Gene annotation
Transcriptome id Sobic.010G263800.2,Sobic.010G263800.3
Synonym Sb10g029990,
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
uncharacterized protein (PubMedID : 28640841)
UPF0183 protein, putative, expressed
UniProt A0A1W0VV17
Pfam PF03676
Panther DB PTHR13465
NCBI CDD KOG2819; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G51130 : -
RAP-DB (Rice) LOC_Os06g49990.3 : UPF0183 protein, putative, expressed
MaizeGDB (Corn) Zm00025a018473
Brachypodium KQK17527
Barley HORVU7Hr1G091220.6 , HORVU7Hr1G091220.5 , HORVU7Hr1G091220.4 , HORVU7Hr1G091220.3 , HORVU7Hr1G091220.2 , HORVU7Hr1G091220.1
Wheat TraesCS7B02G286900 , TraesCS7B02G286900 , TraesCS7A02G384200 , TraesCS7A02G384200 , TraesCS7A02G384200 , TraesCS7D02G380700 , TraesCS7D02G380700
Populus PNT26525 , PNT26524 , PNT26523 , PNT36270 , PNT36271 , PNT36272 , PNT36273 , PNT36269


JBrowse

Open New Page


cDNA sequences
Sobic.010G263800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G009400 G-patch domain containing protein, expressed -
2 Sobic.007G011400 armadillo/beta-catenin repeat family protein, putative, expressed -
3 Sobic.002G077200 expressed protein -
4 Sobic.002G313300 bromodomain domain containing protein, expressed -
5 Sobic.002G157300 Ser/Thr protein phosphatase family protein, putative, expressed K15423: serine/threonine-protein phosphatase 4 catalytic subunit
6 Sobic.007G205800 chaperone protein dnaJ 10, putative, expressed -
7 Sobic.009G117400 protein kinase domain containing protein, expressed -
8 Sobic.001G347600 paramyosin, putative, expressed -
9 Sobic.008G034600 protein kinase PKN/PRK1, effector, putative, expressed -
10 Sobic.010G074500 -(PubMedID : 26320239)@phosphopantothenoylcysteine decarboxylase, putative, expressed K01598: PPCDC, phosphopantothenoylcysteine decarboxylase
11 Sobic.002G283300 protein kinase family protein, putative, expressed -
12 Sobic.008G117200 RING finger and CHY zinc finger domain-containing protein 1, putative, expressed K10144: RCHY1, RING finger and CHY zinc finger domain-containing protein 1
13 Sobic.004G271900 RMD5 homolog A, putative, expressed -
14 Sobic.003G435600 CBS domain-containing protein, putative, expressed -
15 Sobic.001G477800 expressed protein -
16 Sobic.010G026400 BUD13, putative, expressed K13106: BUD13, pre-mRNA-splicing factor CWC26
17 Sobic.005G187200 expressed protein -
18 Sobic.004G256600 KH domain containing protein, putative, expressed K14945: protein quaking
19 Sobic.009G156000 arginyl-tRNA--protein transferase 1, putative, expressed K00685: arginyl-tRNA---protein transferase
20 Sobic.009G040700 "OsPPKL2(Ortholog in rice:Zhan et al., 2012)"(PubMedID : 31659919)@serine/threonine protein phosphatase, putative, expressed K01090: protein phosphatase


