Gene annotation
Transcriptome id Sobic.009G027000.1
Synonym IVD, Sb09g002260, ATIVD, IVDH
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
acyl-coenzyme A dehydrogenase, mitochondrial precursor, putative, expressed
UniProt C5YZ44
Pfam PF02770 PF08028 PF02771
Panther DB PTHR10909 PTHR10909:SF332
NCBI CDD -
KEGG Orthology K00253; IVD, isovaleryl-CoA dehydrogenase
Gene Ontology GO:0003995; acyl-CoA dehydrogenase activity GO:0016627oxidoreductase activity, acting on the CH-CH group of donors GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR AT3G45300 : isovaleryl-CoA-dehydrogenase
RAP-DB (Rice) LOC_Os05g03480.2 : acyl-coenzyme A dehydrogenase, mitochondrial precursor, putative, expressed
MaizeGDB (Corn) Zm00025a040729 , Zm00025a038187
Brachypodium PNT71982 , KQK07864
Barley HORVU1Hr1G013820.14 , HORVU1Hr1G013820.11 , HORVU1Hr1G013820.10 , HORVU1Hr1G013820.13 , HORVU1Hr1G013820.12 , HORVU1Hr1G013820.1 , HORVU1Hr1G013820.3 , HORVU1Hr1G013820.2 , HORVU1Hr1G013820.5 , HORVU1Hr1G013820.4 , HORVU1Hr1G013820.7 , HORVU1Hr1G013820.6 , HORVU1Hr1G013820.9 , HORVU1Hr1G013820.8
Wheat TraesCS1A02G066800 , TraesCS1D02G067800 , TraesCS1D02G067800 , TraesCS1B02G085100 , TraesCS1B02G085100
Populus -


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cDNA sequences
Sobic.009G027000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G122400 uncharacterized glycosyltransferase, putative, expressed -
2 Sobic.005G181000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Acyl-CoA oxidase 2 ACX2 (At)(PubMedID : 27208977)@Acyl-CoA oxidase 2 ACX2 (At)(PubMedID : 27208977)@acyl-coenzyme A oxidase, putative, expressed K00232: E1.3.3.6, ACOX1, acyl-CoA oxidase
3 Sobic.008G160700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial precursor, putative, expressed K01968: 3-methylcrotonyl-CoA carboxylase alpha subunit
4 Sobic.004G297400 enoyl-CoA hydratase/isomerase family protein, putative, expressed K05607: methylglutaconyl-CoA hydratase
5 Sobic.010G078100 pantothenate kinase, putative, expressed K09680: type II pantothenate kinase
6 Sobic.007G130600 methylcrotonoyl-CoA carboxylase beta chain, mitochondrial precursor, putative, expressed K01969: 3-methylcrotonyl-CoA carboxylase beta subunit
7 Sobic.001G156100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@aminotransferase, putative, expressed K00819: rocD, ornithine--oxo-acid transaminase
8 Sobic.007G078000 protein phosphatase 2C, putative, expressed K17506: PPM1L, protein phosphatase 1L
9 Sobic.004G320000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.006G124900 MA3 domain containing protein, expressed -
11 Sobic.009G216100 polygalacturonase, putative, expressed -
12 Sobic.004G034400 plant-specific domain TIGR01589 family protein, putative, expressed -
13 Sobic.001G373100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@RING finger and CHY zinc finger domain-containing protein 1, putative, expressed K10144: RCHY1, RING finger and CHY zinc finger domain-containing protein 1
14 Sobic.010G260500 pre-mRNA-splicing factor syf2, putative, expressed K12868: pre-mRNA-splicing factor SYF2
15 Sobic.010G042900 expressed protein -
16 Sobic.001G028700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.004G196700 expressed protein -
18 Sobic.010G218100 expressed protein -
19 Sobic.002G284200 peroxisomal multifunctional enzyme type 2, putative, expressed -
20 Sobic.001G451000 two-component response regulator, putative, expressed K14491: two-component response regulator ARR-B family


