Gene annotation
Transcriptome id Sobic.008G126200.4,Sobic.008G126200.1,Sobic.008G126200.3,Sobic.008G126200.2
Synonym Sb08g017780
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
calmodulin binding protein, putative, expressed
UniProt A0A1Z5R7F4 , A0A1Z5R6B3 , A0A1B6PDR3
Pfam PF07887
Panther DB PTHR31713 PTHR31713:SF10
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006950; response to stress GO:0005516calmodulin binding


Orthologs (automatic annotation)
TAIR AT4G25800 : Calmodulin-binding protein
RAP-DB (Rice) LOC_Os12g36920.1 : calmodulin binding protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.008G126200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G184300 OsFBX148 - F-box domain containing protein, expressed -
2 Sobic.K024000 elongation factor Tu, putative, expressed K03231: elongation factor 1-alpha
3 Sobic.002G270300 zinc RING finger protein, putative, expressed K19045: E3 ubiquitin-protein ligase BIG BROTHER and related proteins
4 Sobic.007G023700 MA3 domain containing protein, expressed -
5 Sobic.008G009500 pentatricopeptide, putative, expressed -
6 Sobic.001G347600 paramyosin, putative, expressed -
7 Sobic.005G012000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.6 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
8 Sobic.003G093600 methyltransferase, putative, expressed -
9 Sobic.002G108800 auxin efflux carrier component, putative, expressed -
10 Sobic.009G117400 protein kinase domain containing protein, expressed -
11 Sobic.009G113600 - -
12 Sobic.002G221700 microtubule associated protein, putative, expressed K16732: protein regulator of cytokinesis 1
13 Sobic.009G183500 expressed protein -
14 Sobic.010G146200 homeobox associated leucine zipper, putative, expressed -
15 Sobic.010G042900 expressed protein -
16 Sobic.003G034500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant
17 Sobic.002G039500 expressed protein -
18 Sobic.010G263800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein(PubMedID : 28640841)@UPF0183 protein, putative, expressed -
19 Sobic.004G143700 protein phosphatase 2C, putative, expressed -
20 Sobic.007G059300 - -


Gene co-expression network
sample Sobic008G126200 Sobic008G126200 Sobic006G184300 Sobic006G184300 Sobic008G126200--Sobic006G184300 SobicK024000 SobicK024000 Sobic008G126200--SobicK024000 Sobic002G270300 Sobic002G270300 Sobic008G126200--Sobic002G270300 Sobic007G023700 Sobic007G023700 Sobic008G126200--Sobic007G023700 Sobic008G009500 Sobic008G009500 Sobic008G126200--Sobic008G009500 Sobic001G347600 Sobic001G347600 Sobic008G126200--Sobic001G347600 Sobic005G012000 Sobic005G012000 Sobic008G126200--Sobic005G012000 Sobic003G093600 Sobic003G093600 Sobic008G126200--Sobic003G093600 Sobic002G108800 Sobic002G108800 Sobic008G126200--Sobic002G108800 Sobic006G184300--Sobic002G108800 Sobic006G184300--Sobic007G023700 Sobic007G156500 Sobic007G156500 Sobic006G184300--Sobic007G156500 Sobic002G039500 Sobic002G039500 Sobic006G184300--Sobic002G039500 Sobic006G184300--Sobic008G126200 Sobic004G221900 Sobic004G221900 Sobic006G184300--Sobic004G221900 Sobic006G184300--Sobic005G012000 Sobic009G257300 Sobic009G257300 Sobic006G184300--Sobic009G257300 Sobic006G184300--Sobic003G093600 SobicK024000--Sobic008G009500 Sobic009G113600 Sobic009G113600 SobicK024000--Sobic009G113600 Sobic002G062300 Sobic002G062300 SobicK024000--Sobic002G062300 Sobic007G059300 Sobic007G059300 SobicK024000--Sobic007G059300 Sobic009G209800 Sobic009G209800 