Gene annotation
Transcriptome id Sobic.005G187200.3,Sobic.005G187200.4,Sobic.005G187200.1
Synonym Sb05g024480
Functional annotation expressed protein
UniProt A0A1Z5RJ90 , A0A1Z5RJD0 , A0A1Z5RJR9
Pfam PF05705
Panther DB PTHR12265 PTHR12265:SF3
NCBI CDD KOG2521; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G15695 : Protein of unknown function DUF829, transmembrane 53
RAP-DB (Rice) LOC_Os11g40070.1 : expressed protein
MaizeGDB (Corn) Zm00025a029357
Brachypodium KQJ87817
Barley -
Wheat TraesCS5D02G167200 , TraesCS5D02G167200 , TraesCS5B02G159300 , TraesCS5B02G159300 , TraesCS5B02G159300 , TraesCS5A02G161900 , TraesCS5A02G161900
Populus -


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cDNA sequences
Sobic.005G187200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G263800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein(PubMedID : 28640841)@UPF0183 protein, putative, expressed -
2 Sobic.004G271900 RMD5 homolog A, putative, expressed -
3 Sobic.001G479500 dihydroflavonol-4-reductase, putative, expressed K15891: NAD+-dependent farnesol dehydrogenase
4 Sobic.004G256600 KH domain containing protein, putative, expressed K14945: protein quaking
5 Sobic.007G205800 chaperone protein dnaJ 10, putative, expressed -
6 Sobic.007G011400 armadillo/beta-catenin repeat family protein, putative, expressed -
7 Sobic.002G077200 expressed protein -
8 Sobic.009G134500 WD domain, G-beta repeat domain containing protein, expressed K11801: DDB1- and CUL4-associated factor 11
9 Sobic.001G194900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FAD dependent oxidoreductase domain containing protein, expressed K00311: electron-transferring-flavoprotein dehydrogenase
10 Sobic.009G087800 seven in absentia protein family domain containing protein, expressed K08742: E3 ubiquitin-protein ligase SIAH2
11 Sobic.002G313300 bromodomain domain containing protein, expressed -
12 Sobic.009G198900 trehalose synthase, putative, expressed K16055: trehalose 6-phosphate synthase/phosphatase
13 Sobic.009G156000 arginyl-tRNA--protein transferase 1, putative, expressed K00685: arginyl-tRNA---protein transferase
14 Sobic.003G324000 3-hydroxybutyryl-CoA dehydrogenase, putative, expressed K00074: paaH, hbd, fadB, 3-hydroxybutyryl-CoA dehydrogenase
15 Sobic.002G283300 protein kinase family protein, putative, expressed -
16 Sobic.005G130200 - -
17 Sobic.008G041700 TLD family protein, putative, expressed -
18 Sobic.006G009400 G-patch domain containing protein, expressed -
19 Sobic.001G543800 ethylene-responsive element-binding protein, putative, expressed -
20 Sobic.003G093600 methyltransferase, putative, expressed -