Gene co-expression network
sample Sobic010G263800 Sobic010G263800 Sobic006G009400 Sobic006G009400 Sobic010G263800--Sobic006G009400 Sobic007G011400 Sobic007G011400 Sobic010G263800--Sobic007G011400 Sobic002G077200 Sobic002G077200 Sobic010G263800--Sobic002G077200 Sobic002G313300 Sobic002G313300 Sobic010G263800--Sobic002G313300 Sobic002G157300 Sobic002G157300 Sobic010G263800--Sobic002G157300 Sobic007G205800 Sobic007G205800 Sobic010G263800--Sobic007G205800 Sobic009G117400 Sobic009G117400 Sobic010G263800--Sobic009G117400 Sobic001G347600 Sobic001G347600 Sobic010G263800--Sobic001G347600 Sobic008G034600 Sobic008G034600 Sobic010G263800--Sobic008G034600 Sobic006G009400--Sobic010G263800 Sobic005G055150 Sobic005G055150 Sobic006G009400--Sobic005G055150 Sobic006G009400--Sobic002G313300 Sobic001G543900 Sobic001G543900 Sobic006G009400--Sobic001G543900 Sobic005G110427 Sobic005G110427 Sobic006G009400--Sobic005G110427 Sobic001G477800 Sobic001G477800 Sobic006G009400--Sobic001G477800 Sobic007G073400 Sobic007G073400 Sobic006G009400--Sobic007G073400 Sobic007G178700 Sobic007G178700 Sobic006G009400--Sobic007G178700 Sobic006G262200 Sobic006G262200 Sobic006G009400--Sobic006G262200 Sobic001G094000 Sobic001G094000 Sobic007G011400--Sobic001G094000 Sobic007G011400--Sobic007G205800 Sobic007G011400--Sobic002G157300 Sobic007G011400--Sobic010G263800 Sobic007G011400--Sobic002G313300 Sobic009G040700 Sobic009G040700 Sobic007G011400--Sobic009G040700 Sobic002G157000 Sobic002G157000 Sobic007G011400--Sobic002G157000 Sobic001G162300 Sobic001G162300 Sobic007G011400--Sobic001G162300 Sobic007G011400--Sobic008G034600 Sobic002G077200--Sobic002G313300 Sobic002G077200--Sobic010G263800 Sobic003G258400 Sobic003G258400 Sobic002G077200--Sobic003G258400 Sobic002G077200--Sobic007G205800 Sobic002G077200--Sobic006G009400 Sobic009G231300 Sobic009G231300 Sobic002G077200--Sobic009G231300 Sobic002G077200--Sobic001G477800 Sobic005G187200 Sobic005G187200 Sobic002G077200--Sobic005G187200 Sobic002G077200--Sobic001G543900 Sobic002G313300--Sobic001G477800 Sobic002G313300--Sobic002G077200 Sobic002G313300--Sobic007G011400 Sobic002G313300--Sobic010G263800 Sobic002G313300--Sobic001G543900 Sobic006G080300 Sobic006G080300 Sobic002G313300--Sobic006G080300 Sobic002G313300--Sobic006G009400 Sobic007G185900 Sobic007G185900 Sobic002G313300--Sobic007G185900 Sobic004G031700 Sobic004G031700 Sobic002G313300--Sobic004G031700 Sobic010G026400 Sobic010G026400 Sobic002G157300--Sobic010G026400 Sobic003G187400 Sobic003G187400 Sobic002G157300--Sobic003G187400 Sobic002G157300--Sobic007G011400 Sobic005G149500 Sobic005G149500 Sobic002G157300--Sobic005G149500 Sobic002G157300--Sobic001G094000 Sobic010G260500 Sobic010G260500 Sobic002G157300--Sobic010G260500 Sobic002G157300--Sobic007G185900 Sobic002G157300--Sobic010G263800 Sobic006G173100 Sobic006G173100 Sobic002G157300--Sobic006G173100 Sobic007G205800--Sobic007G011400 Sobic009G087800 Sobic009G087800 Sobic007G205800--Sobic009G087800 Sobic007G205800--Sobic010G263800 Sobic007G205800--Sobic008G034600 Sobic004G271900 Sobic004G271900 Sobic007G205800--Sobic004G271900 Sobic009G022200 Sobic009G022200 Sobic007G205800--Sobic009G022200 Sobic003G093600 Sobic003G093600 Sobic007G205800--Sobic003G093600 Sobic007G205800--Sobic003G258400 Sobic007G205800--Sobic002G077200 Sobic009G117300 Sobic009G117300 Sobic009G117400--Sobic009G117300 Sobic009G117400--Sobic004G271900 Sobic009G117400--Sobic010G263800 Sobic009G117400--Sobic007G205800 Sobic004G256600 Sobic004G256600 Sobic009G117400--Sobic004G256600 Sobic009G117400--Sobic008G034600 Sobic009G117400--Sobic001G347600 Sobic004G057400 Sobic004G057400 Sobic009G117400--Sobic004G057400 Sobic006G209500 Sobic006G209500 Sobic009G117400--Sobic006G209500 Sobic001G347600--Sobic010G263800 Sobic007G023700 Sobic007G023700 Sobic001G347600--Sobic007G023700 Sobic004G143700 Sobic004G143700 Sobic001G347600--Sobic004G143700 Sobic001G347600--Sobic002G077200 Sobic001G347600--Sobic009G117400 Sobic007G035600 Sobic007G035600 Sobic001G347600--Sobic007G035600 Sobic001G347600--Sobic007G073400 Sobic001G347600--Sobic007G205800 SobicK016900 SobicK016900 Sobic001G347600--SobicK016900 Sobic008G034600--Sobic007G205800 Sobic008G034600--Sobic007G011400 Sobic008G034600--Sobic010G263800 Sobic008G034600--Sobic004G271900 Sobic008G117200 Sobic008G117200 Sobic008G034600--Sobic008G117200 Sobic002G421700 Sobic002G421700 Sobic008G034600--Sobic002G421700 Sobic008G034600--Sobic009G022200 Sobic007G224900 Sobic007G224900 Sobic008G034600--Sobic007G224900 Sobic003G346000 Sobic003G346000 Sobic008G034600--Sobic003G346000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.