Gene annotation
Transcriptome id Sobic.007G130600.1
Synonym Sb07g020640, MCCB
Functional annotation methylcrotonoyl-CoA carboxylase beta chain, mitochondrial precursor, putative, expressed
UniProt C5YL06
Pfam PF01039
Panther DB PTHR22855 PTHR22855:SF13
NCBI CDD -
KEGG Orthology K01969; 3-methylcrotonyl-CoA carboxylase beta subunit
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G34030 : 3-methylcrotonyl-CoA carboxylase
RAP-DB (Rice) LOC_Os08g32850.1 : methylcrotonoyl-CoA carboxylase beta chain, mitochondrial precursor, putative, expressed
MaizeGDB (Corn) Zm00025a031067
Brachypodium KQJ98311 , PNT68115
Barley -
Wheat TraesCS4A02G401400 , TraesCS4A02G401400 , TraesCS7D02G096600 , TraesCS7A02G102600
Populus -


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cDNA sequences
Sobic.007G130600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G194900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@FAD dependent oxidoreductase domain containing protein, expressed K00311: electron-transferring-flavoprotein dehydrogenase
2 Sobic.005G181000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Acyl-CoA oxidase 2 ACX2 (At)(PubMedID : 27208977)@Acyl-CoA oxidase 2 ACX2 (At)(PubMedID : 27208977)@acyl-coenzyme A oxidase, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
3 Sobic.008G160700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial precursor, putative, expressed K01968: 3-methylcrotonyl-CoA carboxylase alpha subunit
4 Sobic.006G124900 MA3 domain containing protein, expressed -
5 Sobic.005G177800 helix-loop-helix DNA-binding domain containing protein, expressed -
6 Sobic.009G027000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@acyl-coenzyme A dehydrogenase, mitochondrial precursor, putative, expressed K00253: IVD, isovaleryl-CoA dehydrogenase
7 Sobic.010G001600 homogentisate 1,2-dioxygenase, putative, expressed K00451: HGD, homogentisate 1,2-dioxygenase
8 Sobic.009G083900 C-5 cytosine-specific DNA methylase, putative, expressed K00558: DNMT1, DNA (cytosine-5)-methyltransferase 1
9 Sobic.007G078000 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
10 Sobic.002G300400 serine/threonine-protein kinase CTR1, putative, expressed -
11 Sobic.005G187200 expressed protein -
12 Sobic.007G185900 IBR domain containing protein, putative, expressed K11968: ariadne-1
13 Sobic.004G196700 expressed protein -
14 Sobic.002G313300 bromodomain domain containing protein, expressed -
15 Sobic.006G122400 uncharacterized glycosyltransferase, putative, expressed -
16 Sobic.009G235900 transporter family protein, putative, expressed K08145: SLC2A8, MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 8
17 Sobic.001G477800 expressed protein -
18 Sobic.001G543800 ethylene-responsive element-binding protein, putative, expressed -
19 Sobic.004G031700 expressed protein -
20 Sobic.009G000500 pex14, putative, expressed K13343: peroxin-14


