Gene annotation
Transcriptome id Sobic.009G257300.2,Sobic.009G257300.1,Sobic.009G257300.3
Synonym ELF3, PYK20, Sb09g030700
Functional annotation ELF3 protein, putative, expressed
UniProt C5YX17
Pfam -
Panther DB PTHR34281 PTHR34281:SF2
NCBI CDD -
KEGG Orthology K12125; protein EARLY FLOWERING 3
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G25930 : hydroxyproline-rich glycoprotein family protein
RAP-DB (Rice) LOC_Os01g38530.1 : ELF3 protein, putative, expressed
MaizeGDB (Corn) Zm00025a028422 , Zm00025a044738
Brachypodium KQK04562
Barley HORVU1Hr1G094980.3 , HORVU1Hr1G094980.2 , HORVU1Hr1G094980.1 , HORVU1Hr1G094980.7 , HORVU1Hr1G094980.6 , HORVU1Hr1G094980.5 , HORVU1Hr1G094980.4
Wheat TraesCS1A02G443200 , TraesCS1A02G443200 , TraesCS1B02G477400 , TraesCS1D02G451200 , TraesCS1D02G451200
Populus -


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cDNA sequences
Sobic.009G257300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G015000 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by BR treatment"(PubMedID : 20499123)@OsGH3.3 - Probable indole-3-acetic acid-amido synthetase, expressed K14487: auxin responsive GH3 gene family
2 Sobic.002G039600 - -
3 Sobic.007G073400 SHR5-receptor-like kinase, putative, expressed -
4 Sobic.009G228201 - -
5 Sobic.002G039500 expressed protein -
6 Sobic.008G079100 - -
7 Sobic.007G023700 MA3 domain containing protein, expressed -
8 Sobic.004G143700 protein phosphatase 2C, putative, expressed -
9 Sobic.009G180200 SNF1-related protein kinase regulatory subunit beta-1, putative, expressed K07199: 5'-AMP-activated protein kinase, regulatory beta subunit
10 Sobic.004G212800 - -
11 Sobic.009G109450 - -
12 Sobic.006G184300 OsFBX148 - F-box domain containing protein, expressed -
13 Sobic.003G128600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNAJ heat shock N-terminal domain-containing protein, putative, expressed K09527: DnaJ homolog subfamily C member 7
14 Sobic.002G297800 growth regulating factor protein, putative, expressed -
15 Sobic.010G019100 expressed protein -
16 Sobic.010G050600 - -
17 Sobic.002G108800 auxin efflux carrier component, putative, expressed -
18 Sobic.002G253500 FAD dependent oxidoreductase domain containing protein, expressed K00306: sarcosine oxidase / L-pipecolate oxidase
19 Sobic.009G231300 drought induced 19 protein, putative, expressed -
20 Sobic.K024000 elongation factor Tu, putative, expressed K03231: elongation factor 1-alpha


