Gene annotation
Transcriptome id Sobic.006G124900.1
Synonym Sb06g020520
Functional annotation MA3 domain containing protein, expressed
UniProt C5YAV4
Pfam PF02847
Panther DB PTHR12626 PTHR12626:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G63190 : MA3 domain-containing protein
RAP-DB (Rice) LOC_Os04g40660.1 : MA3 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a010966
Brachypodium KQJ83209 , KQJ83210
Barley HORVU2Hr1G083610.4 , HORVU2Hr1G083610.5 , HORVU2Hr1G083610.1 , HORVU2Hr1G083610.2 , HORVU2Hr1G083610.3 , HORVU7Hr1G108810.5 , HORVU7Hr1G108810.7 , HORVU7Hr1G108810.6 , HORVU7Hr1G108810.3 , HORVU7Hr1G108810.2
Wheat TraesCS2A02G322400 , TraesCS2A02G322400 , TraesCS2D02G340700 , TraesCS2D02G340700 , TraesCS2B02G360400 , TraesCS2B02G360400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G177800 helix-loop-helix DNA-binding domain containing protein, expressed -
2 Sobic.010G001600 homogentisate 1,2-dioxygenase, putative, expressed K00451: HGD, homogentisate 1,2-dioxygenase
3 Sobic.004G196700 expressed protein -
4 Sobic.001G543800 ethylene-responsive element-binding protein, putative, expressed -
5 Sobic.010G276800 pollen signalling protein with adenylyl cyclase activity, putative, expressed -
6 Sobic.002G313300 bromodomain domain containing protein, expressed -
7 Sobic.001G477800 expressed protein -
8 Sobic.007G130600 methylcrotonoyl-CoA carboxylase beta chain, mitochondrial precursor, putative, expressed K01969: 3-methylcrotonyl-CoA carboxylase beta subunit
9 Sobic.002G300400 serine/threonine-protein kinase CTR1, putative, expressed -
10 Sobic.008G160700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial precursor, putative, expressed K01968: 3-methylcrotonyl-CoA carboxylase alpha subunit
11 Sobic.005G130200 - -
12 Sobic.007G185900 IBR domain containing protein, putative, expressed K11968: ariadne-1
13 Sobic.007G078000 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
14 Sobic.004G031700 expressed protein -
15 Sobic.001G194900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FAD dependent oxidoreductase domain containing protein, expressed K00311: electron-transferring-flavoprotein dehydrogenase
16 Sobic.001G543900 H(+)-ATPase 7(PubMedID : 26320239)@E1-E2 ATPase domain containing protein, expressed K01535: PMA1, H+-transporting ATPase
17 Sobic.004G256600 KH domain containing protein, putative, expressed K14945: protein quaking
18 Sobic.004G082500 OsFBA1 - F-box and FBA domain containing protein, expressed -
19 Sobic.009G040700 "OsPPKL2(Ortholog in rice:Zhan et al., 2012)"(PubMedID : 31659919)@serine/threonine protein phosphatase, putative, expressed K01090: protein phosphatase
20 Sobic.009G156000 arginyl-tRNA--protein transferase 1, putative, expressed K00685: arginyl-tRNA---protein transferase


Gene co-expression network
sample Sobic006G124900 Sobic006G124900 Sobic005G177800 Sobic005G177800 Sobic006G124900--Sobic005G177800 Sobic010G001600 Sobic010G001600 Sobic006G124900--Sobic010G001600 Sobic004G196700 Sobic004G196700 Sobic006G124900--Sobic004G196700 Sobic001G543800 Sobic001G543800 Sobic006G124900--Sobic001G543800 Sobic010G276800 Sobic010G276800 Sobic006G124900--Sobic010G276800 Sobic002G313300 Sobic002G313300 Sobic006G124900--Sobic002G313300 Sobic001G477800 Sobic001G477800 Sobic006G124900--Sobic001G477800 Sobic007G130600 Sobic007G130600 Sobic006G124900--Sobic007G130600 Sobic002G300400 Sobic002G300400 Sobic006G124900--Sobic002G300400 Sobic005G177800--Sobic006G124900 Sobic005G177800--Sobic004G196700 Sobic005G177800--Sobic010G001600 Sobic005G177800--Sobic001G543800 Sobic004G031700 Sobic004G031700 