SobicK024000--Sobic009G209800 Sobic003G031750 Sobic003G031750 SobicK024000--Sobic003G031750 Sobic001G253100 Sobic001G253100 SobicK024000--Sobic001G253100 Sobic008G079100 Sobic008G079100 SobicK024000--Sobic008G079100 Sobic002G221200 Sobic002G221200 SobicK024000--Sobic002G221200 Sobic002G270300--Sobic008G126200 Sobic009G117400 Sobic009G117400 Sobic002G270300--Sobic009G117400 Sobic009G117300 Sobic009G117300 Sobic002G270300--Sobic009G117300 Sobic004G271900 Sobic004G271900 Sobic002G270300--Sobic004G271900 Sobic009G225200 Sobic009G225200 Sobic002G270300--Sobic009G225200 Sobic006G209500 Sobic006G209500 Sobic002G270300--Sobic006G209500 Sobic008G136000 Sobic008G136000 Sobic002G270300--Sobic008G136000 Sobic006G088100 Sobic006G088100 Sobic002G270300--Sobic006G088100 Sobic001G428400 Sobic001G428400 Sobic002G270300--Sobic001G428400 Sobic007G023700--Sobic003G093600 Sobic007G023700--Sobic002G039500 Sobic009G180200 Sobic009G180200 Sobic007G023700--Sobic009G180200 Sobic004G143700 Sobic004G143700 Sobic007G023700--Sobic004G143700 Sobic007G023700--Sobic002G108800 Sobic002G221900 Sobic002G221900 Sobic007G023700--Sobic002G221900 Sobic007G023700--Sobic007G156500 Sobic007G023700--Sobic001G347600 Sobic007G023700--Sobic006G184300 Sobic008G009500--SobicK024000 Sobic004G076732 Sobic004G076732 Sobic008G009500--Sobic004G076732 Sobic008G009500--Sobic002G062300 Sobic008G009500--Sobic009G113600 Sobic008G009500--Sobic001G253100 Sobic007G073400 Sobic007G073400 Sobic008G009500--Sobic007G073400 Sobic008G009500--Sobic009G209800 Sobic008G031350 Sobic008G031350 Sobic008G009500--Sobic008G031350 Sobic005G221425 Sobic005G221425 Sobic008G009500--Sobic005G221425 Sobic010G263800 Sobic010G263800 Sobic001G347600--Sobic010G263800 Sobic001G347600--Sobic007G023700 Sobic001G347600--Sobic004G143700 Sobic002G077200 Sobic002G077200 Sobic001G347600--Sobic002G077200 Sobic001G347600--Sobic009G117400 Sobic007G035600 Sobic007G035600 Sobic001G347600--Sobic007G035600 Sobic001G347600--Sobic007G073400 Sobic007G205800 Sobic007G205800 Sobic001G347600--Sobic007G205800 SobicK016900 SobicK016900 Sobic001G347600--SobicK016900 Sobic003G044900 Sobic003G044900 Sobic005G012000--Sobic003G044900 Sobic005G012000--Sobic002G039500 Sobic005G012000--Sobic006G184300 Sobic005G012000--Sobic007G023700 Sobic005G012000--Sobic003G093600 Sobic005G012000--Sobic008G126200 Sobic006G194150 Sobic006G194150 Sobic005G012000--Sobic006G194150 Sobic002G221700 Sobic002G221700 Sobic005G012000--Sobic002G221700 Sobic005G012000--Sobic007G073400 Sobic003G093600--Sobic007G023700 Sobic009G022200 Sobic009G022200 Sobic003G093600--Sobic009G022200 Sobic003G093600--Sobic004G271900 Sobic003G093600--Sobic007G205800 Sobic003G093600--Sobic004G143700 Sobic009G156000 Sobic009G156000 Sobic003G093600--Sobic009G156000 Sobic009G087800 Sobic009G087800 Sobic003G093600--Sobic009G087800 Sobic003G258400 Sobic003G258400 Sobic003G093600--Sobic003G258400 Sobic001G424700 Sobic001G424700 Sobic003G093600--Sobic001G424700 Sobic002G108800--Sobic007G156500 Sobic002G007250 Sobic002G007250 Sobic002G108800--Sobic002G007250 Sobic001G345333 Sobic001G345333 Sobic002G108800--Sobic001G345333 Sobic002G253500 Sobic002G253500 Sobic002G108800--Sobic002G253500 Sobic010G248200 Sobic010G248200 Sobic002G108800--Sobic010G248200 Sobic004G212800 Sobic004G212800 Sobic002G108800--Sobic004G212800 Sobic002G108800--Sobic002G039500 Sobic002G108800--Sobic007G023700 Sobic002G108800--Sobic007G073400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.