Gene annotation
Transcriptome id Sobic.010G042900.2
Synonym ATHOL3, HOL3, Sb10g003780
Functional annotation expressed protein
UniProt A0A1W0VRE7
Pfam PF13847
Panther DB PTHR32183 PTHR32183:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G43940 : S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
RAP-DB (Rice) LOC_Os06g06040.1 : expressed protein
MaizeGDB (Corn) Zm00025a049995
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.010G042900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G093600 methyltransferase, putative, expressed -
2 Sobic.007G023700 MA3 domain containing protein, expressed -
3 Sobic.001G347600 paramyosin, putative, expressed -
4 Sobic.005G007800 F-box/LRR-repeat protein 3, putative, expressed K10268: F-box and leucine-rich repeat protein 2/20
5 Sobic.004G034400 plant-specific domain TIGR01589 family protein, putative, expressed -
6 Sobic.001G028700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.009G235900 transporter family protein, putative, expressed K08145: SLC2A8, MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 8
8 Sobic.009G117400 protein kinase domain containing protein, expressed -
9 Sobic.006G129700 amine oxidase, flavin-containing, domain containing protein, expressed K00231: PPOX, protoporphyrinogen/coproporphyrinogen III oxidase
10 Sobic.001G359400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
11 Sobic.005G012000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.6 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
12 Sobic.001G221100 ubiquitin family protein, putative, expressed K08770: ubiquitin C
13 Sobic.008G126200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@calmodulin binding protein, putative, expressed -
14 Sobic.002G300400 serine/threonine-protein kinase CTR1, putative, expressed -
15 Sobic.006G122400 uncharacterized glycosyltransferase, putative, expressed -
16 Sobic.004G143700 protein phosphatase 2C, putative, expressed -
17 Sobic.003G145900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyltransferase, putative, expressed K13510: lysophosphatidylcholine acyltransferase / lyso-PAF acetyltransferase
18 Sobic.001G039700 transcription elongation factor protein, putative, expressed K03145: transcription elongation factor S-II
19 Sobic.007G205800 chaperone protein dnaJ 10, putative, expressed -
20 Sobic.010G263800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein(PubMedID : 28640841)@UPF0183 protein, putative, expressed -


Gene co-expression network
sample Sobic010G042900 Sobic010G042900 Sobic003G093600 Sobic003G093600 Sobic010G042900--Sobic003G093600 Sobic007G023700 Sobic007G023700 Sobic010G042900--Sobic007G023700 Sobic001G347600 Sobic001G347600 Sobic010G042900--Sobic001G347600 Sobic005G007800 Sobic005G007800 Sobic010G042900--Sobic005G007800 Sobic004G034400 Sobic004G034400 Sobic010G042900--Sobic004G034400 Sobic001G028700 Sobic001G028700 Sobic010G042900--Sobic001G028700 Sobic009G235900 Sobic009G235900 Sobic010G042900--Sobic009G235900 Sobic009G117400 Sobic009G117400 Sobic010G042900--Sobic009G117400 Sobic006G129700 Sobic006G129700 Sobic010G042900--Sobic006G129700 Sobic003G093600--Sobic007G023700 Sobic009G022200 Sobic009G022200 Sobic003G093600--Sobic009G022200 Sobic004G271900 Sobic004G271900 Sobic003G093600--Sobic004G271900 Sobic007G205800 Sobic007G205800 Sobic003G093600--Sobic007G205800 Sobic004G143700 Sobic004G143700 Sobic003G093600--Sobic004G143700 Sobic009G156000 Sobic009G156000 Sobic003G093600--Sobic009G156000 Sobic009G087800 Sobic009G087800 Sobic003G093600--Sobic009G087800 Sobic003G258400 Sobic003G258400 Sobic003G093600--Sobic003G258400 Sobic001G424700 Sobic001G424700 Sobic003G093600--Sobic001G424700 Sobic007G023700--Sobic003G093600 Sobic002G039500 Sobic002G039500 Sobic007G023700--Sobic002G039500 Sobic009G180200 