Gene co-expression network
sample Sobic007G130600 Sobic007G130600 Sobic001G194900 Sobic001G194900 Sobic007G130600--Sobic001G194900 Sobic005G181000 Sobic005G181000 Sobic007G130600--Sobic005G181000 Sobic008G160700 Sobic008G160700 Sobic007G130600--Sobic008G160700 Sobic006G124900 Sobic006G124900 Sobic007G130600--Sobic006G124900 Sobic005G177800 Sobic005G177800 Sobic007G130600--Sobic005G177800 Sobic009G027000 Sobic009G027000 Sobic007G130600--Sobic009G027000 Sobic010G001600 Sobic010G001600 Sobic007G130600--Sobic010G001600 Sobic009G083900 Sobic009G083900 Sobic007G130600--Sobic009G083900 Sobic007G078000 Sobic007G078000 Sobic007G130600--Sobic007G078000 Sobic001G194900--Sobic008G160700 Sobic001G194900--Sobic010G001600 Sobic001G194900--Sobic007G130600 Sobic005G187200 Sobic005G187200 Sobic001G194900--Sobic005G187200 Sobic001G543800 Sobic001G543800 Sobic001G194900--Sobic001G543800 Sobic009G235900 Sobic009G235900 Sobic001G194900--Sobic009G235900 Sobic001G424700 Sobic001G424700 Sobic001G194900--Sobic001G424700 Sobic001G194900--Sobic005G177800 Sobic005G130200 Sobic005G130200 Sobic001G194900--Sobic005G130200 Sobic005G181000--Sobic007G130600 Sobic005G181000--Sobic009G027000 Sobic006G122400 Sobic006G122400 Sobic005G181000--Sobic006G122400 Sobic005G181000--Sobic006G124900 Sobic001G439500 Sobic001G439500 Sobic005G181000--Sobic001G439500 Sobic002G253500 Sobic002G253500 Sobic005G181000--Sobic002G253500 Sobic007G185900 Sobic007G185900 Sobic005G181000--Sobic007G185900 Sobic002G313300 Sobic002G313300 Sobic005G181000--Sobic002G313300 Sobic002G039500 Sobic002G039500 Sobic005G181000--Sobic002G039500 Sobic008G160700--Sobic010G001600 Sobic008G160700--Sobic001G194900 Sobic010G078100 Sobic010G078100 Sobic008G160700--Sobic010G078100 Sobic008G160700--Sobic007G130600 Sobic008G160700--Sobic009G235900 Sobic006G214500 Sobic006G214500 Sobic008G160700--Sobic006G214500 Sobic008G160700--Sobic006G124900 Sobic002G303000 Sobic002G303000 Sobic008G160700--Sobic002G303000 Sobic008G160700--Sobic009G027000 Sobic006G124900--Sobic005G177800 Sobic006G124900--Sobic010G001600 Sobic004G196700 Sobic004G196700 Sobic006G124900--Sobic004G196700 Sobic006G124900--Sobic001G543800 Sobic010G276800 Sobic010G276800 Sobic006G124900--Sobic010G276800 Sobic006G124900--Sobic002G313300 Sobic001G477800 Sobic001G477800 Sobic006G124900--Sobic001G477800 Sobic006G124900--Sobic007G130600 Sobic002G300400 Sobic002G300400 Sobic006G124900--Sobic002G300400 Sobic005G177800--Sobic006G124900 Sobic005G177800--Sobic004G196700 Sobic005G177800--Sobic010G001600 Sobic005G177800--Sobic001G543800 Sobic004G031700 Sobic004G031700 Sobic005G177800--Sobic004G031700 Sobic005G177800--Sobic001G477800 Sobic005G177800--Sobic007G078000 Sobic005G177800--Sobic002G313300 Sobic009G000500 Sobic009G000500 Sobic005G177800--Sobic009G000500 Sobic009G027000--Sobic006G122400 Sobic009G027000--Sobic005G181000 Sobic009G027000--Sobic008G160700 Sobic004G297400 Sobic004G297400 Sobic009G027000--Sobic004G297400 Sobic009G027000--Sobic010G078100 Sobic009G027000--Sobic007G130600 Sobic001G156100 Sobic001G156100 Sobic009G027000--Sobic001G156100 Sobic009G027000--Sobic007G078000 Sobic004G320000 Sobic004G320000 Sobic009G027000--Sobic004G320000 Sobic010G001600--Sobic008G160700 Sobic010G001600--Sobic006G124900 Sobic010G001600--Sobic001G194900 Sobic010G001600--Sobic005G177800 Sobic010G001600--Sobic001G543800 Sobic010G001600--Sobic005G130200 Sobic010G001600--Sobic002G300400 Sobic010G001600--Sobic010G276800 Sobic008G024600 Sobic008G024600 Sobic010G001600--Sobic008G024600 Sobic001G413500 Sobic001G413500 Sobic009G083900--Sobic001G413500 Sobic004G240800 Sobic004G240800 Sobic009G083900--Sobic004G240800 Sobic001G497300 Sobic001G497300 Sobic009G083900--Sobic001G497300 Sobic009G083900--Sobic007G185900 Sobic009G083900--Sobic009G000500 Sobic009G083900--Sobic004G196700 Sobic004G145500 Sobic004G145500 Sobic009G083900--Sobic004G145500 Sobic008G054500 Sobic008G054500 Sobic009G083900--Sobic008G054500 Sobic005G045300 Sobic005G045300 Sobic009G083900--Sobic005G045300 Sobic003G333600 Sobic003G333600 Sobic007G078000--Sobic003G333600 Sobic007G078000--Sobic004G196700 Sobic007G078000--Sobic007G185900 Sobic010G260500 Sobic010G260500 Sobic007G078000--Sobic010G260500 Sobic007G078000--Sobic001G424700 Sobic005G149500 Sobic005G149500 Sobic007G078000--Sobic005G149500 Sobic001G372700 Sobic001G372700 Sobic007G078000--Sobic001G372700 Sobic001G451000 Sobic001G451000 Sobic007G078000--Sobic001G451000 Sobic006G082600 Sobic006G082600 Sobic007G078000--Sobic006G082600
Octagon: transcription factors


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