Gene annotation
Transcriptome id Sobic.K016900.3,Sobic.K016900.2
Synonym ATATE2, Sb0176s002010, ATE2
Functional annotation arginyl-tRNA--protein transferase 1, putative, expressed
UniProt C6JS96 , A0A1W0VQT5
Pfam PF04377
Panther DB PTHR21367 PTHR21367:SF1
NCBI CDD KOG1193; Arginyl-tRNA-protein transferase
KEGG Orthology -
Gene Ontology GO:0016598; protein arginylation GO:0004057arginyltransferase activity


Orthologs (automatic annotation)
TAIR AT3G11240 : arginine-tRNA protein transferase 2
RAP-DB (Rice) LOC_Os05g37434.1 : arginyl-tRNA--protein transferase 1, putative, expressed
MaizeGDB (Corn) Zm00025a037240
Brachypodium KQK05990 , KQK05989
Barley HORVU1Hr1G073500.1 , HORVU1Hr1G073500.2 , HORVU1Hr1G073500.3 , HORVU1Hr1G073500.4 , HORVU1Hr1G073500.5 , HORVU1Hr1G073500.6
Wheat TraesCS1A02G278100 , TraesCS1A02G278100 , TraesCS1A02G278100 , TraesCS1B02G287000 , TraesCS1D02G277200 , TraesCS1D02G277200 , TraesCS1D02G277200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G283300 protein kinase family protein, putative, expressed -
2 Sobic.009G156000 arginyl-tRNA--protein transferase 1, putative, expressed K00685: arginyl-tRNA---protein transferase
3 Sobic.004G143700 protein phosphatase 2C, putative, expressed -
4 Sobic.007G211000 helix-loop-helix DNA-binding domain containing protein, expressed -
5 Sobic.003G393300 two-component response regulator, putative, expressed K14491: two-component response regulator ARR-B family
6 Sobic.001G347600 paramyosin, putative, expressed -
7 Sobic.002G115801 - -
8 Sobic.005G167300 BTBT3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with tetratricopeptide repeats, expressed -
9 Sobic.003G044900 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by IAA treatment"(PubMedID : 20499123)@OsIAA1 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
10 Sobic.007G073400 SHR5-receptor-like kinase, putative, expressed -
11 Sobic.001G287301 - -
12 Sobic.004G212800 - -
13 Sobic.004G198000 protein kinase domain containing protein, expressed K08857: NIMA (never in mitosis gene a)-related kinase 1/4/5
14 Sobic.001G439500 acyl CoA binding protein, putative, expressed -
15 Sobic.003G117000 late embryogenesis abundant protein, putative, expressed -
16 Sobic.010G074500 -(PubMedID : 26320239)@phosphopantothenoylcysteine decarboxylase, putative, expressed K01598: PPCDC, phosphopantothenoylcysteine decarboxylase
17 Sobic.002G108800 auxin efflux carrier component, putative, expressed -
18 Sobic.010G263800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein(PubMedID : 28640841)@UPF0183 protein, putative, expressed -
19 Sobic.008G157950 - -
20 Sobic.002G221700 microtubule associated protein, putative, expressed K16732: protein regulator of cytokinesis 1