Sobic005G177800--Sobic004G031700 Sobic005G177800--Sobic001G477800 Sobic007G078000 Sobic007G078000 Sobic005G177800--Sobic007G078000 Sobic005G177800--Sobic002G313300 Sobic009G000500 Sobic009G000500 Sobic005G177800--Sobic009G000500 Sobic008G160700 Sobic008G160700 Sobic010G001600--Sobic008G160700 Sobic010G001600--Sobic006G124900 Sobic001G194900 Sobic001G194900 Sobic010G001600--Sobic001G194900 Sobic010G001600--Sobic005G177800 Sobic010G001600--Sobic001G543800 Sobic005G130200 Sobic005G130200 Sobic010G001600--Sobic005G130200 Sobic010G001600--Sobic002G300400 Sobic010G001600--Sobic010G276800 Sobic008G024600 Sobic008G024600 Sobic010G001600--Sobic008G024600 Sobic007G185900 Sobic007G185900 Sobic004G196700--Sobic007G185900 Sobic004G196700--Sobic007G078000 Sobic005G149500 Sobic005G149500 Sobic004G196700--Sobic005G149500 Sobic007G137900 Sobic007G137900 Sobic004G196700--Sobic007G137900 Sobic002G157300 Sobic002G157300 Sobic004G196700--Sobic002G157300 Sobic003G187400 Sobic003G187400 Sobic004G196700--Sobic003G187400 Sobic004G196700--Sobic001G477800 Sobic006G082600 Sobic006G082600 Sobic004G196700--Sobic006G082600 Sobic009G040700 Sobic009G040700 Sobic004G196700--Sobic009G040700 Sobic001G543800--Sobic010G001600 Sobic001G543800--Sobic005G177800 Sobic006G128900 Sobic006G128900 Sobic001G543800--Sobic006G128900 Sobic001G543800--Sobic006G124900 Sobic001G543800--Sobic001G194900 Sobic001G543800--Sobic004G196700 Sobic001G543800--Sobic008G024600 Sobic001G543800--Sobic009G040700 Sobic004G256600 Sobic004G256600 Sobic001G543800--Sobic004G256600 Sobic010G276800--Sobic006G124900 Sobic010G276800--Sobic008G024600 Sobic010G276800--Sobic010G001600 Sobic008G042600 Sobic008G042600 Sobic010G276800--Sobic008G042600 Sobic010G276800--Sobic001G543800 Sobic010G276800--Sobic009G040700 Sobic003G008500 Sobic003G008500 Sobic010G276800--Sobic003G008500 Sobic010G276800--Sobic004G256600 Sobic010G276800--Sobic005G177800 Sobic002G313300--Sobic001G477800 Sobic002G077200 Sobic002G077200 Sobic002G313300--Sobic002G077200 Sobic007G011400 Sobic007G011400 Sobic002G313300--Sobic007G011400 Sobic010G263800 Sobic010G263800 Sobic002G313300--Sobic010G263800 Sobic001G543900 Sobic001G543900 Sobic002G313300--Sobic001G543900 Sobic006G080300 Sobic006G080300 Sobic002G313300--Sobic006G080300 Sobic006G009400 Sobic006G009400 Sobic002G313300--Sobic006G009400 Sobic002G313300--Sobic007G185900 Sobic002G313300--Sobic004G031700 Sobic001G477800--Sobic002G313300 Sobic001G477800--Sobic004G031700 Sobic001G094000 Sobic001G094000 Sobic001G477800--Sobic001G094000 Sobic001G544200 Sobic001G544200 Sobic001G477800--Sobic001G544200 Sobic001G477800--Sobic001G543900 Sobic001G477800--Sobic006G080300 Sobic001G477800--Sobic009G040700 Sobic001G477800--Sobic007G011400 Sobic001G477800--Sobic006G009400 Sobic007G130600--Sobic001G194900 Sobic005G181000 Sobic005G181000 Sobic007G130600--Sobic005G181000 Sobic007G130600--Sobic008G160700 Sobic007G130600--Sobic006G124900 Sobic007G130600--Sobic005G177800 Sobic009G027000 Sobic009G027000 Sobic007G130600--Sobic009G027000 Sobic007G130600--Sobic010G001600 Sobic009G083900 Sobic009G083900 Sobic007G130600--Sobic009G083900 Sobic007G130600--Sobic007G078000 Sobic002G300400--Sobic010G001600 Sobic002G300400--Sobic006G124900 Sobic002G300400--Sobic001G543800 Sobic010G264100 Sobic010G264100 Sobic002G300400--Sobic010G264100 Sobic002G300400--Sobic008G160700 Sobic002G165300 Sobic002G165300 Sobic002G300400--Sobic002G165300 Sobic002G300400--Sobic005G177800 Sobic002G300400--Sobic007G130600 Sobic002G300400--Sobic001G194900
Octagon: transcription factors


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