Gene annotation
Transcriptome id Sobic.002G297800.1
Synonym Sb02g032860, GRF2, AtGRF2
Functional annotation growth regulating factor protein, putative, expressed
UniProt C5X8F1
Pfam PF08880 PF08879
Panther DB PTHR31602 PTHR31602:SF14
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus GO:0005524ATP binding GO:0006351transcription, DNA-templated


Orthologs (automatic annotation)
TAIR AT4G37740 : growth-regulating factor 2
RAP-DB (Rice) LOC_Os07g28430.1 : growth regulating factor protein, putative, expressed
MaizeGDB (Corn) Zm00025a014592 , Zm00025a047862
Brachypodium -
Barley HORVU2Hr1G054270.1 , HORVU2Hr1G054270.2 , HORVU2Hr1G054270.3 , HORVU2Hr1G054270.6 , HORVU2Hr1G054270.7 , HORVU2Hr1G054270.4 , HORVU2Hr1G054270.5
Wheat TraesCS2A02G238700 , TraesCS2A02G238700 , TraesCS2B02G256600 , TraesCS2B02G256600 , TraesCS2D02G246600 , TraesCS2D02G246600
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G297800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G049000 frigida, putative, expressed -
2 Sobic.003G204000 expressed protein -
3 Sobic.002G061400 OsFBX237 - F-box domain containing protein, expressed -
4 Sobic.008G068800 cytokinin inducible protein, putative, expressed -
5 Sobic.009G231300 drought induced 19 protein, putative, expressed -
6 Sobic.009G257300 ELF3 protein, putative, expressed K12125: protein EARLY FLOWERING 3
7 Sobic.004G212800 - -
8 Sobic.002G313300 bromodomain domain containing protein, expressed -
9 Sobic.009G059600 KIP1, putative, expressed -
10 Sobic.007G073400 SHR5-receptor-like kinase, putative, expressed -
11 Sobic.004G143700 protein phosphatase 2C, putative, expressed -
12 Sobic.008G034600 protein kinase PKN/PRK1, effector, putative, expressed -
13 Sobic.004G169501 - -
14 Sobic.002G253500 FAD dependent oxidoreductase domain containing protein, expressed K00306: sarcosine oxidase / L-pipecolate oxidase
15 Sobic.008G117200 RING finger and CHY zinc finger domain-containing protein 1, putative, expressed K10144: RCHY1, RING finger and CHY zinc finger domain-containing protein 1
16 Sobic.001G422366 - -
17 Sobic.003G346000 IQ calmodulin-binding motif domain containing protein, expressed -
18 Sobic.001G024200 lipase class 3 family protein, putative, expressed -
19 Sobic.008G116500 plus-3 domain containing protein, expressed K15178: RNA polymerase-associated protein RTF1
20 Sobic.001G543900 H(+)-ATPase 7(PubMedID : 26320239)@E1-E2 ATPase domain containing protein, expressed K01535: PMA1, H+-transporting ATPase


Gene co-expression network
sample Sobic002G297800 Sobic002G297800 Sobic002G049000 Sobic002G049000 Sobic002G297800--Sobic002G049000 Sobic003G204000 Sobic003G204000 Sobic002G297800--Sobic003G204000 Sobic002G061400 Sobic002G061400 Sobic002G297800--Sobic002G061400 Sobic008G068800 Sobic008G068800 Sobic002G297800--Sobic008G068800 Sobic009G231300 Sobic009G231300 Sobic002G297800--Sobic009G231300 Sobic009G257300 Sobic009G257300 Sobic002G297800--Sobic009G257300 Sobic004G212800 Sobic004G212800 Sobic002G297800--Sobic004G212800 Sobic002G313300 Sobic002G313300 Sobic002G297800--Sobic002G313300 Sobic009G059600 Sobic009G059600 Sobic002G297800--Sobic009G059600 Sobic003G346000 Sobic003G346000 Sobic002G049000--Sobic003G346000 Sobic002G049000--Sobic002G297800 Sobic002G090400 Sobic002G090400 Sobic002G049000--Sobic002G090400 Sobic002G049000--Sobic008G068800 Sobic007G011400 Sobic007G011400 Sobic002G049000--Sobic007G011400 Sobic002G049000--Sobic002G061400 Sobic001G094000 Sobic001G094000 Sobic002G049000--Sobic001G094000 Sobic008G034600 Sobic008G034600 Sobic002G049000--Sobic008G034600 Sobic001G394400 Sobic001G394400 Sobic002G049000--Sobic001G394400 Sobic001G024200 Sobic001G024200 Sobic003G204000--Sobic001G024200 Sobic003G204000--Sobic008G068800 Sobic003G204000--Sobic004G212800 Sobic008G116500 Sobic008G116500 