Gene co-expression network
sample Sobic009G257300 Sobic009G257300 Sobic003G015000 Sobic003G015000 Sobic009G257300--Sobic003G015000 Sobic002G039600 Sobic002G039600 Sobic009G257300--Sobic002G039600 Sobic007G073400 Sobic007G073400 Sobic009G257300--Sobic007G073400 Sobic009G228201 Sobic009G228201 Sobic009G257300--Sobic009G228201 Sobic002G039500 Sobic002G039500 Sobic009G257300--Sobic002G039500 Sobic008G079100 Sobic008G079100 Sobic009G257300--Sobic008G079100 Sobic007G023700 Sobic007G023700 Sobic009G257300--Sobic007G023700 Sobic004G143700 Sobic004G143700 Sobic009G257300--Sobic004G143700 Sobic009G180200 Sobic009G180200 Sobic009G257300--Sobic009G180200 Sobic003G015000--Sobic009G228201 Sobic003G015000--Sobic009G257300 Sobic003G044900 Sobic003G044900 Sobic003G015000--Sobic003G044900 Sobic003G015000--Sobic008G079100 Sobic004G212800 Sobic004G212800 Sobic003G015000--Sobic004G212800 Sobic001G024200 Sobic001G024200 Sobic003G015000--Sobic001G024200 Sobic003G128600 Sobic003G128600 Sobic003G015000--Sobic003G128600 Sobic009G059600 Sobic009G059600 Sobic003G015000--Sobic009G059600 Sobic003G015000--Sobic007G073400 Sobic002G039600--Sobic009G257300 Sobic002G221700 Sobic002G221700 Sobic002G039600--Sobic002G221700 Sobic001G345333 Sobic001G345333 Sobic002G039600--Sobic001G345333 Sobic002G108800 Sobic002G108800 Sobic002G039600--Sobic002G108800 Sobic008G157950 Sobic008G157950 Sobic002G039600--Sobic008G157950 Sobic002G007250 Sobic002G007250 Sobic002G039600--Sobic002G007250 Sobic002G283300 Sobic002G283300 Sobic002G039600--Sobic002G283300 Sobic003G204000 Sobic003G204000 Sobic002G039600--Sobic003G204000 Sobic002G039600--Sobic004G212800 Sobic007G073400--Sobic004G212800 Sobic004G164600 Sobic004G164600 Sobic007G073400--Sobic004G164600 Sobic004G076732 Sobic004G076732 Sobic007G073400--Sobic004G076732 Sobic008G009500 Sobic008G009500 Sobic007G073400--Sobic008G009500 Sobic009G113600 Sobic009G113600 Sobic007G073400--Sobic009G113600 Sobic008G031350 Sobic008G031350 Sobic007G073400--Sobic008G031350 Sobic008G042250 Sobic008G042250 Sobic007G073400--Sobic008G042250 Sobic005G110430 Sobic005G110430 Sobic007G073400--Sobic005G110430 Sobic007G073400--Sobic004G143700 Sobic009G228201--Sobic003G015000 Sobic010G278500 Sobic010G278500 Sobic009G228201--Sobic010G278500 Sobic009G228201--Sobic009G257300 Sobic009G228201--Sobic008G079100 Sobic009G228201--Sobic004G212800 Sobic008G167300 Sobic008G167300 Sobic009G228201--Sobic008G167300 Sobic010G248200 Sobic010G248200 Sobic009G228201--Sobic010G248200 Sobic009G228201--Sobic001G345333 Sobic006G046000 Sobic006G046000 Sobic009G228201--Sobic006G046000 Sobic002G253500 Sobic002G253500 Sobic002G039500--Sobic002G253500 Sobic002G039500--Sobic007G023700 Sobic002G039500--Sobic002G108800 Sobic007G156500 Sobic007G156500 Sobic002G039500--Sobic007G156500 Sobic002G221900 Sobic002G221900 Sobic002G039500--Sobic002G221900 Sobic002G039500--Sobic004G212800 Sobic009G231300 Sobic009G231300 Sobic002G039500--Sobic009G231300 Sobic002G039500--Sobic003G044900 Sobic002G039500--Sobic007G073400 Sobic008G079100--Sobic008G042250 Sobic009G209800 Sobic009G209800 Sobic008G079100--Sobic009G209800 SobicK024000 SobicK024000 Sobic008G079100--SobicK024000 Sobic003G031750 Sobic003G031750 Sobic008G079100--Sobic003G031750 Sobic001G253100 Sobic001G253100 Sobic008G079100--Sobic001G253100 Sobic008G079100--Sobic005G110430 Sobic008G049701 Sobic008G049701 Sobic008G079100--Sobic008G049701 Sobic002G062300 Sobic002G062300 Sobic008G079100--Sobic002G062300 Sobic008G079100--Sobic008G009500 Sobic003G093600 Sobic003G093600 Sobic007G023700--Sobic003G093600 Sobic007G023700--Sobic002G039500 Sobic007G023700--Sobic009G180200 Sobic007G023700--Sobic004G143700 Sobic007G023700--Sobic002G108800 Sobic007G023700--Sobic002G221900 Sobic007G023700--Sobic007G156500 Sobic001G347600 Sobic001G347600 Sobic007G023700--Sobic001G347600 Sobic006G184300 Sobic006G184300 Sobic007G023700--Sobic006G184300 Sobic004G143700--Sobic007G073400 Sobic004G143700--Sobic007G023700 Sobic004G143700--Sobic004G212800 Sobic004G143700--Sobic002G283300 Sobic004G143700--Sobic010G248200 Sobic004G143700--Sobic001G024200 Sobic004G143700--Sobic003G093600 Sobic001G439500 Sobic001G439500 Sobic004G143700--Sobic001G439500 Sobic001G543900 Sobic001G543900 Sobic004G143700--Sobic001G543900 Sobic004G199600 Sobic004G199600 Sobic009G180200--Sobic004G199600 Sobic001G363100 Sobic001G363100 Sobic009G180200--Sobic001G363100 Sobic009G109450 Sobic009G109450 Sobic009G180200--Sobic009G109450 Sobic009G078500 Sobic009G078500 Sobic009G180200--Sobic009G078500 Sobic009G180200--Sobic007G023700 Sobic009G180200--Sobic009G231300 Sobic005G130100 Sobic005G130100 Sobic009G180200--Sobic005G130100 Sobic003G258400 Sobic003G258400 Sobic009G180200--Sobic003G258400 Sobic005G121800 Sobic005G121800 Sobic009G180200--Sobic005G121800
Octagon: transcription factors


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