Gene annotation
Transcriptome id Sobic.001G543800.1
Synonym Sb01g050610
Functional annotation ethylene-responsive element-binding protein, putative, expressed
UniProt C5WNP0
Pfam PF05903
Panther DB PTHR12378 PTHR12378:SF19
NCBI CDD KOG0324; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G17486 : PPPDE putative thiol peptidase family protein
RAP-DB (Rice) LOC_Os03g01130.2 : ethylene-responsive element-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a000079
Brachypodium -
Barley HORVU0Hr1G009550.4 , HORVU0Hr1G009550.3 , HORVU0Hr1G009550.5 , HORVU0Hr1G009550.2 , HORVU0Hr1G009550.1
Wheat TraesCS4B02G376300 , TraesCS2B02G435700 , TraesCS2B02G435700 , TraesCS5A02G543200 , TraesCS2A02G416700 , TraesCS2D02G413700 , TraesCS4B02G376300
Populus -


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cDNA sequences
Sobic.001G543800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G001600 homogentisate 1,2-dioxygenase, putative, expressed K00451: HGD, homogentisate 1,2-dioxygenase
2 Sobic.005G177800 helix-loop-helix DNA-binding domain containing protein, expressed -
3 Sobic.006G128900 cyclin-dependent kinase G-2, putative, expressed K08818: cell division cycle 2-like
4 Sobic.006G124900 MA3 domain containing protein, expressed -
5 Sobic.001G194900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FAD dependent oxidoreductase domain containing protein, expressed K00311: electron-transferring-flavoprotein dehydrogenase
6 Sobic.004G196700 expressed protein -
7 Sobic.008G024600 expressed protein -
8 Sobic.009G040700 "OsPPKL2(Ortholog in rice:Zhan et al., 2012)"(PubMedID : 31659919)@serine/threonine protein phosphatase, putative, expressed K01090: protein phosphatase
9 Sobic.004G256600 KH domain containing protein, putative, expressed K14945: protein quaking
10 Sobic.005G045300 PX domain containing protein, putative, expressed K17925: sorting nexin-13
11 Sobic.005G187200 expressed protein -
12 Sobic.007G078000 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
13 Sobic.007G054000 powdery mildew resistance protein PM3b, putative, expressed -
14 Sobic.001G424700 CAMK_CAMK_like_ULKh_APGy.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08269: ULK2, serine/threonine-protein kinase ULK2
15 Sobic.002G300400 serine/threonine-protein kinase CTR1, putative, expressed -
16 Sobic.010G276800 pollen signalling protein with adenylyl cyclase activity, putative, expressed -
17 Sobic.006G159900 DTA2, putative, expressed -
18 Sobic.001G477800 expressed protein -
19 Sobic.001G413500 expressed protein -
20 Sobic.004G188400 photoperiodic flowering time gene(PubMedID : 22394582)@FAD binding domain of DNA photolyase domain containing protein, expressed K12118: cryptochrome 1


