic009G110366 Sobic009G110366 Sobic003G258400--Sobic009G110366
Octagon: transcription factors


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