Gene annotation
Transcriptome id Sobic.008G117200.1
Synonym Sb08g017080
Functional annotation RING finger and CHY zinc finger domain-containing protein 1, putative, expressed
UniProt C5YPC8
Pfam PF13639 PF05495 PF14599
Panther DB PTHR21319 PTHR21319:SF5
NCBI CDD KOG1940; Zn-finger protein
KEGG Orthology K10144; RCHY1, RING finger and CHY zinc finger domain-containing protein 1
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding GO:0016567protein ubiquitination


Orthologs (automatic annotation)
TAIR AT5G18650 : CHY-type/CTCHY-type/RING-type Zinc finger protein
RAP-DB (Rice) LOC_Os12g35320.1 : RING finger and CHY zinc finger domain-containing protein 1, putative, expressed
MaizeGDB (Corn) Zm00025a054360
Brachypodium PNT62594 , PNT62593 , KQJ86466
Barley HORVU5Hr1G025720.9 , HORVU5Hr1G025720.7 , HORVU5Hr1G025720.5 , HORVU5Hr1G025720.3 , HORVU5Hr1G025720.2 , HORVU5Hr1G025720.8 , HORVU5Hr1G025720.4 , HORVU5Hr1G025720.11 , HORVU5Hr1G025720.10 , HORVU5Hr1G025720.1
Wheat TraesCS5B02G101200 , TraesCS5B02G101200 , TraesCS5A02G095000 , TraesCS5A02G095000 , TraesCS5D02G107600
Populus -


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cDNA sequences
Sobic.008G117200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G263800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein(PubMedID : 28640841)@UPF0183 protein, putative, expressed -
2 Sobic.008G034600 protein kinase PKN/PRK1, effector, putative, expressed -
3 Sobic.001G094000 expressed protein -
4 Sobic.004G088400 GTPase-activating protein, putative, expressed -
5 Sobic.002G177400 expressed protein -
6 Sobic.002G421700 OsFBX368 - F-box domain containing protein, expressed -
7 Sobic.007G116400 - -
8 Sobic.007G011400 armadillo/beta-catenin repeat family protein, putative, expressed -
9 Sobic.001G477800 expressed protein -
10 Sobic.002G313300 bromodomain domain containing protein, expressed -
11 Sobic.008G129700 PAPA-1-like conserved region family protein, expressed K11666: INO80B, ZNHIT4, INO80 complex subunit B
12 Sobic.004G031700 expressed protein -
13 Sobic.001G454301 - -
14 Sobic.004G169501 - -
15 Sobic.002G157300 Ser/Thr protein phosphatase family protein, putative, expressed K15423: serine/threonine-protein phosphatase 4 catalytic subunit
16 Sobic.006G013500 hydrolase/ zinc ion binding protein, putative, expressed K15442: TAD3, tRNA-specific adenosine deaminase 3
17 Sobic.004G197900 - -
18 Sobic.004G061900 Sad1 / UNC-like C-terminal domain containing protein, putative, expressed K19347: SUN domain-containing protein 1/2
19 Sobic.003G239900 ketol-acid reductoisomerase, chloroplast precursor, putative, expressed K00053: ketol-acid reductoisomerase
20 Sobic.005G015900 dnaJ domain containing protein, expressed -


