Gene annotation
Transcriptome id Sobic.004G037900.2,Sobic.004G037900.1
Synonym ARA1, ISA1, Sb04g003250, ATISA1
Functional annotation GHMP kinases ATP-binding protein, putative, expressed
UniProt C5XUK0 , C5XUJ9
Pfam PF00288 PF13528 PF10509 PF00288 PF13528
Panther DB PTHR10457 PTHR10457:SF12
NCBI CDD KOG0631; Galactokinase
KEGG Orthology K12446; L-arabinokinase
Gene Ontology GO:0005524; ATP binding


Orthologs (automatic annotation)
TAIR AT4G16130 : arabinose kinase
RAP-DB (Rice) LOC_Os02g04840.1 : GHMP kinases ATP-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a023989 , Zm00025a009724 , Zm00025a033341 , Zm00025a018380 , Zm00025a034896
Brachypodium KQJ93282 , KQJ93283 , KQK17416 , KQK17415
Barley HORVU6Hr1G020380.9 , HORVU6Hr1G020380.8 , HORVU6Hr1G020380.1 , HORVU6Hr1G020380.3 , HORVU6Hr1G020380.2 , HORVU6Hr1G020380.5 , HORVU6Hr1G020380.4 , HORVU6Hr1G020380.7 , HORVU6Hr1G020380.6 , HORVU6Hr1G020380.19 , HORVU6Hr1G020380.18 , HORVU6Hr1G020380.15 , HORVU6Hr1G020380.14 , HORVU6Hr1G020380.17 , HORVU6Hr1G020380.16 , HORVU6Hr1G020380.11 , HORVU6Hr1G020380.10 , HORVU6Hr1G020380.13 , HORVU6Hr1G020380.12
Wheat TraesCS6A02G112800 , TraesCS7B02G317000 , TraesCS7B02G317000 , TraesCS7B02G317000 , TraesCS7A02G417000 , TraesCS6D02G102400 , TraesCS6B02G141400 , TraesCS7D02G410100 , TraesCS7D02G410100 , TraesCS7D02G410100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G151500 choline transporter-related, putative, expressed -
2 Sobic.002G188500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@trehalose-6-phosphate synthase, putative, expressed K16055: trehalose 6-phosphate synthase/phosphatase
3 Sobic.008G160700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial precursor, putative, expressed K01968: 3-methylcrotonyl-CoA carboxylase alpha subunit
4 Sobic.001G490000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@CSLA4 - cellulose synthase-like family A@ mannan synthase, expressed K13680: beta-mannan synthase
5 Sobic.010G001600 homogentisate 1,2-dioxygenase, putative, expressed K00451: HGD, homogentisate 1,2-dioxygenase
6 Sobic.003G005800 salt stress root protein RS1, putative, expressed -
7 Sobic.009G119200 "beta-1,3-glucanase "(PubMedID : 25311645)@glycosyl hydrolases family 17, putative, expressed -
8 Sobic.003G145900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyltransferase, putative, expressed K13510: lysophosphatidylcholine acyltransferase / lyso-PAF acetyltransferase
9 Sobic.009G235900 transporter family protein, putative, expressed K08145: SLC2A8, MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 8
10 Sobic.001G194900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FAD dependent oxidoreductase domain containing protein, expressed K00311: electron-transferring-flavoprotein dehydrogenase
11 Sobic.001G373100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@RING finger and CHY zinc finger domain-containing protein 1, putative, expressed K10144: RCHY1, RING finger and CHY zinc finger domain-containing protein 1
12 Sobic.008G024600 expressed protein -
13 Sobic.009G121100 expressed protein -
14 Sobic.001G443900 peptide transporter PTR2, putative, expressed -
15 Sobic.006G149700 DUF584 domain containing protein, putative, expressed -
16 Sobic.001G156100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@aminotransferase, putative, expressed K00819: rocD, ornithine--oxo-acid transaminase
17 Sobic.001G028900 ulp1 protease family, C-terminal catalytic domain containing protein, expressed -
18 Sobic.006G138400 regulatory subunit, putative, expressed -
19 Sobic.007G130600 methylcrotonoyl-CoA carboxylase beta chain, mitochondrial precursor, putative, expressed K01969: 3-methylcrotonyl-CoA carboxylase beta subunit
20 Sobic.010G276800 pollen signalling protein with adenylyl cyclase activity, putative, expressed -


