Gene annotation
Transcriptome id Sobic.001G373100.1
Synonym Sb01g035440
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
RING finger and CHY zinc finger domain-containing protein 1, putative, expressed
UniProt C5WZT8
Pfam PF13639 PF14599 PF05495
Panther DB PTHR21319 PTHR21319:SF13
NCBI CDD KOG1940; Zn-finger protein
KEGG Orthology K10144; RCHY1, RING finger and CHY zinc finger domain-containing protein 1
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT5G18650 : CHY-type/CTCHY-type/RING-type Zinc finger protein
RAP-DB (Rice) LOC_Os03g22680.1 : RING finger and CHY zinc finger domain-containing protein 1, putative, expressed
MaizeGDB (Corn) Zm00025a002448
Brachypodium PNT77415 , KQK21692
Barley HORVU4Hr1G010980.10 , HORVU4Hr1G010980.11 , HORVU4Hr1G010980.12 , HORVU4Hr1G010980.9 , HORVU4Hr1G010980.2 , HORVU4Hr1G010980.3 , HORVU4Hr1G010980.1 , HORVU4Hr1G010980.6 , HORVU4Hr1G010980.4 , HORVU4Hr1G010980.5 , HORVU4Hr1G010980.13
Wheat TraesCS4B02G065500 , TraesCS4B02G065500 , TraesCS4A02G249200 , TraesCS4A02G249200 , TraesCS4D02G064500 , TraesCS4D02G064500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G160700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial precursor, putative, expressed K01968: 3-methylcrotonyl-CoA carboxylase alpha subunit
2 Sobic.009G119200 "beta-1,3-glucanase "(PubMedID : 25311645)@glycosyl hydrolases family 17, putative, expressed -
3 Sobic.010G078100 pantothenate kinase, putative, expressed K09680: type II pantothenate kinase
4 Sobic.001G156100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@aminotransferase, putative, expressed K00819: rocD, ornithine--oxo-acid transaminase
5 Sobic.006G149700 DUF584 domain containing protein, putative, expressed -
6 Sobic.009G027000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@acyl-coenzyme A dehydrogenase, mitochondrial precursor, putative, expressed K00253: IVD, isovaleryl-CoA dehydrogenase
7 Sobic.003G145900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyltransferase, putative, expressed K13510: lysophosphatidylcholine acyltransferase / lyso-PAF acetyltransferase
8 Sobic.001G359400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
9 Sobic.002G113300 expressed protein -
10 Sobic.010G001600 homogentisate 1,2-dioxygenase, putative, expressed K00451: HGD, homogentisate 1,2-dioxygenase
11 Sobic.001G490000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@CSLA4 - cellulose synthase-like family A@ mannan synthase, expressed K13680: beta-mannan synthase
12 Sobic.004G037900 GHMP kinases ATP-binding protein, putative, expressed K12446: L-arabinokinase
13 Sobic.009G235900 transporter family protein, putative, expressed K08145: SLC2A8, MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 8
14 Sobic.004G297400 enoyl-CoA hydratase/isomerase family protein, putative, expressed K05607: methylglutaconyl-CoA hydratase
15 Sobic.002G303000 disease resistant protein, identical, putative, expressed -
16 Sobic.009G216100 polygalacturonase, putative, expressed -
17 Sobic.002G152200 AP2-associated protein kinase 1, putative, expressed K08853: AP2-associated kinase
18 Sobic.001G447500 aminotransferase domain containing protein, putative, expressed K00826: E2.6.1.42, branched-chain amino acid aminotransferase
19 Sobic.003G005800 salt stress root protein RS1, putative, expressed -
20 Sobic.009G121100 expressed protein -


Gene co-expression network
sample Sobic001G373100 Sobic001G373100 Sobic008G160700 Sobic008G160700 Sobic001G373100--Sobic008G160700 Sobic009G119200 Sobic009G119200 Sobic001G373100--Sobic009G119200 Sobic010G078100 Sobic010G078100 Sobic001G373100--Sobic010G078100 Sobic001G156100 Sobic001G156100 Sobic001G373100--Sobic001G156100 Sobic006G149700 Sobic006G149700 Sobic001G373100--Sobic006G149700 Sobic009G027000 Sobic009G027000 Sobic001G373100--Sobic009G027000 Sobic003G145900 Sobic003G145900 Sobic001G373100--Sobic003G145900 Sobic001G359400 Sobic001G359400 Sobic001G373100--Sobic001G359400 Sobic002G113300 Sobic002G113300 