Gene annotation
Transcriptome id Sobic.010G001600.1
Synonym HGO, Sb10g000360
Functional annotation homogentisate 1,2-dioxygenase, putative, expressed
UniProt C5Z228
Pfam PF04209
Panther DB PTHR11056 PTHR11056:SF0
NCBI CDD -
KEGG Orthology K00451; HGD, homogentisate 1,2-dioxygenase
Gene Ontology GO:0006570; tyrosine metabolic process GO:0006559L-phenylalanine catabolic process GO:0004411homogentisate 1,2-dioxygenase activity


Orthologs (automatic annotation)
TAIR AT5G54080 : homogentisate 1,2-dioxygenase
RAP-DB (Rice) LOC_Os06g01360.1 : homogentisate 1,2-dioxygenase, putative, expressed
MaizeGDB (Corn) Zm00025a050349
Brachypodium KQK20077 , PNT76730
Barley -
Wheat TraesCS7D02G004100 , TraesCS4A02G495000 , TraesCS7A02G003600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G160700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial precursor, putative, expressed K01968: 3-methylcrotonyl-CoA carboxylase alpha subunit
2 Sobic.006G124900 MA3 domain containing protein, expressed -
3 Sobic.001G194900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FAD dependent oxidoreductase domain containing protein, expressed K00311: electron-transferring-flavoprotein dehydrogenase
4 Sobic.005G177800 helix-loop-helix DNA-binding domain containing protein, expressed -
5 Sobic.001G543800 ethylene-responsive element-binding protein, putative, expressed -
6 Sobic.005G130200 - -
7 Sobic.002G300400 serine/threonine-protein kinase CTR1, putative, expressed -
8 Sobic.010G276800 pollen signalling protein with adenylyl cyclase activity, putative, expressed -
9 Sobic.008G024600 expressed protein -
10 Sobic.007G130600 methylcrotonoyl-CoA carboxylase beta chain, mitochondrial precursor, putative, expressed K01969: 3-methylcrotonyl-CoA carboxylase beta subunit
11 Sobic.002G343800 - -
12 Sobic.009G040700 "OsPPKL2(Ortholog in rice:Zhan et al., 2012)"(PubMedID : 31659919)@serine/threonine protein phosphatase, putative, expressed K01090: protein phosphatase
13 Sobic.004G196700 expressed protein -
14 Sobic.004G256600 KH domain containing protein, putative, expressed K14945: protein quaking
15 Sobic.009G156000 arginyl-tRNA--protein transferase 1, putative, expressed K00685: arginyl-tRNA---protein transferase
16 Sobic.007G078000 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
17 Sobic.004G037900 GHMP kinases ATP-binding protein, putative, expressed K12446: L-arabinokinase
18 Sobic.004G357200 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
19 Sobic.009G235900 transporter family protein, putative, expressed K08145: SLC2A8, MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 8
20 Sobic.005G149500 palmitoyltransferase TIP1, putative, expressed K18932: palmitoyltransferase