Sobic003G204000--Sobic008G116500 Sobic004G169501 Sobic004G169501 Sobic003G204000--Sobic004G169501 Sobic001G543900 Sobic001G543900 Sobic003G204000--Sobic001G543900 Sobic004G112500 Sobic004G112500 Sobic003G204000--Sobic004G112500 Sobic003G204000--Sobic002G297800 Sobic003G315332 Sobic003G315332 Sobic003G204000--Sobic003G315332 Sobic008G129700 Sobic008G129700 Sobic002G061400--Sobic008G129700 Sobic003G336800 Sobic003G336800 Sobic002G061400--Sobic003G336800 Sobic002G421700 Sobic002G421700 Sobic002G061400--Sobic002G421700 Sobic010G199800 Sobic010G199800 Sobic002G061400--Sobic010G199800 Sobic002G061400--Sobic008G034600 Sobic002G061400--Sobic008G116500 Sobic002G061400--Sobic002G297800 Sobic002G061400--Sobic002G049000 Sobic008G117200 Sobic008G117200 Sobic002G061400--Sobic008G117200 Sobic007G116400 Sobic007G116400 Sobic008G068800--Sobic007G116400 Sobic007G142050 Sobic007G142050 Sobic008G068800--Sobic007G142050 Sobic008G068800--Sobic003G204000 Sobic008G068800--Sobic004G169501 Sobic008G068800--Sobic009G059600 Sobic008G068800--Sobic003G315332 Sobic004G286900 Sobic004G286900 Sobic008G068800--Sobic004G286900 Sobic003G424100 Sobic003G424100 Sobic008G068800--Sobic003G424100 Sobic008G068800--Sobic001G024200 Sobic005G130100 Sobic005G130100 Sobic009G231300--Sobic005G130100 Sobic009G180200 Sobic009G180200 Sobic009G231300--Sobic009G180200 Sobic009G109450 Sobic009G109450 Sobic009G231300--Sobic009G109450 Sobic009G078500 Sobic009G078500 Sobic009G231300--Sobic009G078500 Sobic007G156500 Sobic007G156500 Sobic009G231300--Sobic007G156500 Sobic005G003200 Sobic005G003200 Sobic009G231300--Sobic005G003200 Sobic003G258400 Sobic003G258400 Sobic009G231300--Sobic003G258400 Sobic004G199600 Sobic004G199600 Sobic009G231300--Sobic004G199600 Sobic010G050600 Sobic010G050600 Sobic009G231300--Sobic010G050600 Sobic003G015000 Sobic003G015000 Sobic009G257300--Sobic003G015000 Sobic002G039600 Sobic002G039600 Sobic009G257300--Sobic002G039600 Sobic007G073400 Sobic007G073400 Sobic009G257300--Sobic007G073400 Sobic009G228201 Sobic009G228201 Sobic009G257300--Sobic009G228201 Sobic002G039500 Sobic002G039500 Sobic009G257300--Sobic002G039500 Sobic008G079100 Sobic008G079100 Sobic009G257300--Sobic008G079100 Sobic007G023700 Sobic007G023700 Sobic009G257300--Sobic007G023700 Sobic004G143700 Sobic004G143700 Sobic009G257300--Sobic004G143700 Sobic009G257300--Sobic009G180200 Sobic004G212800--Sobic007G073400 Sobic004G164600 Sobic004G164600 Sobic004G212800--Sobic004G164600 Sobic004G212800--Sobic001G024200 Sobic001G345333 Sobic001G345333 Sobic004G212800--Sobic001G345333 Sobic002G007250 Sobic002G007250 Sobic004G212800--Sobic002G007250 Sobic010G248200 Sobic010G248200 Sobic004G212800--Sobic010G248200 Sobic004G076732 Sobic004G076732 Sobic004G212800--Sobic004G076732 Sobic008G161401 Sobic008G161401 Sobic004G212800--Sobic008G161401 Sobic004G212800--Sobic004G112500 Sobic001G477800 Sobic001G477800 Sobic002G313300--Sobic001G477800 Sobic002G077200 Sobic002G077200 Sobic002G313300--Sobic002G077200 Sobic002G313300--Sobic007G011400 Sobic010G263800 Sobic010G263800 Sobic002G313300--Sobic010G263800 Sobic002G313300--Sobic001G543900 Sobic006G080300 Sobic006G080300 Sobic002G313300--Sobic006G080300 Sobic006G009400 Sobic006G009400 Sobic002G313300--Sobic006G009400 Sobic007G185900 Sobic007G185900 Sobic002G313300--Sobic007G185900 Sobic004G031700 Sobic004G031700 Sobic002G313300--Sobic004G031700 Sobic009G059600--Sobic004G164600 Sobic007G099500 Sobic007G099500 Sobic009G059600--Sobic007G099500 Sobic009G059600--Sobic004G212800 Sobic009G059600--Sobic007G073400 Sobic009G059600--Sobic008G068800 Sobic003G128600 Sobic003G128600 Sobic009G059600--Sobic003G128600 Sobic009G059600--Sobic003G424100 Sobic009G059600--Sobic007G142050 Sobic009G059600--Sobic004G076732
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.