Sobic001G373100--Sobic002G113300 Sobic010G001600 Sobic010G001600 Sobic008G160700--Sobic010G001600 Sobic001G194900 Sobic001G194900 Sobic008G160700--Sobic001G194900 Sobic008G160700--Sobic010G078100 Sobic007G130600 Sobic007G130600 Sobic008G160700--Sobic007G130600 Sobic009G235900 Sobic009G235900 Sobic008G160700--Sobic009G235900 Sobic006G214500 Sobic006G214500 Sobic008G160700--Sobic006G214500 Sobic006G124900 Sobic006G124900 Sobic008G160700--Sobic006G124900 Sobic002G303000 Sobic002G303000 Sobic008G160700--Sobic002G303000 Sobic008G160700--Sobic009G027000 Sobic009G119200--Sobic001G373100 Sobic004G037900 Sobic004G037900 Sobic009G119200--Sobic004G037900 Sobic009G119200--Sobic008G160700 Sobic009G119200--Sobic006G149700 Sobic009G119200--Sobic010G001600 Sobic001G490000 Sobic001G490000 Sobic009G119200--Sobic001G490000 Sobic004G153501 Sobic004G153501 Sobic009G119200--Sobic004G153501 Sobic001G151500 Sobic001G151500 Sobic009G119200--Sobic001G151500 Sobic004G153400 Sobic004G153400 Sobic009G119200--Sobic004G153400 Sobic010G078100--Sobic008G160700 Sobic010G078100--Sobic002G303000 Sobic009G121100 Sobic009G121100 Sobic010G078100--Sobic009G121100 Sobic010G078100--Sobic006G214500 Sobic010G078100--Sobic009G027000 Sobic010G078100--Sobic001G359400 Sobic010G078100--Sobic001G373100 Sobic006G122400 Sobic006G122400 Sobic010G078100--Sobic006G122400 Sobic004G295800 Sobic004G295800 Sobic010G078100--Sobic004G295800 Sobic001G156100--Sobic009G121100 Sobic001G447500 Sobic001G447500 Sobic001G156100--Sobic001G447500 Sobic001G156100--Sobic006G214500 Sobic002G152200 Sobic002G152200 Sobic001G156100--Sobic002G152200 Sobic009G229800 Sobic009G229800 Sobic001G156100--Sobic009G229800 Sobic001G156100--Sobic008G160700 Sobic001G156100--Sobic009G027000 Sobic001G373200 Sobic001G373200 Sobic001G156100--Sobic001G373200 Sobic001G156100--Sobic004G295800 Sobic006G149700--Sobic001G373100 Sobic006G149700--Sobic009G119200 Sobic006G149700--Sobic001G156100 Sobic006G149700--Sobic001G490000 Sobic003G093300 Sobic003G093300 Sobic006G149700--Sobic003G093300 Sobic006G149700--Sobic004G037900 Sobic006G149700--Sobic002G113300 Sobic009G216100 Sobic009G216100 Sobic006G149700--Sobic009G216100 Sobic006G149700--Sobic010G001600 Sobic009G027000--Sobic006G122400 Sobic005G181000 Sobic005G181000 Sobic009G027000--Sobic005G181000 Sobic009G027000--Sobic008G160700 Sobic004G297400 Sobic004G297400 Sobic009G027000--Sobic004G297400 Sobic009G027000--Sobic010G078100 Sobic009G027000--Sobic007G130600 Sobic009G027000--Sobic001G156100 Sobic007G078000 Sobic007G078000 Sobic009G027000--Sobic007G078000 Sobic004G320000 Sobic004G320000 Sobic009G027000--Sobic004G320000 Sobic003G145900--Sobic009G235900 Sobic003G145900--Sobic008G160700 Sobic005G007800 Sobic005G007800 Sobic003G145900--Sobic005G007800 Sobic004G330900 Sobic004G330900 Sobic003G145900--Sobic004G330900 Sobic001G221100 Sobic001G221100 Sobic003G145900--Sobic001G221100 Sobic010G042900 Sobic010G042900 Sobic003G145900--Sobic010G042900 Sobic003G145900--Sobic002G303000 Sobic006G114500 Sobic006G114500 Sobic003G145900--Sobic006G114500 Sobic003G145900--Sobic004G037900 Sobic001G359400--Sobic009G235900 Sobic001G359400--Sobic010G078100 Sobic001G359400--Sobic005G007800 Sobic001G359400--Sobic010G042900 Sobic001G359400--Sobic002G303000 Sobic002G009600 Sobic002G009600 Sobic001G359400--Sobic002G009600 Sobic001G347600 Sobic001G347600 Sobic001G359400--Sobic001G347600 Sobic001G359400--Sobic001G373100 Sobic001G359400--Sobic008G160700 Sobic006G127100 Sobic006G127100 Sobic002G113300--Sobic006G127100 Sobic007G219900 Sobic007G219900 Sobic002G113300--Sobic007G219900 Sobic002G113300--Sobic001G156100 Sobic003G009100 Sobic003G009100 Sobic002G113300--Sobic003G009100 Sobic002G113300--Sobic001G373100 Sobic004G345800 Sobic004G345800 Sobic002G113300--Sobic004G345800 Sobic008G021800 Sobic008G021800 Sobic002G113300--Sobic008G021800 Sobic002G113300--Sobic001G447500 Sobic003G241000 Sobic003G241000 Sobic002G113300--Sobic003G241000
Octagon: transcription factors


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