Gene annotation
Transcriptome id Sobic.006G184300.1
Synonym Sb06g025860, PP2-A13, AtPP2-A13
Functional annotation OsFBX148 - F-box domain containing protein, expressed
UniProt C5YE44
Pfam PF14299
Panther DB PTHR31960 PTHR31960:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G61060 : phloem protein 2-A13
RAP-DB (Rice) LOC_Os04g48270.2 : OsFBX148 - F-box domain containing protein, expressed
MaizeGDB (Corn) Zm00025a056762 , Zm00025a010160 , Zm00025a032309
Brachypodium -
Barley HORVU2Hr1G094960.10 , HORVU2Hr1G094960.11 , HORVU2Hr1G094960.5 , HORVU2Hr1G094960.6 , HORVU2Hr1G094960.7 , HORVU2Hr1G094960.4 , HORVU2Hr1G094960.2 , HORVU2Hr1G094960.3 , HORVU2Hr1G094960.1 , HORVU2Hr1G094960.8 , HORVU2Hr1G094960.9
Wheat TraesCS2A02G400100 , TraesCS2D02G397700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G108800 auxin efflux carrier component, putative, expressed -
2 Sobic.007G023700 MA3 domain containing protein, expressed -
3 Sobic.007G156500 alpha-amylase precursor, putative, expressed K01176: AMY, amyA, alpha-amylase
4 Sobic.002G039500 expressed protein -
5 Sobic.008G126200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@calmodulin binding protein, putative, expressed -
6 Sobic.004G221900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF584 domain containing protein, putative, expressed -
7 Sobic.005G012000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Interacting factor of CBLs(PubMedID : 19860013)@CAMK_KIN1/SNF1/Nim1_like.6 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
8 Sobic.009G257300 ELF3 protein, putative, expressed K12125: protein EARLY FLOWERING 3
9 Sobic.003G093600 methyltransferase, putative, expressed -
10 Sobic.004G143700 protein phosphatase 2C, putative, expressed -
11 Sobic.009G180200 SNF1-related protein kinase regulatory subunit beta-1, putative, expressed K07199: 5'-AMP-activated protein kinase, regulatory beta subunit
12 Sobic.K024000 elongation factor Tu, putative, expressed K03231: elongation factor 1-alpha
13 Sobic.003G044900 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by IAA treatment"(PubMedID : 20499123)@OsIAA1 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
14 Sobic.002G221700 microtubule associated protein, putative, expressed K16732: protein regulator of cytokinesis 1
15 Sobic.001G347600 paramyosin, putative, expressed -
16 Sobic.001G345333 - -
17 Sobic.010G050600 - -
18 Sobic.010G248200 KID-containing protein, putative, expressed -
19 Sobic.002G283300 protein kinase family protein, putative, expressed -
20 Sobic.007G150200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MTD1, putative, expressed -


Gene co-expression network
sample Sobic006G184300 Sobic006G184300 Sobic002G108800 Sobic002G108800 Sobic006G184300--Sobic002G108800 Sobic007G023700 Sobic007G023700 Sobic006G184300--Sobic007G023700 Sobic007G156500 Sobic007G156500 Sobic006G184300--Sobic007G156500 Sobic002G039500 Sobic002G039500 Sobic006G184300--Sobic002G039500 Sobic008G126200 Sobic008G126200 Sobic006G184300--Sobic008G126200 Sobic004G221900 Sobic004G221900 Sobic006G184300--Sobic004G221900 Sobic005G012000 Sobic005G012000 Sobic006G184300--Sobic005G012000 Sobic009G257300 Sobic009G257300 Sobic006G184300--Sobic009G257300 Sobic003G093600 Sobic003G093600 Sobic006G184300--Sobic003G093600 Sobic002G108800--Sobic007G156500 Sobic002G007250 Sobic002G007250 Sobic002G108800--Sobic002G007250 Sobic001G345333 Sobic001G345333 Sobic002G108800--Sobic001G345333 Sobic002G253500 Sobic002G253500 Sobic002G108800--Sobic002G253500 Sobic010G248200 Sobic010G248200 