Sobic009G180200 Sobic007G023700--Sobic009G180200 Sobic007G023700--Sobic004G143700 Sobic002G108800 Sobic002G108800 Sobic007G023700--Sobic002G108800 Sobic002G221900 Sobic002G221900 Sobic007G023700--Sobic002G221900 Sobic007G156500 Sobic007G156500 Sobic007G023700--Sobic007G156500 Sobic007G023700--Sobic001G347600 Sobic006G184300 Sobic006G184300 Sobic007G023700--Sobic006G184300 Sobic010G263800 Sobic010G263800 Sobic001G347600--Sobic010G263800 Sobic001G347600--Sobic007G023700 Sobic001G347600--Sobic004G143700 Sobic002G077200 Sobic002G077200 Sobic001G347600--Sobic002G077200 Sobic001G347600--Sobic009G117400 Sobic007G035600 Sobic007G035600 Sobic001G347600--Sobic007G035600 Sobic007G073400 Sobic007G073400 Sobic001G347600--Sobic007G073400 Sobic001G347600--Sobic007G205800 SobicK016900 SobicK016900 Sobic001G347600--SobicK016900 Sobic005G007800--Sobic009G235900 Sobic005G007800--Sobic010G042900 Sobic002G303000 Sobic002G303000 Sobic005G007800--Sobic002G303000 Sobic003G145900 Sobic003G145900 Sobic005G007800--Sobic003G145900 Sobic001G359400 Sobic001G359400 Sobic005G007800--Sobic001G359400 Sobic009G040700 Sobic009G040700 Sobic005G007800--Sobic009G040700 Sobic005G007800--Sobic004G143700 Sobic010G078100 Sobic010G078100 Sobic005G007800--Sobic010G078100 Sobic005G007800--Sobic001G424700 Sobic004G034400--Sobic010G042900 Sobic002G010300 Sobic002G010300 Sobic004G034400--Sobic002G010300 Sobic009G054700 Sobic009G054700 Sobic004G034400--Sobic009G054700 Sobic006G209500 Sobic006G209500 Sobic004G034400--Sobic006G209500 Sobic009G178600 Sobic009G178600 Sobic004G034400--Sobic009G178600 Sobic001G085500 Sobic001G085500 Sobic004G034400--Sobic001G085500 Sobic001G478300 Sobic001G478300 Sobic004G034400--Sobic001G478300 Sobic002G132300 Sobic002G132300 Sobic004G034400--Sobic002G132300 Sobic004G320000 Sobic004G320000 Sobic004G034400--Sobic004G320000 Sobic001G111366 Sobic001G111366 Sobic001G028700--Sobic001G111366 Sobic001G111500 Sobic001G111500 Sobic001G028700--Sobic001G111500 Sobic004G297400 Sobic004G297400 Sobic001G028700--Sobic004G297400 Sobic001G028700--Sobic010G042900 Sobic001G028700--Sobic009G235900 Sobic004G006300 Sobic004G006300 Sobic001G028700--Sobic004G006300 Sobic001G028700--Sobic004G034400 Sobic001G028700--Sobic006G209500 Sobic009G027000 Sobic009G027000 Sobic001G028700--Sobic009G027000 Sobic001G194900 Sobic001G194900 Sobic009G235900--Sobic001G194900 Sobic002G188500 Sobic002G188500 Sobic009G235900--Sobic002G188500 Sobic008G160700 Sobic008G160700 Sobic009G235900--Sobic008G160700 Sobic009G235900--Sobic001G359400 Sobic009G235900--Sobic005G007800 Sobic009G235900--Sobic010G042900 Sobic003G005800 Sobic003G005800 Sobic009G235900--Sobic003G005800 Sobic009G235900--Sobic003G145900 Sobic009G235900--Sobic001G347600 Sobic009G117300 Sobic009G117300 Sobic009G117400--Sobic009G117300 Sobic009G117400--Sobic004G271900 Sobic009G117400--Sobic010G263800 Sobic009G117400--Sobic007G205800 Sobic004G256600 Sobic004G256600 Sobic009G117400--Sobic004G256600 Sobic008G034600 Sobic008G034600 Sobic009G117400--Sobic008G034600 Sobic009G117400--Sobic001G347600 Sobic004G057400 Sobic004G057400 Sobic009G117400--Sobic004G057400 Sobic009G117400--Sobic006G209500 Sobic004G061900 Sobic004G061900 Sobic006G129700--Sobic004G061900 Sobic003G315332 Sobic003G315332 Sobic006G129700--Sobic003G315332 Sobic007G094801 Sobic007G094801 Sobic006G129700--Sobic007G094801 Sobic008G117200 Sobic008G117200 Sobic006G129700--Sobic008G117200 Sobic005G162600 Sobic005G162600 Sobic006G129700--Sobic005G162600 Sobic002G177400 Sobic002G177400 Sobic006G129700--Sobic002G177400 Sobic007G011400 Sobic007G011400 Sobic006G129700--Sobic007G011400 Sobic006G129700--Sobic008G034600 Sobic009G030300 Sobic009G030300 Sobic006G129700--Sobic009G030300
Octagon: transcription factors


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