Gene annotation
Transcriptome id Sobic.004G256600.1
Synonym Sb04g029520
Functional annotation KH domain containing protein, putative, expressed
UniProt C5XZS7
Pfam PF16544
Panther DB PTHR11208
NCBI CDD KOG1588; RNA-binding protein Sam68 and related KH domain proteins
KEGG Orthology K14945; protein quaking
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G56140 : RNA-binding KH domain-containing protein
RAP-DB (Rice) LOC_Os02g49080.1 : KH domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a032554 , Zm00025a021863
Brachypodium KQK01536 , KQK01537 , KQK01538
Barley HORVU6Hr1G071890.7 , HORVU6Hr1G071890.6 , HORVU6Hr1G071890.5 , HORVU6Hr1G071890.4 , HORVU6Hr1G071890.3 , HORVU6Hr1G071890.2 , HORVU6Hr1G071890.1 , HORVU6Hr1G071890.9 , HORVU6Hr1G071890.8 , HORVU6Hr1G071890.14 , HORVU6Hr1G071890.13 , HORVU6Hr1G071890.12 , HORVU6Hr1G071890.11 , HORVU6Hr1G071890.10
Wheat TraesCS6B02G314700 , TraesCS6B02G314700 , TraesCS6D02G266300 , TraesCS6D02G266300 , TraesCS6D02G266300 , TraesCS6A02G285900 , TraesCS6A02G285900 , TraesCS6A02G285900
Populus -


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cDNA sequences
Sobic.004G256600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G258400 splicing factor-related, putative, expressed -
2 Sobic.004G271900 RMD5 homolog A, putative, expressed -
3 Sobic.010G263800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein(PubMedID : 28640841)@UPF0183 protein, putative, expressed -
4 Sobic.009G040700 "OsPPKL2(Ortholog in rice:Zhan et al., 2012)"(PubMedID : 31659919)@serine/threonine protein phosphatase, putative, expressed K01090: protein phosphatase
5 Sobic.005G187200 expressed protein -
6 Sobic.006G009400 G-patch domain containing protein, expressed -
7 Sobic.009G231300 drought induced 19 protein, putative, expressed -
8 Sobic.009G117400 protein kinase domain containing protein, expressed -
9 Sobic.002G077200 expressed protein -
10 Sobic.002G313300 bromodomain domain containing protein, expressed -
11 Sobic.009G087800 seven in absentia protein family domain containing protein, expressed K08742: E3 ubiquitin-protein ligase SIAH2
12 Sobic.009G156000 arginyl-tRNA--protein transferase 1, putative, expressed K00685: arginyl-tRNA---protein transferase
13 Sobic.002G051450 - -
14 Sobic.007G205800 chaperone protein dnaJ 10, putative, expressed -
15 Sobic.001G543800 ethylene-responsive element-binding protein, putative, expressed -
16 Sobic.001G347600 paramyosin, putative, expressed -
17 Sobic.007G011400 armadillo/beta-catenin repeat family protein, putative, expressed -
18 Sobic.006G145000 disease resistance RPP13-like protein 1, putative, expressed -
19 Sobic.006G128900 cyclin-dependent kinase G-2, putative, expressed K08818: cell division cycle 2-like
20 Sobic.001G498200 YT521-B-like family domain containing protein, expressed -