Gene co-expression network
sample Sobic008G117200 Sobic008G117200 Sobic010G263800 Sobic010G263800 Sobic008G117200--Sobic010G263800 Sobic008G034600 Sobic008G034600 Sobic008G117200--Sobic008G034600 Sobic001G094000 Sobic001G094000 Sobic008G117200--Sobic001G094000 Sobic004G088400 Sobic004G088400 Sobic008G117200--Sobic004G088400 Sobic002G177400 Sobic002G177400 Sobic008G117200--Sobic002G177400 Sobic002G421700 Sobic002G421700 Sobic008G117200--Sobic002G421700 Sobic007G116400 Sobic007G116400 Sobic008G117200--Sobic007G116400 Sobic007G011400 Sobic007G011400 Sobic008G117200--Sobic007G011400 Sobic001G477800 Sobic001G477800 Sobic008G117200--Sobic001G477800 Sobic006G009400 Sobic006G009400 Sobic010G263800--Sobic006G009400 Sobic010G263800--Sobic007G011400 Sobic002G077200 Sobic002G077200 Sobic010G263800--Sobic002G077200 Sobic002G313300 Sobic002G313300 Sobic010G263800--Sobic002G313300 Sobic002G157300 Sobic002G157300 Sobic010G263800--Sobic002G157300 Sobic007G205800 Sobic007G205800 Sobic010G263800--Sobic007G205800 Sobic009G117400 Sobic009G117400 Sobic010G263800--Sobic009G117400 Sobic001G347600 Sobic001G347600 Sobic010G263800--Sobic001G347600 Sobic010G263800--Sobic008G034600 Sobic008G034600--Sobic007G205800 Sobic008G034600--Sobic007G011400 Sobic008G034600--Sobic010G263800 Sobic004G271900 Sobic004G271900 Sobic008G034600--Sobic004G271900 Sobic008G034600--Sobic008G117200 Sobic008G034600--Sobic002G421700 Sobic009G022200 Sobic009G022200 Sobic008G034600--Sobic009G022200 Sobic007G224900 Sobic007G224900 Sobic008G034600--Sobic007G224900 Sobic003G346000 Sobic003G346000 Sobic008G034600--Sobic003G346000 Sobic001G094000--Sobic007G011400 Sobic009G040700 Sobic009G040700 Sobic001G094000--Sobic009G040700 Sobic001G094000--Sobic001G477800 Sobic002G157000 Sobic002G157000 Sobic001G094000--Sobic002G157000 Sobic003G268300 Sobic003G268300 Sobic001G094000--Sobic003G268300 Sobic001G094000--Sobic002G157300 Sobic003G187400 Sobic003G187400 Sobic001G094000--Sobic003G187400 Sobic004G031700 Sobic004G031700 Sobic001G094000--Sobic004G031700 Sobic006G080300 Sobic006G080300 Sobic001G094000--Sobic006G080300 Sobic004G088400--Sobic002G177400 Sobic007G008800 Sobic007G008800 Sobic004G088400--Sobic007G008800 Sobic003G336800 Sobic003G336800 Sobic004G088400--Sobic003G336800 Sobic004G088400--Sobic008G117200 Sobic003G026300 Sobic003G026300 Sobic004G088400--Sobic003G026300 Sobic004G088400--Sobic003G346000 Sobic008G129700 Sobic008G129700 Sobic004G088400--Sobic008G129700 Sobic004G088400--Sobic007G116400 Sobic009G030300 Sobic009G030300 Sobic004G088400--Sobic009G030300 Sobic002G177400--Sobic004G088400 Sobic002G177400--Sobic009G030300 Sobic002G177400--Sobic008G117200 Sobic002G177400--Sobic007G008800 Sobic002G177400--Sobic008G129700 Sobic002G177400--Sobic007G116400 Sobic002G177400--Sobic003G346000 Sobic004G061900 Sobic004G061900 Sobic002G177400--Sobic004G061900 Sobic008G068800 Sobic008G068800 Sobic002G177400--Sobic008G068800 Sobic002G421700--Sobic008G034600 Sobic002G421700--Sobic008G117200 Sobic001G454301 Sobic001G454301 Sobic002G421700--Sobic001G454301 Sobic002G061400 Sobic002G061400 Sobic002G421700--Sobic002G061400 Sobic005G015900 Sobic005G015900 Sobic002G421700--Sobic005G015900 Sobic002G421700--Sobic008G129700 Sobic002G421700--Sobic007G116400 Sobic002G421700--Sobic001G094000 Sobic006G217200 Sobic006G217200 Sobic002G421700--Sobic006G217200 Sobic007G116400--Sobic001G094000 Sobic007G116400--Sobic001G454301 Sobic009G104300 Sobic009G104300 Sobic007G116400--Sobic009G104300 Sobic007G116400--Sobic008G068800 Sobic007G116400--Sobic008G117200 Sobic007G116400--Sobic006G080300 Sobic004G169501 Sobic004G169501 Sobic007G116400--Sobic004G169501 Sobic007G116400--Sobic001G477800 Sobic009G239351 Sobic009G239351 Sobic007G116400--Sobic009G239351 Sobic007G011400--Sobic001G094000 Sobic007G011400--Sobic007G205800 Sobic007G011400--Sobic002G157300 Sobic007G011400--Sobic010G263800 Sobic007G011400--Sobic002G313300 Sobic007G011400--Sobic009G040700 Sobic007G011400--Sobic002G157000 Sobic001G162300 Sobic001G162300 Sobic007G011400--Sobic001G162300 Sobic007G011400--Sobic008G034600 Sobic001G477800--Sobic002G313300 Sobic001G477800--Sobic004G031700 Sobic001G477800--Sobic001G094000 Sobic001G544200 Sobic001G544200 Sobic001G477800--Sobic001G544200 Sobic001G543900 Sobic001G543900 Sobic001G477800--Sobic001G543900 Sobic001G477800--Sobic006G080300 Sobic001G477800--Sobic009G040700 Sobic001G477800--Sobic007G011400 Sobic001G477800--Sobic006G009400
Octagon: transcription factors


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