Sobic002G108800--Sobic010G248200 Sobic004G212800 Sobic004G212800 Sobic002G108800--Sobic004G212800 Sobic002G108800--Sobic002G039500 Sobic002G108800--Sobic007G023700 Sobic007G073400 Sobic007G073400 Sobic002G108800--Sobic007G073400 Sobic007G023700--Sobic003G093600 Sobic007G023700--Sobic002G039500 Sobic009G180200 Sobic009G180200 Sobic007G023700--Sobic009G180200 Sobic004G143700 Sobic004G143700 Sobic007G023700--Sobic004G143700 Sobic007G023700--Sobic002G108800 Sobic002G221900 Sobic002G221900 Sobic007G023700--Sobic002G221900 Sobic007G023700--Sobic007G156500 Sobic001G347600 Sobic001G347600 Sobic007G023700--Sobic001G347600 Sobic007G023700--Sobic006G184300 Sobic007G156500--Sobic002G108800 Sobic007G156500--Sobic002G253500 Sobic009G231300 Sobic009G231300 Sobic007G156500--Sobic009G231300 Sobic007G156500--Sobic002G007250 Sobic007G156500--Sobic010G248200 Sobic007G156500--Sobic002G039500 Sobic007G156500--Sobic001G345333 Sobic007G156500--Sobic007G023700 Sobic008G161401 Sobic008G161401 Sobic007G156500--Sobic008G161401 Sobic002G039500--Sobic002G253500 Sobic002G039500--Sobic007G023700 Sobic002G039500--Sobic002G108800 Sobic002G039500--Sobic007G156500 Sobic002G039500--Sobic002G221900 Sobic002G039500--Sobic004G212800 Sobic002G039500--Sobic009G231300 Sobic003G044900 Sobic003G044900 Sobic002G039500--Sobic003G044900 Sobic002G039500--Sobic007G073400 Sobic008G126200--Sobic006G184300 SobicK024000 SobicK024000 Sobic008G126200--SobicK024000 Sobic002G270300 Sobic002G270300 Sobic008G126200--Sobic002G270300 Sobic008G126200--Sobic007G023700 Sobic008G009500 Sobic008G009500 Sobic008G126200--Sobic008G009500 Sobic008G126200--Sobic001G347600 Sobic008G126200--Sobic005G012000 Sobic008G126200--Sobic003G093600 Sobic008G126200--Sobic002G108800 Sobic004G221900--Sobic007G023700 Sobic001G363100 Sobic001G363100 Sobic004G221900--Sobic001G363100 Sobic004G221900--Sobic009G180200 Sobic004G221900--Sobic007G156500 Sobic003G296600 Sobic003G296600 Sobic004G221900--Sobic003G296600 Sobic004G221900--Sobic002G108800 Sobic004G221900--Sobic006G184300 Sobic001G032100 Sobic001G032100 Sobic004G221900--Sobic001G032100 Sobic004G221900--Sobic002G039500 Sobic005G012000--Sobic003G044900 Sobic005G012000--Sobic002G039500 Sobic005G012000--Sobic006G184300 Sobic005G012000--Sobic007G023700 Sobic005G012000--Sobic003G093600 Sobic005G012000--Sobic008G126200 Sobic006G194150 Sobic006G194150 Sobic005G012000--Sobic006G194150 Sobic002G221700 Sobic002G221700 Sobic005G012000--Sobic002G221700 Sobic005G012000--Sobic007G073400 Sobic003G015000 Sobic003G015000 Sobic009G257300--Sobic003G015000 Sobic002G039600 Sobic002G039600 Sobic009G257300--Sobic002G039600 Sobic009G257300--Sobic007G073400 Sobic009G228201 Sobic009G228201 Sobic009G257300--Sobic009G228201 Sobic009G257300--Sobic002G039500 Sobic008G079100 Sobic008G079100 Sobic009G257300--Sobic008G079100 Sobic009G257300--Sobic007G023700 Sobic009G257300--Sobic004G143700 Sobic009G257300--Sobic009G180200 Sobic003G093600--Sobic007G023700 Sobic009G022200 Sobic009G022200 Sobic003G093600--Sobic009G022200 Sobic004G271900 Sobic004G271900 Sobic003G093600--Sobic004G271900 Sobic007G205800 Sobic007G205800 Sobic003G093600--Sobic007G205800 Sobic003G093600--Sobic004G143700 Sobic009G156000 Sobic009G156000 Sobic003G093600--Sobic009G156000 Sobic009G087800 Sobic009G087800 Sobic003G093600--Sobic009G087800 Sobic003G258400 Sobic003G258400 Sobic003G093600--Sobic003G258400 Sobic001G424700 Sobic001G424700 Sobic003G093600--Sobic001G424700
Octagon: transcription factors


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