Gene annotation
Transcriptome id Sobic.004G088400.2,Sobic.004G088400.3,Sobic.004G088400.1
Synonym NIG, Sb04g007320
Functional annotation GTPase-activating protein, putative, expressed
UniProt A0A194YNF9 , A0A194YNH0
Pfam PF01412
Panther DB PTHR23180 PTHR23180:SF200
NCBI CDD KOG0702; Predicted GTPase-activating protein
KEGG Orthology -
Gene Ontology GO:0005096; GTPase activator activity


Orthologs (automatic annotation)
TAIR AT4G13350 : NSP (nuclear shuttle protein)-interacting GTPase
RAP-DB (Rice) LOC_Os02g11820.2 : GTPase-activating protein, putative, expressed
MaizeGDB (Corn) Zm00025a020228 , Zm00025a034594
Brachypodium KQJ93988 , KQJ93990
Barley HORVU6Hr1G036640.7 , HORVU6Hr1G036640.6 , HORVU6Hr1G036640.5 , HORVU6Hr1G036640.4 , HORVU6Hr1G036640.3 , HORVU6Hr1G036640.2 , HORVU6Hr1G036640.1 , HORVU6Hr1G036640.9 , HORVU6Hr1G036640.8 , HORVU6Hr1G036640.19 , HORVU6Hr1G036640.18 , HORVU6Hr1G036640.17 , HORVU6Hr1G036640.16 , HORVU6Hr1G036640.15 , HORVU6Hr1G036640.14 , HORVU6Hr1G036640.13 , HORVU6Hr1G036640.12 , HORVU6Hr1G036640.11 , HORVU6Hr1G036640.10 , HORVU6Hr1G036640.26 , HORVU6Hr1G036640.24 , HORVU6Hr1G036640.25 , HORVU6Hr1G036640.22 , HORVU6Hr1G036640.23 , HORVU6Hr1G036640.20 , HORVU6Hr1G036640.21
Wheat TraesCS6B02G206400 , TraesCS6B02G206400 , TraesCS6B02G206400 , TraesCS6B02G206400 , TraesCS6B02G206400 , TraesCS6D02G165700 , TraesCS6D02G165700 , TraesCS6D02G165700 , TraesCS6D02G165700 , TraesCS6D02G165700 , TraesCS6A02G179200 , TraesCS6A02G179200 , TraesCS6A02G179200 , TraesCS6A02G179200 , TraesCS6A02G179200 , TraesCS6A02G179200
Populus -


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cDNA sequences
Sobic.004G088400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G177400 expressed protein -
2 Sobic.007G008800 VHS and GAT domain containing protein, expressed -
3 Sobic.003G336800 expressed protein -
4 Sobic.008G117200 RING finger and CHY zinc finger domain-containing protein 1, putative, expressed K10144: RCHY1, RING finger and CHY zinc finger domain-containing protein 1
5 Sobic.003G026300 BES1/BZR1 homolog protein, putative, expressed -
6 Sobic.003G346000 IQ calmodulin-binding motif domain containing protein, expressed -
7 Sobic.008G129700 PAPA-1-like conserved region family protein, expressed K11666: INO80B, ZNHIT4, INO80 complex subunit B
8 Sobic.007G116400 - -
9 Sobic.009G030300 RNA polymerase II-associated protein 3, putative, expressed -
10 Sobic.002G061400 OsFBX237 - F-box domain containing protein, expressed -
11 Sobic.007G130300 ES43 protein, putative, expressed -
12 Sobic.002G421700 OsFBX368 - F-box domain containing protein, expressed -
13 Sobic.008G034600 protein kinase PKN/PRK1, effector, putative, expressed -
14 Sobic.008G068800 cytokinin inducible protein, putative, expressed -
15 Sobic.004G027100 ADP-ribosylation factor, putative, expressed K07977: Arf/Sar family, other
16 Sobic.004G169501 - -
17 Sobic.001G454301 - -
18 Sobic.002G140800 RNA pseudouridine synthase, putative, expressed -
19 Sobic.003G359300 ELM2 domain containing protein, putative, expressed -
20 Sobic.002G313300 bromodomain domain containing protein, expressed -


