Gene annotation
Transcriptome id Sobic.008G160700.2,Sobic.008G160700.1
Synonym Sb08g020810, MCCA
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial precursor, putative, expressed
UniProt A0A1Z5R6W8 , A0A1Z5R7X6
Pfam PF00364 PF13535 PF02785 PF00364 PF13535 PF02785 PF00289
Panther DB PTHR18866
NCBI CDD -
KEGG Orthology K01968; 3-methylcrotonyl-CoA carboxylase alpha subunit
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G03090 : methylcrotonyl-CoA carboxylase alpha chain, mitochondrial / 3-methylcrotonyl-CoA carboxylase 1 (MCCA)
RAP-DB (Rice) LOC_Os12g41250.1 : methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial precursor, putative, expressed
MaizeGDB (Corn) Zm00025a004630
Brachypodium KQJ85907
Barley HORVU5Hr1G012900.5 , HORVU5Hr1G012900.4 , HORVU5Hr1G012900.7 , HORVU5Hr1G012900.6 , HORVU5Hr1G012900.1 , HORVU5Hr1G012900.3 , HORVU5Hr1G012900.2 , HORVU5Hr1G012900.9 , HORVU5Hr1G012900.8 , HORVU5Hr1G012900.11 , HORVU5Hr1G012900.10 , HORVU5Hr1G012900.13 , HORVU5Hr1G012900.12 , HORVU5Hr1G012900.15 , HORVU5Hr1G012900.14
Wheat TraesCS5D02G065100 , TraesCS5D02G065100 , TraesCS5D02G065100 , TraesCS5B02G062500 , TraesCS5A02G053700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G001600 homogentisate 1,2-dioxygenase, putative, expressed K00451: HGD, homogentisate 1,2-dioxygenase
2 Sobic.001G194900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FAD dependent oxidoreductase domain containing protein, expressed K00311: electron-transferring-flavoprotein dehydrogenase
3 Sobic.010G078100 pantothenate kinase, putative, expressed K09680: type II pantothenate kinase
4 Sobic.007G130600 methylcrotonoyl-CoA carboxylase beta chain, mitochondrial precursor, putative, expressed K01969: 3-methylcrotonyl-CoA carboxylase beta subunit
5 Sobic.009G235900 transporter family protein, putative, expressed K08145: SLC2A8, MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 8
6 Sobic.006G214500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@lecithine cholesterol acyltransferase, putative, expressed -
7 Sobic.006G124900 MA3 domain containing protein, expressed -
8 Sobic.002G303000 disease resistant protein, identical, putative, expressed -
9 Sobic.009G027000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@acyl-coenzyme A dehydrogenase, mitochondrial precursor, putative, expressed K00253: IVD, isovaleryl-CoA dehydrogenase
10 Sobic.009G121100 expressed protein -
11 Sobic.002G300400 serine/threonine-protein kinase CTR1, putative, expressed -
12 Sobic.001G373100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@RING finger and CHY zinc finger domain-containing protein 1, putative, expressed K10144: RCHY1, RING finger and CHY zinc finger domain-containing protein 1
13 Sobic.001G543800 ethylene-responsive element-binding protein, putative, expressed -
14 Sobic.001G156100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@aminotransferase, putative, expressed K00819: rocD, ornithine--oxo-acid transaminase
15 Sobic.004G037900 GHMP kinases ATP-binding protein, putative, expressed K12446: L-arabinokinase
16 Sobic.003G005800 salt stress root protein RS1, putative, expressed -
17 Sobic.003G145900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyltransferase, putative, expressed K13510: lysophosphatidylcholine acyltransferase / lyso-PAF acetyltransferase
18 Sobic.005G177800 helix-loop-helix DNA-binding domain containing protein, expressed -
19 Sobic.004G196700 expressed protein -
20 Sobic.010G276800 pollen signalling protein with adenylyl cyclase activity, putative, expressed -


Gene co-expression network