Gene co-expression network
sample Sobic010G001600 Sobic010G001600 Sobic008G160700 Sobic008G160700 Sobic010G001600--Sobic008G160700 Sobic006G124900 Sobic006G124900 Sobic010G001600--Sobic006G124900 Sobic001G194900 Sobic001G194900 Sobic010G001600--Sobic001G194900 Sobic005G177800 Sobic005G177800 Sobic010G001600--Sobic005G177800 Sobic001G543800 Sobic001G543800 Sobic010G001600--Sobic001G543800 Sobic005G130200 Sobic005G130200 Sobic010G001600--Sobic005G130200 Sobic002G300400 Sobic002G300400 Sobic010G001600--Sobic002G300400 Sobic010G276800 Sobic010G276800 Sobic010G001600--Sobic010G276800 Sobic008G024600 Sobic008G024600 Sobic010G001600--Sobic008G024600 Sobic008G160700--Sobic010G001600 Sobic008G160700--Sobic001G194900 Sobic010G078100 Sobic010G078100 Sobic008G160700--Sobic010G078100 Sobic007G130600 Sobic007G130600 Sobic008G160700--Sobic007G130600 Sobic009G235900 Sobic009G235900 Sobic008G160700--Sobic009G235900 Sobic006G214500 Sobic006G214500 Sobic008G160700--Sobic006G214500 Sobic008G160700--Sobic006G124900 Sobic002G303000 Sobic002G303000 Sobic008G160700--Sobic002G303000 Sobic009G027000 Sobic009G027000 Sobic008G160700--Sobic009G027000 Sobic006G124900--Sobic005G177800 Sobic006G124900--Sobic010G001600 Sobic004G196700 Sobic004G196700 Sobic006G124900--Sobic004G196700 Sobic006G124900--Sobic001G543800 Sobic006G124900--Sobic010G276800 Sobic002G313300 Sobic002G313300 Sobic006G124900--Sobic002G313300 Sobic001G477800 Sobic001G477800 Sobic006G124900--Sobic001G477800 Sobic006G124900--Sobic007G130600 Sobic006G124900--Sobic002G300400 Sobic001G194900--Sobic008G160700 Sobic001G194900--Sobic010G001600 Sobic001G194900--Sobic007G130600 Sobic005G187200 Sobic005G187200 Sobic001G194900--Sobic005G187200 Sobic001G194900--Sobic001G543800 Sobic001G194900--Sobic009G235900 Sobic001G424700 Sobic001G424700 Sobic001G194900--Sobic001G424700 Sobic001G194900--Sobic005G177800 Sobic001G194900--Sobic005G130200 Sobic005G177800--Sobic006G124900 Sobic005G177800--Sobic004G196700 Sobic005G177800--Sobic010G001600 Sobic005G177800--Sobic001G543800 Sobic004G031700 Sobic004G031700 Sobic005G177800--Sobic004G031700 Sobic005G177800--Sobic001G477800 Sobic007G078000 Sobic007G078000 Sobic005G177800--Sobic007G078000 Sobic005G177800--Sobic002G313300 Sobic009G000500 Sobic009G000500 Sobic005G177800--Sobic009G000500 Sobic001G543800--Sobic010G001600 Sobic001G543800--Sobic005G177800 Sobic006G128900 Sobic006G128900 Sobic001G543800--Sobic006G128900 Sobic001G543800--Sobic006G124900 Sobic001G543800--Sobic001G194900 Sobic001G543800--Sobic004G196700 Sobic001G543800--Sobic008G024600 Sobic009G040700 Sobic009G040700 Sobic001G543800--Sobic009G040700 Sobic004G256600 Sobic004G256600 Sobic001G543800--Sobic004G256600 Sobic010G248200 Sobic010G248200 Sobic005G130200--Sobic010G248200 Sobic001G479500 Sobic001G479500 Sobic005G130200--Sobic001G479500 Sobic001G543900 Sobic001G543900 Sobic005G130200--Sobic001G543900 Sobic008G161401 Sobic008G161401 Sobic005G130200--Sobic008G161401 Sobic009G156000 Sobic009G156000 Sobic005G130200--Sobic009G156000 Sobic002G283300 Sobic002G283300 Sobic005G130200--Sobic002G283300 Sobic004G212800 Sobic004G212800 Sobic005G130200--Sobic004G212800 Sobic003G057800 Sobic003G057800 Sobic005G130200--Sobic003G057800 Sobic005G130200--Sobic001G477800 Sobic002G300400--Sobic010G001600 Sobic002G300400--Sobic006G124900 Sobic002G300400--Sobic001G543800 Sobic010G264100 Sobic010G264100 Sobic002G300400--Sobic010G264100 Sobic002G300400--Sobic008G160700 Sobic002G165300 Sobic002G165300 Sobic002G300400--Sobic002G165300 Sobic002G300400--Sobic005G177800 Sobic002G300400--Sobic007G130600 Sobic002G300400--Sobic001G194900 Sobic010G276800--Sobic006G124900 Sobic010G276800--Sobic008G024600 Sobic010G276800--Sobic010G001600 Sobic008G042600 Sobic008G042600 Sobic010G276800--Sobic008G042600 Sobic010G276800--Sobic001G543800 Sobic010G276800--Sobic009G040700 Sobic003G008500 Sobic003G008500 Sobic010G276800--Sobic003G008500 Sobic010G276800--Sobic004G256600 Sobic010G276800--Sobic005G177800 Sobic006G209850 Sobic006G209850 Sobic008G024600--Sobic006G209850 Sobic002G053000 Sobic002G053000 Sobic008G024600--Sobic002G053000 Sobic008G024600--Sobic006G128900 Sobic008G024600--Sobic009G040700 Sobic010G129200 Sobic010G129200 Sobic008G024600--Sobic010G129200 Sobic002G158700 Sobic002G158700 Sobic008G024600--Sobic002G158700 Sobic002G343800 Sobic002G343800 Sobic008G024600--Sobic002G343800 Sobic003G280800 Sobic003G280800 Sobic008G024600--Sobic003G280800 Sobic005G045300 Sobic005G045300 Sobic008G024600--Sobic005G045300
Octagon: transcription factors


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