Gene annotation
Transcriptome id Sobic.009G156000.2,Sobic.009G156000.3,Sobic.009G156000.1
Synonym ATATE2, Sb09g021940, ATE2
Functional annotation arginyl-tRNA--protein transferase 1, putative, expressed
UniProt A0A109ND79 , C5YYU0 , A0A1Z5R2U8 , A0A1Z5R3K2
Pfam PF04376 PF04377 PF04377
Panther DB PTHR21367 PTHR21367:SF1
NCBI CDD KOG1193; Arginyl-tRNA-protein transferase
KEGG Orthology K00685; arginyl-tRNA---protein transferase
Gene Ontology GO:0016598; protein arginylation GO:0004057arginyltransferase activity


Orthologs (automatic annotation)
TAIR AT3G11240 : arginine-tRNA protein transferase 2
RAP-DB (Rice) LOC_Os05g37434.1 : arginyl-tRNA--protein transferase 1, putative, expressed
MaizeGDB (Corn) Zm00025a037240
Brachypodium KQK05990 , KQK05989
Barley HORVU1Hr1G073500.1 , HORVU1Hr1G073500.2 , HORVU1Hr1G073500.3 , HORVU1Hr1G073500.4 , HORVU1Hr1G073500.5 , HORVU1Hr1G073500.6
Wheat TraesCS1B02G287000 , TraesCS1A02G278100 , TraesCS1A02G278100 , TraesCS1A02G278100 , TraesCS1D02G277200 , TraesCS1D02G277200 , TraesCS1D02G277200
Populus -


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cDNA sequences
Sobic.009G156000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G283300 protein kinase family protein, putative, expressed -
2 Sobic.005G028400 "Ca ATPase, IIB type"(PubMedID : 22196357)@Autoihibited Ca2+ - ATPase 11(PubMedID : 26320239)@calcium-transporting ATPase, plasma membrane-type, putative, expressed K01537: P-type Ca2+ transporter type 2C
3 Sobic.003G093600 methyltransferase, putative, expressed -
4 Sobic.008G161401 - -
5 Sobic.005G130200 - -
6 Sobic.002G165300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K11111: TERF2, telomeric repeat-binding factor 2
7 Sobic.001G479500 dihydroflavonol-4-reductase, putative, expressed K15891: NAD+-dependent farnesol dehydrogenase
8 Sobic.010G248200 KID-containing protein, putative, expressed -
9 Sobic.004G143700 protein phosphatase 2C, putative, expressed -
10 Sobic.010G263800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein(PubMedID : 28640841)@UPF0183 protein, putative, expressed -
11 Sobic.006G009400 G-patch domain containing protein, expressed -
12 Sobic.001G543900 H(+)-ATPase 7(PubMedID : 26320239)@E1-E2 ATPase domain containing protein, expressed K01535: PMA1, H+-transporting ATPase
13 Sobic.007G073400 SHR5-receptor-like kinase, putative, expressed -
14 Sobic.K016900 arginyl-tRNA--protein transferase 1, putative, expressed -
15 Sobic.007G211000 helix-loop-helix DNA-binding domain containing protein, expressed -
16 Sobic.007G011400 armadillo/beta-catenin repeat family protein, putative, expressed -
17 Sobic.003G258400 splicing factor-related, putative, expressed -
18 Sobic.002G077200 expressed protein -
19 Sobic.002G313300 bromodomain domain containing protein, expressed -
20 Sobic.010G026400 BUD13, putative, expressed K13106: BUD13, pre-mRNA-splicing factor CWC26