Gene co-expression network
sample Sobic001G543800 Sobic001G543800 Sobic010G001600 Sobic010G001600 Sobic001G543800--Sobic010G001600 Sobic005G177800 Sobic005G177800 Sobic001G543800--Sobic005G177800 Sobic006G128900 Sobic006G128900 Sobic001G543800--Sobic006G128900 Sobic006G124900 Sobic006G124900 Sobic001G543800--Sobic006G124900 Sobic001G194900 Sobic001G194900 Sobic001G543800--Sobic001G194900 Sobic004G196700 Sobic004G196700 Sobic001G543800--Sobic004G196700 Sobic008G024600 Sobic008G024600 Sobic001G543800--Sobic008G024600 Sobic009G040700 Sobic009G040700 Sobic001G543800--Sobic009G040700 Sobic004G256600 Sobic004G256600 Sobic001G543800--Sobic004G256600 Sobic008G160700 Sobic008G160700 Sobic010G001600--Sobic008G160700 Sobic010G001600--Sobic006G124900 Sobic010G001600--Sobic001G194900 Sobic010G001600--Sobic005G177800 Sobic010G001600--Sobic001G543800 Sobic005G130200 Sobic005G130200 Sobic010G001600--Sobic005G130200 Sobic002G300400 Sobic002G300400 Sobic010G001600--Sobic002G300400 Sobic010G276800 Sobic010G276800 Sobic010G001600--Sobic010G276800 Sobic010G001600--Sobic008G024600 Sobic005G177800--Sobic006G124900 Sobic005G177800--Sobic004G196700 Sobic005G177800--Sobic010G001600 Sobic005G177800--Sobic001G543800 Sobic004G031700 Sobic004G031700 Sobic005G177800--Sobic004G031700 Sobic001G477800 Sobic001G477800 Sobic005G177800--Sobic001G477800 Sobic007G078000 Sobic007G078000 Sobic005G177800--Sobic007G078000 Sobic002G313300 Sobic002G313300 Sobic005G177800--Sobic002G313300 Sobic009G000500 Sobic009G000500 Sobic005G177800--Sobic009G000500 Sobic006G209850 Sobic006G209850 Sobic006G128900--Sobic006G209850 Sobic001G511500 Sobic001G511500 Sobic006G128900--Sobic001G511500 Sobic006G128900--Sobic004G031700 Sobic006G128900--Sobic009G000500 Sobic001G090400 Sobic001G090400 Sobic006G128900--Sobic001G090400 Sobic003G445400 Sobic003G445400 Sobic006G128900--Sobic003G445400 Sobic003G268300 Sobic003G268300 Sobic006G128900--Sobic003G268300 Sobic006G128900--Sobic001G477800 Sobic002G157000 Sobic002G157000 Sobic006G128900--Sobic002G157000 Sobic006G124900--Sobic005G177800 Sobic006G124900--Sobic010G001600 Sobic006G124900--Sobic004G196700 Sobic006G124900--Sobic001G543800 Sobic006G124900--Sobic010G276800 Sobic006G124900--Sobic002G313300 Sobic006G124900--Sobic001G477800 Sobic007G130600 Sobic007G130600 Sobic006G124900--Sobic007G130600 Sobic006G124900--Sobic002G300400 Sobic001G194900--Sobic008G160700 Sobic001G194900--Sobic010G001600 Sobic001G194900--Sobic007G130600 Sobic005G187200 Sobic005G187200 Sobic001G194900--Sobic005G187200 Sobic001G194900--Sobic001G543800 Sobic009G235900 Sobic009G235900 Sobic001G194900--Sobic009G235900 Sobic001G424700 Sobic001G424700 Sobic001G194900--Sobic001G424700 Sobic001G194900--Sobic005G177800 Sobic001G194900--Sobic005G130200 Sobic007G185900 Sobic007G185900 Sobic004G196700--Sobic007G185900 Sobic004G196700--Sobic007G078000 Sobic005G149500 Sobic005G149500 Sobic004G196700--Sobic005G149500 Sobic007G137900 Sobic007G137900 Sobic004G196700--Sobic007G137900 Sobic002G157300 Sobic002G157300 Sobic004G196700--Sobic002G157300 Sobic003G187400 Sobic003G187400 Sobic004G196700--Sobic003G187400 Sobic004G196700--Sobic001G477800 Sobic006G082600 Sobic006G082600 Sobic004G196700--Sobic006G082600 Sobic004G196700--Sobic009G040700 Sobic008G024600--Sobic006G209850 Sobic002G053000 Sobic002G053000 Sobic008G024600--Sobic002G053000 Sobic008G024600--Sobic006G128900 Sobic008G024600--Sobic009G040700 Sobic010G129200 Sobic010G129200 Sobic008G024600--Sobic010G129200 Sobic002G158700 Sobic002G158700 Sobic008G024600--Sobic002G158700 Sobic002G343800 Sobic002G343800 Sobic008G024600--Sobic002G343800 Sobic003G280800 Sobic003G280800 Sobic008G024600--Sobic003G280800 Sobic005G045300 Sobic005G045300 Sobic008G024600--Sobic005G045300 Sobic001G094000 Sobic001G094000 Sobic009G040700--Sobic001G094000 Sobic009G040700--Sobic003G187400 Sobic009G040700--Sobic005G149500 Sobic007G011400 Sobic007G011400 Sobic009G040700--Sobic007G011400 Sobic009G040700--Sobic002G157300 Sobic009G040700--Sobic001G477800 Sobic006G145000 Sobic006G145000 Sobic009G040700--Sobic006G145000 Sobic009G040700--Sobic004G196700 Sobic008G078100 Sobic008G078100 Sobic009G040700--Sobic008G078100 Sobic003G258400 Sobic003G258400 Sobic004G256600--Sobic003G258400 Sobic004G271900 Sobic004G271900 Sobic004G256600--Sobic004G271900 Sobic010G263800 Sobic010G263800 Sobic004G256600--Sobic010G263800 Sobic004G256600--Sobic009G040700 Sobic004G256600--Sobic005G187200 Sobic006G009400 Sobic006G009400 Sobic004G256600--Sobic006G009400 Sobic009G231300 Sobic009G231300 Sobic004G256600--Sobic009G231300 Sobic009G117400 Sobic009G117400 Sobic004G256600--Sobic009G117400 Sobic002G077200 Sobic002G077200 Sobic004G256600--Sobic002G077200
Octagon: transcription factors


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