Gene co-expression network
sample Sobic009G027000 Sobic009G027000 Sobic006G122400 Sobic006G122400 Sobic009G027000--Sobic006G122400 Sobic005G181000 Sobic005G181000 Sobic009G027000--Sobic005G181000 Sobic008G160700 Sobic008G160700 Sobic009G027000--Sobic008G160700 Sobic004G297400 Sobic004G297400 Sobic009G027000--Sobic004G297400 Sobic010G078100 Sobic010G078100 Sobic009G027000--Sobic010G078100 Sobic007G130600 Sobic007G130600 Sobic009G027000--Sobic007G130600 Sobic001G156100 Sobic001G156100 Sobic009G027000--Sobic001G156100 Sobic007G078000 Sobic007G078000 Sobic009G027000--Sobic007G078000 Sobic004G320000 Sobic004G320000 Sobic009G027000--Sobic004G320000 Sobic006G122400--Sobic009G027000 Sobic010G218100 Sobic010G218100 Sobic006G122400--Sobic010G218100 Sobic006G122400--Sobic005G181000 Sobic002G284200 Sobic002G284200 Sobic006G122400--Sobic002G284200 Sobic006G124900 Sobic006G124900 Sobic006G122400--Sobic006G124900 Sobic002G165300 Sobic002G165300 Sobic006G122400--Sobic002G165300 Sobic006G122400--Sobic007G078000 Sobic010G218500 Sobic010G218500 Sobic006G122400--Sobic010G218500 Sobic006G122400--Sobic007G130600 Sobic005G181000--Sobic007G130600 Sobic005G181000--Sobic009G027000 Sobic005G181000--Sobic006G122400 Sobic005G181000--Sobic006G124900 Sobic001G439500 Sobic001G439500 Sobic005G181000--Sobic001G439500 Sobic002G253500 Sobic002G253500 Sobic005G181000--Sobic002G253500 Sobic007G185900 Sobic007G185900 Sobic005G181000--Sobic007G185900 Sobic002G313300 Sobic002G313300 Sobic005G181000--Sobic002G313300 Sobic002G039500 Sobic002G039500 Sobic005G181000--Sobic002G039500 Sobic010G001600 Sobic010G001600 Sobic008G160700--Sobic010G001600 Sobic001G194900 Sobic001G194900 Sobic008G160700--Sobic001G194900 Sobic008G160700--Sobic010G078100 Sobic008G160700--Sobic007G130600 Sobic009G235900 Sobic009G235900 Sobic008G160700--Sobic009G235900 Sobic006G214500 Sobic006G214500 Sobic008G160700--Sobic006G214500 Sobic008G160700--Sobic006G124900 Sobic002G303000 Sobic002G303000 Sobic008G160700--Sobic002G303000 Sobic008G160700--Sobic009G027000 Sobic004G297400--Sobic009G027000 Sobic001G028700 Sobic001G028700 Sobic004G297400--Sobic001G028700 Sobic004G297400--Sobic006G122400 Sobic004G297400--Sobic010G078100 Sobic010G042900 Sobic010G042900 Sobic004G297400--Sobic010G042900 Sobic004G297400--Sobic008G160700 Sobic001G111366 Sobic001G111366 Sobic004G297400--Sobic001G111366 Sobic007G002200 Sobic007G002200 Sobic004G297400--Sobic007G002200 Sobic001G111500 Sobic001G111500 Sobic004G297400--Sobic001G111500 Sobic010G078100--Sobic008G160700 Sobic010G078100--Sobic002G303000 Sobic009G121100 Sobic009G121100 Sobic010G078100--Sobic009G121100 Sobic010G078100--Sobic006G214500 Sobic010G078100--Sobic009G027000 Sobic001G359400 Sobic001G359400 Sobic010G078100--Sobic001G359400 Sobic001G373100 Sobic001G373100 Sobic010G078100--Sobic001G373100 Sobic010G078100--Sobic006G122400 Sobic004G295800 Sobic004G295800 Sobic010G078100--Sobic004G295800 Sobic007G130600--Sobic001G194900 Sobic007G130600--Sobic005G181000 Sobic007G130600--Sobic008G160700 Sobic007G130600--Sobic006G124900 Sobic005G177800 Sobic005G177800 Sobic007G130600--Sobic005G177800 Sobic007G130600--Sobic009G027000 Sobic007G130600--Sobic010G001600 Sobic009G083900 Sobic009G083900 Sobic007G130600--Sobic009G083900 Sobic007G130600--Sobic007G078000 Sobic001G156100--Sobic009G121100 Sobic001G447500 Sobic001G447500 Sobic001G156100--Sobic001G447500 Sobic001G156100--Sobic006G214500 Sobic002G152200 Sobic002G152200 Sobic001G156100--Sobic002G152200 Sobic009G229800 Sobic009G229800 Sobic001G156100--Sobic009G229800 Sobic001G156100--Sobic008G160700 Sobic001G156100--Sobic009G027000 Sobic001G373200 Sobic001G373200 Sobic001G156100--Sobic001G373200 Sobic001G156100--Sobic004G295800 Sobic003G333600 Sobic003G333600 Sobic007G078000--Sobic003G333600 Sobic004G196700 Sobic004G196700 Sobic007G078000--Sobic004G196700 Sobic007G078000--Sobic007G185900 Sobic010G260500 Sobic010G260500 Sobic007G078000--Sobic010G260500 Sobic001G424700 Sobic001G424700 Sobic007G078000--Sobic001G424700 Sobic005G149500 Sobic005G149500 Sobic007G078000--Sobic005G149500 Sobic001G372700 Sobic001G372700 Sobic007G078000--Sobic001G372700 Sobic001G451000 Sobic001G451000 Sobic007G078000--Sobic001G451000 Sobic006G082600 Sobic006G082600 Sobic007G078000--Sobic006G082600 Sobic008G174300 Sobic008G174300 Sobic004G320000--Sobic008G174300 Sobic004G349800 Sobic004G349800 Sobic004G320000--Sobic004G349800 Sobic001G512900 Sobic001G512900 Sobic004G320000--Sobic001G512900 Sobic001G478300 Sobic001G478300 Sobic004G320000--Sobic001G478300 Sobic004G320000--Sobic010G260500 Sobic001G124300 Sobic001G124300 Sobic004G320000--Sobic001G124300 Sobic004G320000--Sobic009G027000 Sobic004G203100 Sobic004G203100 Sobic004G320000--Sobic004G203100 Sobic004G320000--Sobic003G333600
Octagon: transcription factors


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