Gene co-expression network
sample Sobic004G037900 Sobic004G037900 Sobic001G151500 Sobic001G151500 Sobic004G037900--Sobic001G151500 Sobic002G188500 Sobic002G188500 Sobic004G037900--Sobic002G188500 Sobic008G160700 Sobic008G160700 Sobic004G037900--Sobic008G160700 Sobic001G490000 Sobic001G490000 Sobic004G037900--Sobic001G490000 Sobic010G001600 Sobic010G001600 Sobic004G037900--Sobic010G001600 Sobic003G005800 Sobic003G005800 Sobic004G037900--Sobic003G005800 Sobic009G119200 Sobic009G119200 Sobic004G037900--Sobic009G119200 Sobic003G145900 Sobic003G145900 Sobic004G037900--Sobic003G145900 Sobic009G235900 Sobic009G235900 Sobic004G037900--Sobic009G235900 Sobic001G151500--Sobic004G037900 Sobic001G151500--Sobic001G490000 Sobic001G151500--Sobic010G001600 Sobic001G151500--Sobic008G160700 Sobic010G173800 Sobic010G173800 Sobic001G151500--Sobic010G173800 Sobic001G151500--Sobic009G119200 Sobic001G151500--Sobic002G188500 Sobic001G151500--Sobic003G005800 Sobic001G151500--Sobic003G145900 Sobic002G188500--Sobic009G235900 Sobic002G188500--Sobic003G005800 Sobic002G188500--Sobic004G037900 Sobic001G498200 Sobic001G498200 Sobic002G188500--Sobic001G498200 Sobic001G194900 Sobic001G194900 Sobic002G188500--Sobic001G194900 Sobic006G138400 Sobic006G138400 Sobic002G188500--Sobic006G138400 Sobic002G188500--Sobic003G145900 Sobic002G188500--Sobic008G160700 Sobic002G188500--Sobic001G490000 Sobic008G160700--Sobic010G001600 Sobic008G160700--Sobic001G194900 Sobic010G078100 Sobic010G078100 Sobic008G160700--Sobic010G078100 Sobic007G130600 Sobic007G130600 Sobic008G160700--Sobic007G130600 Sobic008G160700--Sobic009G235900 Sobic006G214500 Sobic006G214500 Sobic008G160700--Sobic006G214500 Sobic006G124900 Sobic006G124900 Sobic008G160700--Sobic006G124900 Sobic002G303000 Sobic002G303000 Sobic008G160700--Sobic002G303000 Sobic009G027000 Sobic009G027000 Sobic008G160700--Sobic009G027000 Sobic001G490000--Sobic004G037900 Sobic001G490000--Sobic010G001600 Sobic001G490000--Sobic003G005800 Sobic001G490000--Sobic008G160700 Sobic001G373100 Sobic001G373100 Sobic001G490000--Sobic001G373100 Sobic001G490000--Sobic001G151500 Sobic001G490000--Sobic003G145900 Sobic006G114000 Sobic006G114000 Sobic001G490000--Sobic006G114000 Sobic001G490000--Sobic009G235900 Sobic010G001600--Sobic008G160700 Sobic010G001600--Sobic006G124900 Sobic010G001600--Sobic001G194900 Sobic005G177800 Sobic005G177800 Sobic010G001600--Sobic005G177800 Sobic001G543800 Sobic001G543800 Sobic010G001600--Sobic001G543800 Sobic005G130200 Sobic005G130200 Sobic010G001600--Sobic005G130200 Sobic002G300400 Sobic002G300400 Sobic010G001600--Sobic002G300400 Sobic010G276800 Sobic010G276800 Sobic010G001600--Sobic010G276800 Sobic008G024600 Sobic008G024600 Sobic010G001600--Sobic008G024600 Sobic003G005800--Sobic002G188500 Sobic001G443900 Sobic001G443900 Sobic003G005800--Sobic001G443900 Sobic003G005800--Sobic009G235900 Sobic003G005800--Sobic008G160700 Sobic003G005800--Sobic004G037900 Sobic003G005800--Sobic006G138400 Sobic003G005800--Sobic001G194900 Sobic009G121100 Sobic009G121100 Sobic003G005800--Sobic009G121100 Sobic003G005800--Sobic006G214500 Sobic009G119200--Sobic001G373100 Sobic009G119200--Sobic004G037900 Sobic009G119200--Sobic008G160700 Sobic006G149700 Sobic006G149700 Sobic009G119200--Sobic006G149700 Sobic009G119200--Sobic010G001600 Sobic009G119200--Sobic001G490000 Sobic004G153501 Sobic004G153501 Sobic009G119200--Sobic004G153501 Sobic009G119200--Sobic001G151500 Sobic004G153400 Sobic004G153400 Sobic009G119200--Sobic004G153400 Sobic003G145900--Sobic009G235900 Sobic003G145900--Sobic008G160700 Sobic005G007800 Sobic005G007800 Sobic003G145900--Sobic005G007800 Sobic004G330900 Sobic004G330900 Sobic003G145900--Sobic004G330900 Sobic001G221100 Sobic001G221100 Sobic003G145900--Sobic001G221100 Sobic010G042900 Sobic010G042900 Sobic003G145900--Sobic010G042900 Sobic003G145900--Sobic002G303000 Sobic006G114500 Sobic006G114500 Sobic003G145900--Sobic006G114500 Sobic003G145900--Sobic004G037900 Sobic009G235900--Sobic001G194900 Sobic009G235900--Sobic002G188500 Sobic009G235900--Sobic008G160700 Sobic001G359400 Sobic001G359400 Sobic009G235900--Sobic001G359400 Sobic009G235900--Sobic005G007800 Sobic009G235900--Sobic010G042900 Sobic009G235900--Sobic003G005800 Sobic009G235900--Sobic003G145900 Sobic001G347600 Sobic001G347600 Sobic009G235900--Sobic001G347600
Octagon: transcription factors


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