Gene co-expression network
sample Sobic005G187200 Sobic005G187200 Sobic010G263800 Sobic010G263800 Sobic005G187200--Sobic010G263800 Sobic004G271900 Sobic004G271900 Sobic005G187200--Sobic004G271900 Sobic001G479500 Sobic001G479500 Sobic005G187200--Sobic001G479500 Sobic004G256600 Sobic004G256600 Sobic005G187200--Sobic004G256600 Sobic007G205800 Sobic007G205800 Sobic005G187200--Sobic007G205800 Sobic007G011400 Sobic007G011400 Sobic005G187200--Sobic007G011400 Sobic002G077200 Sobic002G077200 Sobic005G187200--Sobic002G077200 Sobic009G134500 Sobic009G134500 Sobic005G187200--Sobic009G134500 Sobic001G194900 Sobic001G194900 Sobic005G187200--Sobic001G194900 Sobic006G009400 Sobic006G009400 Sobic010G263800--Sobic006G009400 Sobic010G263800--Sobic007G011400 Sobic010G263800--Sobic002G077200 Sobic002G313300 Sobic002G313300 Sobic010G263800--Sobic002G313300 Sobic002G157300 Sobic002G157300 Sobic010G263800--Sobic002G157300 Sobic010G263800--Sobic007G205800 Sobic009G117400 Sobic009G117400 Sobic010G263800--Sobic009G117400 Sobic001G347600 Sobic001G347600 Sobic010G263800--Sobic001G347600 Sobic008G034600 Sobic008G034600 Sobic010G263800--Sobic008G034600 Sobic004G271900--Sobic009G117400 Sobic004G271900--Sobic007G205800 Sobic004G271900--Sobic008G034600 Sobic004G271900--Sobic010G263800 Sobic003G093600 Sobic003G093600 Sobic004G271900--Sobic003G093600 Sobic004G271900--Sobic004G256600 Sobic004G271900--Sobic007G011400 Sobic003G258400 Sobic003G258400 Sobic004G271900--Sobic003G258400 Sobic009G117300 Sobic009G117300 Sobic004G271900--Sobic009G117300 Sobic003G057800 Sobic003G057800 Sobic001G479500--Sobic003G057800 Sobic005G130200 Sobic005G130200 Sobic001G479500--Sobic005G130200 Sobic010G248200 Sobic010G248200 Sobic001G479500--Sobic010G248200 Sobic008G161401 Sobic008G161401 Sobic001G479500--Sobic008G161401 Sobic009G156000 Sobic009G156000 Sobic001G479500--Sobic009G156000 Sobic001G543900 Sobic001G543900 Sobic001G479500--Sobic001G543900 Sobic001G479500--Sobic005G187200 Sobic002G283300 Sobic002G283300 Sobic001G479500--Sobic002G283300 Sobic004G212800 Sobic004G212800 Sobic001G479500--Sobic004G212800 Sobic004G256600--Sobic003G258400 Sobic004G256600--Sobic004G271900 Sobic004G256600--Sobic010G263800 Sobic009G040700 Sobic009G040700 Sobic004G256600--Sobic009G040700 Sobic004G256600--Sobic005G187200 Sobic004G256600--Sobic006G009400 Sobic009G231300 Sobic009G231300 Sobic004G256600--Sobic009G231300 Sobic004G256600--Sobic009G117400 Sobic004G256600--Sobic002G077200 Sobic007G205800--Sobic007G011400 Sobic009G087800 Sobic009G087800 Sobic007G205800--Sobic009G087800 Sobic007G205800--Sobic010G263800 Sobic007G205800--Sobic008G034600 Sobic007G205800--Sobic004G271900 Sobic009G022200 Sobic009G022200 Sobic007G205800--Sobic009G022200 Sobic007G205800--Sobic003G093600 Sobic007G205800--Sobic003G258400 Sobic007G205800--Sobic002G077200 Sobic001G094000 Sobic001G094000 Sobic007G011400--Sobic001G094000 Sobic007G011400--Sobic007G205800 Sobic007G011400--Sobic002G157300 Sobic007G011400--Sobic010G263800 Sobic007G011400--Sobic002G313300 Sobic007G011400--Sobic009G040700 Sobic002G157000 Sobic002G157000 Sobic007G011400--Sobic002G157000 Sobic001G162300 Sobic001G162300 Sobic007G011400--Sobic001G162300 Sobic007G011400--Sobic008G034600 Sobic002G077200--Sobic002G313300 Sobic002G077200--Sobic010G263800 Sobic002G077200--Sobic003G258400 Sobic002G077200--Sobic007G205800 Sobic002G077200--Sobic006G009400 Sobic002G077200--Sobic009G231300 Sobic001G477800 Sobic001G477800 Sobic002G077200--Sobic001G477800 Sobic002G077200--Sobic005G187200 Sobic002G077200--Sobic001G543900 Sobic006G246900 Sobic006G246900 Sobic009G134500--Sobic006G246900 Sobic006G082600 Sobic006G082600 Sobic009G134500--Sobic006G082600 Sobic009G127900 Sobic009G127900 Sobic009G134500--Sobic009G127900 Sobic009G134500--Sobic001G162300 Sobic009G134500--Sobic002G157000 Sobic008G041700 Sobic008G041700 Sobic009G134500--Sobic008G041700 Sobic009G134500--Sobic005G187200 Sobic007G037900 Sobic007G037900 Sobic009G134500--Sobic007G037900 Sobic007G178700 Sobic007G178700 Sobic009G134500--Sobic007G178700 Sobic008G160700 Sobic008G160700 Sobic001G194900--Sobic008G160700 Sobic010G001600 Sobic010G001600 Sobic001G194900--Sobic010G001600 Sobic007G130600 Sobic007G130600 Sobic001G194900--Sobic007G130600 Sobic001G194900--Sobic005G187200 Sobic001G543800 Sobic001G543800 Sobic001G194900--Sobic001G543800 Sobic009G235900 Sobic009G235900 Sobic001G194900--Sobic009G235900 Sobic001G424700 Sobic001G424700 Sobic001G194900--Sobic001G424700 Sobic005G177800 Sobic005G177800 Sobic001G194900--Sobic005G177800 Sobic001G194900--Sobic005G130200
Octagon: transcription factors


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