Gene co-expression network
sample Sobic009G156000 Sobic009G156000 Sobic002G283300 Sobic002G283300 Sobic009G156000--Sobic002G283300 Sobic005G028400 Sobic005G028400 Sobic009G156000--Sobic005G028400 Sobic003G093600 Sobic003G093600 Sobic009G156000--Sobic003G093600 Sobic008G161401 Sobic008G161401 Sobic009G156000--Sobic008G161401 Sobic005G130200 Sobic005G130200 Sobic009G156000--Sobic005G130200 Sobic002G165300 Sobic002G165300 Sobic009G156000--Sobic002G165300 Sobic001G479500 Sobic001G479500 Sobic009G156000--Sobic001G479500 Sobic010G248200 Sobic010G248200 Sobic009G156000--Sobic010G248200 Sobic004G143700 Sobic004G143700 Sobic009G156000--Sobic004G143700 Sobic002G283300--Sobic009G156000 Sobic010G263800 Sobic010G263800 Sobic002G283300--Sobic010G263800 Sobic004G212800 Sobic004G212800 Sobic002G283300--Sobic004G212800 Sobic002G283300--Sobic004G143700 Sobic006G009400 Sobic006G009400 Sobic002G283300--Sobic006G009400 SobicK016900 SobicK016900 Sobic002G283300--SobicK016900 Sobic001G287301 Sobic001G287301 Sobic002G283300--Sobic001G287301 Sobic002G283300--Sobic010G248200 Sobic002G283300--Sobic005G130200 Sobic005G028400--Sobic009G156000 Sobic005G028400--Sobic008G161401 Sobic007G073400 Sobic007G073400 Sobic005G028400--Sobic007G073400 Sobic007G211000 Sobic007G211000 Sobic005G028400--Sobic007G211000 Sobic005G028400--Sobic001G479500 Sobic007G205800 Sobic007G205800 Sobic005G028400--Sobic007G205800 Sobic005G028400--Sobic004G143700 Sobic005G028400--Sobic006G009400 Sobic009G183200 Sobic009G183200 Sobic005G028400--Sobic009G183200 Sobic007G023700 Sobic007G023700 Sobic003G093600--Sobic007G023700 Sobic009G022200 Sobic009G022200 Sobic003G093600--Sobic009G022200 Sobic004G271900 Sobic004G271900 Sobic003G093600--Sobic004G271900 Sobic003G093600--Sobic007G205800 Sobic003G093600--Sobic004G143700 Sobic003G093600--Sobic009G156000 Sobic009G087800 Sobic009G087800 Sobic003G093600--Sobic009G087800 Sobic003G258400 Sobic003G258400 Sobic003G093600--Sobic003G258400 Sobic001G424700 Sobic001G424700 Sobic003G093600--Sobic001G424700 Sobic008G161401--Sobic010G248200 Sobic008G161401--Sobic004G212800 Sobic008G161401--Sobic007G073400 Sobic008G161401--Sobic005G130200 Sobic003G057800 Sobic003G057800 Sobic008G161401--Sobic003G057800 Sobic003G357500 Sobic003G357500 Sobic008G161401--Sobic003G357500 Sobic008G161401--Sobic009G156000 Sobic002G108800 Sobic002G108800 Sobic008G161401--Sobic002G108800 Sobic008G161401--Sobic001G479500 Sobic005G130200--Sobic010G248200 Sobic005G130200--Sobic001G479500 Sobic001G543900 Sobic001G543900 Sobic005G130200--Sobic001G543900 Sobic005G130200--Sobic008G161401 Sobic005G130200--Sobic009G156000 Sobic005G130200--Sobic002G283300 Sobic005G130200--Sobic004G212800 Sobic005G130200--Sobic003G057800 Sobic001G477800 Sobic001G477800 Sobic005G130200--Sobic001G477800 Sobic002G165300--Sobic009G156000 Sobic004G196700 Sobic004G196700 Sobic002G165300--Sobic004G196700 Sobic005G149500 Sobic005G149500 Sobic002G165300--Sobic005G149500 Sobic002G165300--Sobic007G211000 Sobic010G199600 Sobic010G199600 Sobic002G165300--Sobic010G199600 Sobic007G078000 Sobic007G078000 Sobic002G165300--Sobic007G078000 Sobic002G284200 Sobic002G284200 Sobic002G165300--Sobic002G284200 Sobic010G026400 Sobic010G026400 Sobic002G165300--Sobic010G026400 Sobic007G037100 Sobic007G037100 Sobic002G165300--Sobic007G037100 Sobic001G479500--Sobic003G057800 Sobic001G479500--Sobic005G130200 Sobic001G479500--Sobic010G248200 Sobic001G479500--Sobic008G161401 Sobic001G479500--Sobic009G156000 Sobic001G479500--Sobic001G543900 Sobic005G187200 Sobic005G187200 Sobic001G479500--Sobic005G187200 Sobic001G479500--Sobic002G283300 Sobic001G479500--Sobic004G212800 Sobic002G007250 Sobic002G007250 Sobic010G248200--Sobic002G007250 Sobic001G345333 Sobic001G345333 Sobic010G248200--Sobic001G345333 Sobic010G248200--Sobic004G212800 Sobic010G248200--Sobic005G130200 Sobic002G253500 Sobic002G253500 Sobic010G248200--Sobic002G253500 Sobic010G248200--Sobic008G161401 Sobic010G248200--Sobic002G108800 Sobic001G243901 Sobic001G243901 Sobic010G248200--Sobic001G243901 Sobic010G218500 Sobic010G218500 Sobic010G248200--Sobic010G218500 Sobic004G143700--Sobic007G073400 Sobic004G143700--Sobic007G023700 Sobic004G143700--Sobic004G212800 Sobic004G143700--Sobic002G283300 Sobic004G143700--Sobic010G248200 Sobic001G024200 Sobic001G024200 Sobic004G143700--Sobic001G024200 Sobic004G143700--Sobic003G093600 Sobic001G439500 Sobic001G439500 Sobic004G143700--Sobic001G439500 Sobic004G143700--Sobic001G543900
Octagon: transcription factors


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