Gene co-expression network
sample Sobic004G088400 Sobic004G088400 Sobic002G177400 Sobic002G177400 Sobic004G088400--Sobic002G177400 Sobic007G008800 Sobic007G008800 Sobic004G088400--Sobic007G008800 Sobic003G336800 Sobic003G336800 Sobic004G088400--Sobic003G336800 Sobic008G117200 Sobic008G117200 Sobic004G088400--Sobic008G117200 Sobic003G026300 Sobic003G026300 Sobic004G088400--Sobic003G026300 Sobic003G346000 Sobic003G346000 Sobic004G088400--Sobic003G346000 Sobic008G129700 Sobic008G129700 Sobic004G088400--Sobic008G129700 Sobic007G116400 Sobic007G116400 Sobic004G088400--Sobic007G116400 Sobic009G030300 Sobic009G030300 Sobic004G088400--Sobic009G030300 Sobic002G177400--Sobic004G088400 Sobic002G177400--Sobic009G030300 Sobic002G177400--Sobic008G117200 Sobic002G177400--Sobic007G008800 Sobic002G177400--Sobic008G129700 Sobic002G177400--Sobic007G116400 Sobic002G177400--Sobic003G346000 Sobic004G061900 Sobic004G061900 Sobic002G177400--Sobic004G061900 Sobic008G068800 Sobic008G068800 Sobic002G177400--Sobic008G068800 Sobic007G008800--Sobic003G026300 Sobic007G008800--Sobic004G088400 SobicK009900 SobicK009900 Sobic007G008800--SobicK009900 Sobic007G008800--Sobic002G177400 Sobic004G076732 Sobic004G076732 Sobic007G008800--Sobic004G076732 Sobic002G410200 Sobic002G410200 Sobic007G008800--Sobic002G410200 Sobic001G024200 Sobic001G024200 Sobic007G008800--Sobic001G024200 Sobic005G139800 Sobic005G139800 Sobic007G008800--Sobic005G139800 Sobic001G271801 Sobic001G271801 Sobic007G008800--Sobic001G271801 Sobic003G336800--Sobic004G088400 Sobic003G336800--Sobic008G129700 Sobic002G061400 Sobic002G061400 Sobic003G336800--Sobic002G061400 Sobic010G174800 Sobic010G174800 Sobic003G336800--Sobic010G174800 Sobic001G296500 Sobic001G296500 Sobic003G336800--Sobic001G296500 Sobic010G202600 Sobic010G202600 Sobic003G336800--Sobic010G202600 Sobic010G199800 Sobic010G199800 Sobic003G336800--Sobic010G199800 Sobic006G128800 Sobic006G128800 Sobic003G336800--Sobic006G128800 Sobic003G336800--Sobic007G008800 Sobic010G263800 Sobic010G263800 Sobic008G117200--Sobic010G263800 Sobic008G034600 Sobic008G034600 Sobic008G117200--Sobic008G034600 Sobic001G094000 Sobic001G094000 Sobic008G117200--Sobic001G094000 Sobic008G117200--Sobic004G088400 Sobic008G117200--Sobic002G177400 Sobic002G421700 Sobic002G421700 Sobic008G117200--Sobic002G421700 Sobic008G117200--Sobic007G116400 Sobic007G011400 Sobic007G011400 Sobic008G117200--Sobic007G011400 Sobic001G477800 Sobic001G477800 Sobic008G117200--Sobic001G477800 Sobic003G026300--Sobic007G008800 Sobic004G188300 Sobic004G188300 Sobic003G026300--Sobic004G188300 Sobic003G026300--Sobic004G088400 Sobic005G167300 Sobic005G167300 Sobic003G026300--Sobic005G167300 Sobic007G063200 Sobic007G063200 Sobic003G026300--Sobic007G063200 Sobic001G451000 Sobic001G451000 Sobic003G026300--Sobic001G451000 Sobic003G026300--Sobic005G139800 Sobic002G115801 Sobic002G115801 Sobic003G026300--Sobic002G115801 Sobic005G162600 Sobic005G162600 Sobic003G026300--Sobic005G162600 Sobic002G049000 Sobic002G049000 Sobic003G346000--Sobic002G049000 Sobic003G346000--Sobic007G011400 Sobic003G346000--Sobic008G034600 Sobic002G313300 Sobic002G313300 Sobic003G346000--Sobic002G313300 Sobic002G151600 Sobic002G151600 Sobic003G346000--Sobic002G151600 Sobic003G346000--Sobic004G088400 Sobic003G346000--Sobic007G008800 Sobic003G346000--Sobic002G177400 Sobic004G005400 Sobic004G005400 Sobic003G346000--Sobic004G005400 Sobic008G129700--Sobic003G336800 Sobic008G129700--Sobic004G061900 Sobic008G129700--Sobic002G061400 Sobic008G129700--Sobic008G117200 Sobic008G129700--Sobic002G177400 Sobic007G185900 Sobic007G185900 Sobic008G129700--Sobic007G185900 Sobic008G078100 Sobic008G078100 Sobic008G129700--Sobic008G078100 Sobic003G248500 Sobic003G248500 Sobic008G129700--Sobic003G248500 Sobic008G129700--Sobic004G088400 Sobic007G116400--Sobic001G094000 Sobic001G454301 Sobic001G454301 Sobic007G116400--Sobic001G454301 Sobic009G104300 Sobic009G104300 Sobic007G116400--Sobic009G104300 Sobic007G116400--Sobic008G068800 Sobic007G116400--Sobic008G117200 Sobic006G080300 Sobic006G080300 Sobic007G116400--Sobic006G080300 Sobic004G169501 Sobic004G169501 Sobic007G116400--Sobic004G169501 Sobic007G116400--Sobic001G477800 Sobic009G239351 Sobic009G239351 Sobic007G116400--Sobic009G239351 Sobic009G030300--Sobic002G177400 Sobic001G226000 Sobic001G226000 Sobic009G030300--Sobic001G226000 Sobic009G030300--Sobic004G061900 Sobic009G044900 Sobic009G044900 Sobic009G030300--Sobic009G044900 Sobic004G013600 Sobic004G013600 Sobic009G030300--Sobic004G013600 Sobic009G030300--Sobic004G088400 Sobic009G030300--Sobic008G117200 Sobic002G334600 Sobic002G334600 Sobic009G030300--Sobic002G334600 Sobic009G030300--Sobic008G129700
Octagon: transcription factors


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