Gene co-expression network
sample SobicK016900 SobicK016900 Sobic002G283300 Sobic002G283300 SobicK016900--Sobic002G283300 Sobic009G156000 Sobic009G156000 SobicK016900--Sobic009G156000 Sobic004G143700 Sobic004G143700 SobicK016900--Sobic004G143700 Sobic007G211000 Sobic007G211000 SobicK016900--Sobic007G211000 Sobic003G393300 Sobic003G393300 SobicK016900--Sobic003G393300 Sobic001G347600 Sobic001G347600 SobicK016900--Sobic001G347600 Sobic002G115801 Sobic002G115801 SobicK016900--Sobic002G115801 Sobic005G167300 Sobic005G167300 SobicK016900--Sobic005G167300 Sobic003G044900 Sobic003G044900 SobicK016900--Sobic003G044900 Sobic002G283300--Sobic009G156000 Sobic010G263800 Sobic010G263800 Sobic002G283300--Sobic010G263800 Sobic004G212800 Sobic004G212800 Sobic002G283300--Sobic004G212800 Sobic002G283300--Sobic004G143700 Sobic006G009400 Sobic006G009400 Sobic002G283300--Sobic006G009400 Sobic002G283300--SobicK016900 Sobic001G287301 Sobic001G287301 Sobic002G283300--Sobic001G287301 Sobic010G248200 Sobic010G248200 Sobic002G283300--Sobic010G248200 Sobic005G130200 Sobic005G130200 Sobic002G283300--Sobic005G130200 Sobic009G156000--Sobic002G283300 Sobic005G028400 Sobic005G028400 Sobic009G156000--Sobic005G028400 Sobic003G093600 Sobic003G093600 Sobic009G156000--Sobic003G093600 Sobic008G161401 Sobic008G161401 Sobic009G156000--Sobic008G161401 Sobic009G156000--Sobic005G130200 Sobic002G165300 Sobic002G165300 Sobic009G156000--Sobic002G165300 Sobic001G479500 Sobic001G479500 Sobic009G156000--Sobic001G479500 Sobic009G156000--Sobic010G248200 Sobic009G156000--Sobic004G143700 Sobic007G073400 Sobic007G073400 Sobic004G143700--Sobic007G073400 Sobic007G023700 Sobic007G023700 Sobic004G143700--Sobic007G023700 Sobic004G143700--Sobic004G212800 Sobic004G143700--Sobic002G283300 Sobic004G143700--Sobic010G248200 Sobic001G024200 Sobic001G024200 Sobic004G143700--Sobic001G024200 Sobic004G143700--Sobic003G093600 Sobic001G439500 Sobic001G439500 Sobic004G143700--Sobic001G439500 Sobic001G543900 Sobic001G543900 Sobic004G143700--Sobic001G543900 Sobic007G211000--Sobic001G024200 Sobic004G112500 Sobic004G112500 Sobic007G211000--Sobic004G112500 Sobic010G124001 Sobic010G124001 Sobic007G211000--Sobic010G124001 Sobic003G117000 Sobic003G117000 Sobic007G211000--Sobic003G117000 Sobic001G272000 Sobic001G272000 Sobic007G211000--Sobic001G272000 Sobic001G243901 Sobic001G243901 Sobic007G211000--Sobic001G243901 Sobic005G117901 Sobic005G117901 Sobic007G211000--Sobic005G117901 Sobic007G211000--Sobic004G212800 Sobic007G211000--Sobic010G248200 Sobic003G393300--SobicK016900 Sobic003G393300--Sobic002G115801 SobicK009900 SobicK009900 Sobic003G393300--SobicK009900 Sobic004G198000 Sobic004G198000 Sobic003G393300--Sobic004G198000 Sobic003G393300--Sobic005G167300 Sobic009G157500 Sobic009G157500 Sobic003G393300--Sobic009G157500 Sobic001G451000 Sobic001G451000 Sobic003G393300--Sobic001G451000 Sobic003G393300--Sobic001G287301 Sobic003G393300--Sobic001G272000 Sobic001G347600--Sobic010G263800 Sobic001G347600--Sobic007G023700 Sobic001G347600--Sobic004G143700 Sobic002G077200 Sobic002G077200 Sobic001G347600--Sobic002G077200 Sobic009G117400 Sobic009G117400 Sobic001G347600--Sobic009G117400 Sobic007G035600 Sobic007G035600 Sobic001G347600--Sobic007G035600 Sobic001G347600--Sobic007G073400 Sobic007G205800 Sobic007G205800 Sobic001G347600--Sobic007G205800 Sobic001G347600--SobicK016900 Sobic002G115801--Sobic001G451000 Sobic002G115801--Sobic005G167300 Sobic002G115801--Sobic001G287301 Sobic002G115801--SobicK009900 Sobic002G115801--SobicK016900 Sobic003G244800 Sobic003G244800 Sobic002G115801--Sobic003G244800 Sobic002G115801--Sobic003G393300 Sobic002G115801--Sobic007G211000 Sobic002G115801--Sobic003G117000 Sobic005G167300--Sobic001G451000 Sobic005G167300--Sobic002G115801 Sobic005G167300--Sobic004G198000 Sobic003G026300 Sobic003G026300 Sobic005G167300--Sobic003G026300 Sobic002G284200 Sobic002G284200 Sobic005G167300--Sobic002G284200 Sobic005G167300--SobicK016900 Sobic007G150200 Sobic007G150200 Sobic005G167300--Sobic007G150200 Sobic004G188300 Sobic004G188300 Sobic005G167300--Sobic004G188300 Sobic005G167300--Sobic003G117000 Sobic002G221900 Sobic002G221900 Sobic003G044900--Sobic002G221900 Sobic003G044900--Sobic004G212800 Sobic003G044900--Sobic004G143700 Sobic003G044900--Sobic001G024200 Sobic003G044900--Sobic007G073400 Sobic002G221700 Sobic002G221700 Sobic003G044900--Sobic002G221700 Sobic003G015000 Sobic003G015000 Sobic003G044900--Sobic003G015000 Sobic002G039500 Sobic002G039500 Sobic003G044900--Sobic002G039500 Sobic009G214600 Sobic009G214600 Sobic003G044900--Sobic009G214600
Octagon: transcription factors


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