sample Sobic008G160700 Sobic008G160700 Sobic010G001600 Sobic010G001600 Sobic008G160700--Sobic010G001600 Sobic001G194900 Sobic001G194900 Sobic008G160700--Sobic001G194900 Sobic010G078100 Sobic010G078100 Sobic008G160700--Sobic010G078100 Sobic007G130600 Sobic007G130600 Sobic008G160700--Sobic007G130600 Sobic009G235900 Sobic009G235900 Sobic008G160700--Sobic009G235900 Sobic006G214500 Sobic006G214500 Sobic008G160700--Sobic006G214500 Sobic006G124900 Sobic006G124900 Sobic008G160700--Sobic006G124900 Sobic002G303000 Sobic002G303000 Sobic008G160700--Sobic002G303000 Sobic009G027000 Sobic009G027000 Sobic008G160700--Sobic009G027000 Sobic010G001600--Sobic008G160700 Sobic010G001600--Sobic006G124900 Sobic010G001600--Sobic001G194900 Sobic005G177800 Sobic005G177800 Sobic010G001600--Sobic005G177800 Sobic001G543800 Sobic001G543800 Sobic010G001600--Sobic001G543800 Sobic005G130200 Sobic005G130200 Sobic010G001600--Sobic005G130200 Sobic002G300400 Sobic002G300400 Sobic010G001600--Sobic002G300400 Sobic010G276800 Sobic010G276800 Sobic010G001600--Sobic010G276800 Sobic008G024600 Sobic008G024600 Sobic010G001600--Sobic008G024600 Sobic001G194900--Sobic008G160700 Sobic001G194900--Sobic010G001600 Sobic001G194900--Sobic007G130600 Sobic005G187200 Sobic005G187200 Sobic001G194900--Sobic005G187200 Sobic001G194900--Sobic001G543800 Sobic001G194900--Sobic009G235900 Sobic001G424700 Sobic001G424700 Sobic001G194900--Sobic001G424700 Sobic001G194900--Sobic005G177800 Sobic001G194900--Sobic005G130200 Sobic010G078100--Sobic008G160700 Sobic010G078100--Sobic002G303000 Sobic009G121100 Sobic009G121100 Sobic010G078100--Sobic009G121100 Sobic010G078100--Sobic006G214500 Sobic010G078100--Sobic009G027000 Sobic001G359400 Sobic001G359400 Sobic010G078100--Sobic001G359400 Sobic001G373100 Sobic001G373100 Sobic010G078100--Sobic001G373100 Sobic006G122400 Sobic006G122400 Sobic010G078100--Sobic006G122400 Sobic004G295800 Sobic004G295800 Sobic010G078100--Sobic004G295800 Sobic007G130600--Sobic001G194900 Sobic005G181000 Sobic005G181000 Sobic007G130600--Sobic005G181000 Sobic007G130600--Sobic008G160700 Sobic007G130600--Sobic006G124900 Sobic007G130600--Sobic005G177800 Sobic007G130600--Sobic009G027000 Sobic007G130600--Sobic010G001600 Sobic009G083900 Sobic009G083900 Sobic007G130600--Sobic009G083900 Sobic007G078000 Sobic007G078000 Sobic007G130600--Sobic007G078000 Sobic009G235900--Sobic001G194900 Sobic002G188500 Sobic002G188500 Sobic009G235900--Sobic002G188500 Sobic009G235900--Sobic008G160700 Sobic009G235900--Sobic001G359400 Sobic005G007800 Sobic005G007800 Sobic009G235900--Sobic005G007800 Sobic010G042900 Sobic010G042900 Sobic009G235900--Sobic010G042900 Sobic003G005800 Sobic003G005800 Sobic009G235900--Sobic003G005800 Sobic003G145900 Sobic003G145900 Sobic009G235900--Sobic003G145900 Sobic001G347600 Sobic001G347600 Sobic009G235900--Sobic001G347600 Sobic006G214500--Sobic009G121100 Sobic001G443900 Sobic001G443900 Sobic006G214500--Sobic001G443900 Sobic003G408500 Sobic003G408500 Sobic006G214500--Sobic003G408500 Sobic006G214500--Sobic008G160700 Sobic006G214500--Sobic010G078100 Sobic001G156100 Sobic001G156100 Sobic006G214500--Sobic001G156100 Sobic003G407300 Sobic003G407300 Sobic006G214500--Sobic003G407300 Sobic001G447500 Sobic001G447500 Sobic006G214500--Sobic001G447500 Sobic009G249200 Sobic009G249200 Sobic006G214500--Sobic009G249200 Sobic006G124900--Sobic005G177800 Sobic006G124900--Sobic010G001600 Sobic004G196700 Sobic004G196700 Sobic006G124900--Sobic004G196700 Sobic006G124900--Sobic001G543800 Sobic006G124900--Sobic010G276800 Sobic002G313300 Sobic002G313300 Sobic006G124900--Sobic002G313300 Sobic001G477800 Sobic001G477800 Sobic006G124900--Sobic001G477800 Sobic006G124900--Sobic007G130600 Sobic006G124900--Sobic002G300400 Sobic002G303000--Sobic010G078100 Sobic002G303000--Sobic009G121100 Sobic002G303000--Sobic008G160700 Sobic002G303000--Sobic003G407300 Sobic009G040700 Sobic009G040700 Sobic002G303000--Sobic009G040700 Sobic002G303000--Sobic005G007800 Sobic002G303000--Sobic004G196700 Sobic002G303000--Sobic009G235900 Sobic002G303000--Sobic008G024600 Sobic009G027000--Sobic006G122400 Sobic009G027000--Sobic005G181000 Sobic009G027000--Sobic008G160700 Sobic004G297400 Sobic004G297400 Sobic009G027000--Sobic004G297400 Sobic009G027000--Sobic010G078100 Sobic009G027000--Sobic007G130600 Sobic009G027000--Sobic001G156100 Sobic009G027000--Sobic007G078000 Sobic004G320000 Sobic004G320000 Sobic009G027000--Sobic004G320000
Octagon: transcription factors


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