Gene co-expression network
sample Sobic004G256600 Sobic004G256600 Sobic003G258400 Sobic003G258400 Sobic004G256600--Sobic003G258400 Sobic004G271900 Sobic004G271900 Sobic004G256600--Sobic004G271900 Sobic010G263800 Sobic010G263800 Sobic004G256600--Sobic010G263800 Sobic009G040700 Sobic009G040700 Sobic004G256600--Sobic009G040700 Sobic005G187200 Sobic005G187200 Sobic004G256600--Sobic005G187200 Sobic006G009400 Sobic006G009400 Sobic004G256600--Sobic006G009400 Sobic009G231300 Sobic009G231300 Sobic004G256600--Sobic009G231300 Sobic009G117400 Sobic009G117400 Sobic004G256600--Sobic009G117400 Sobic002G077200 Sobic002G077200 Sobic004G256600--Sobic002G077200 Sobic003G258400--Sobic002G077200 Sobic003G258400--Sobic004G256600 Sobic009G087800 Sobic009G087800 Sobic003G258400--Sobic009G087800 Sobic003G258400--Sobic009G231300 Sobic009G180200 Sobic009G180200 Sobic003G258400--Sobic009G180200 Sobic003G258400--Sobic004G271900 Sobic007G205800 Sobic007G205800 Sobic003G258400--Sobic007G205800 Sobic003G093600 Sobic003G093600 Sobic003G258400--Sobic003G093600 Sobic009G110366 Sobic009G110366 Sobic003G258400--Sobic009G110366 Sobic004G271900--Sobic009G117400 Sobic004G271900--Sobic007G205800 Sobic008G034600 Sobic008G034600 Sobic004G271900--Sobic008G034600 Sobic004G271900--Sobic010G263800 Sobic004G271900--Sobic003G093600 Sobic004G271900--Sobic004G256600 Sobic007G011400 Sobic007G011400 Sobic004G271900--Sobic007G011400 Sobic004G271900--Sobic003G258400 Sobic009G117300 Sobic009G117300 Sobic004G271900--Sobic009G117300 Sobic010G263800--Sobic006G009400 Sobic010G263800--Sobic007G011400 Sobic010G263800--Sobic002G077200 Sobic002G313300 Sobic002G313300 Sobic010G263800--Sobic002G313300 Sobic002G157300 Sobic002G157300 Sobic010G263800--Sobic002G157300 Sobic010G263800--Sobic007G205800 Sobic010G263800--Sobic009G117400 Sobic001G347600 Sobic001G347600 Sobic010G263800--Sobic001G347600 Sobic010G263800--Sobic008G034600 Sobic001G094000 Sobic001G094000 Sobic009G040700--Sobic001G094000 Sobic003G187400 Sobic003G187400 Sobic009G040700--Sobic003G187400 Sobic005G149500 Sobic005G149500 Sobic009G040700--Sobic005G149500 Sobic009G040700--Sobic007G011400 Sobic009G040700--Sobic002G157300 Sobic001G477800 Sobic001G477800 Sobic009G040700--Sobic001G477800 Sobic006G145000 Sobic006G145000 Sobic009G040700--Sobic006G145000 Sobic004G196700 Sobic004G196700 Sobic009G040700--Sobic004G196700 Sobic008G078100 Sobic008G078100 Sobic009G040700--Sobic008G078100 Sobic005G187200--Sobic010G263800 Sobic005G187200--Sobic004G271900 Sobic001G479500 Sobic001G479500 Sobic005G187200--Sobic001G479500 Sobic005G187200--Sobic004G256600 Sobic005G187200--Sobic007G205800 Sobic005G187200--Sobic007G011400 Sobic005G187200--Sobic002G077200 Sobic009G134500 Sobic009G134500 Sobic005G187200--Sobic009G134500 Sobic001G194900 Sobic001G194900 Sobic005G187200--Sobic001G194900 Sobic006G009400--Sobic010G263800 Sobic005G055150 Sobic005G055150 Sobic006G009400--Sobic005G055150 Sobic006G009400--Sobic002G313300 Sobic001G543900 Sobic001G543900 Sobic006G009400--Sobic001G543900 Sobic005G110427 Sobic005G110427 Sobic006G009400--Sobic005G110427 Sobic006G009400--Sobic001G477800 Sobic007G073400 Sobic007G073400 Sobic006G009400--Sobic007G073400 Sobic007G178700 Sobic007G178700 Sobic006G009400--Sobic007G178700 Sobic006G262200 Sobic006G262200 Sobic006G009400--Sobic006G262200 Sobic005G130100 Sobic005G130100 Sobic009G231300--Sobic005G130100 Sobic009G231300--Sobic009G180200 Sobic009G109450 Sobic009G109450 Sobic009G231300--Sobic009G109450 Sobic009G078500 Sobic009G078500 Sobic009G231300--Sobic009G078500 Sobic007G156500 Sobic007G156500 Sobic009G231300--Sobic007G156500 Sobic005G003200 Sobic005G003200 Sobic009G231300--Sobic005G003200 Sobic009G231300--Sobic003G258400 Sobic004G199600 Sobic004G199600 Sobic009G231300--Sobic004G199600 Sobic010G050600 Sobic010G050600 Sobic009G231300--Sobic010G050600 Sobic009G117400--Sobic009G117300 Sobic009G117400--Sobic004G271900 Sobic009G117400--Sobic010G263800 Sobic009G117400--Sobic007G205800 Sobic009G117400--Sobic004G256600 Sobic009G117400--Sobic008G034600 Sobic009G117400--Sobic001G347600 Sobic004G057400 Sobic004G057400 Sobic009G117400--Sobic004G057400 Sobic006G209500 Sobic006G209500 Sobic009G117400--Sobic006G209500 Sobic002G077200--Sobic002G313300 Sobic002G077200--Sobic010G263800 Sobic002G077200--Sobic003G258400 Sobic002G077200--Sobic007G205800 Sobic002G077200--Sobic006G009400 Sobic002G077200--Sobic009G231300 Sobic002G077200--Sobic001G477800 Sobic002G077200--Sobic005G187200 Sobic002G077200--Sobic001G543900
Octagon: transcription factors


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