Gene annotation
Transcriptome id Sobic.009G030300.2,Sobic.009G030300.1
Synonym Sb09g002530
Functional annotation RNA polymerase II-associated protein 3, putative, expressed
UniProt A0A1B6P6J7 , C5YZG3
Pfam PF13877 PF13414
Panther DB PTHR22904 PTHR22904:SF347
NCBI CDD KOG0553; TPR repeat-containing protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G56440 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os05g03910.1 : RNA polymerase II-associated protein 3, putative, expressed
MaizeGDB (Corn) Zm00025a038164
Brachypodium PNT72013 , KQJ95868 , KQJ95869 , PNT67007
Barley HORVU0Hr1G040000.8 , HORVU0Hr1G040000.9 , HORVU0Hr1G040000.2 , HORVU0Hr1G040000.3 , HORVU0Hr1G040000.1 , HORVU0Hr1G040000.6 , HORVU0Hr1G040000.7 , HORVU0Hr1G040000.4 , HORVU0Hr1G040000.5 , HORVU0Hr1G040000.10 , HORVU0Hr1G040000.11 , HORVU0Hr1G040000.12 , HORVU0Hr1G040000.13 , HORVU0Hr1G040000.14
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G177400 expressed protein -
2 Sobic.001G226000 WD domain, G-beta repeat domain containing protein, expressed K10599: PRPF19, pre-mRNA-processing factor 19
3 Sobic.004G061900 Sad1 / UNC-like C-terminal domain containing protein, putative, expressed K19347: SUN domain-containing protein 1/2
4 Sobic.009G044900 serine/threonine-protein phosphatase 2A regulatory subunit B subunitgamma, putative, expressed K11583: serine/threonine-protein phosphatase 2A regulatory subunit B''
5 Sobic.004G013600 autophagy protein 5, putative, expressed K08339: autophagy-related protein 5
6 Sobic.004G088400 GTPase-activating protein, putative, expressed -
7 Sobic.008G117200 RING finger and CHY zinc finger domain-containing protein 1, putative, expressed K10144: RCHY1, RING finger and CHY zinc finger domain-containing protein 1
8 Sobic.002G334600 OsFBX251 - F-box domain containing protein, expressed -
9 Sobic.008G129700 PAPA-1-like conserved region family protein, expressed K11666: INO80B, ZNHIT4, INO80 complex subunit B
10 Sobic.007G191100 zinc finger DHHC domain-containing protein, putative, expressed K16675: palmitoyltransferase ZDHHC9/14/18
11 Sobic.006G129700 amine oxidase, flavin-containing, domain containing protein, expressed K00231: PPOX, protoporphyrinogen/coproporphyrinogen III oxidase
12 Sobic.002G259800 hydroxyproline-rich glycoprotein family protein, putative, expressed -
13 Sobic.003G433500 Putative splicing factor(PubMedID : 24356560)@serine/arginine repetitive matrix protein 1, putative, expressed K14325: RNA-binding protein with serine-rich domain 1
14 Sobic.003G359300 ELM2 domain containing protein, putative, expressed -
15 Sobic.002G362300 prefoldin, putative, expressed -
16 Sobic.006G267300 expressed protein -
17 Sobic.003G248500 WD domain, G-beta repeat domain containing protein, expressed -
18 Sobic.005G009200 expressed protein -
19 Sobic.008G034600 protein kinase PKN/PRK1, effector, putative, expressed -
20 Sobic.004G345700 TBC domain containing protein, expressed -


Gene co-expression network
sample Sobic009G030300 Sobic009G030300 Sobic002G177400 Sobic002G177400 Sobic009G030300--Sobic002G177400 Sobic001G226000 Sobic001G226000 Sobic009G030300--Sobic001G226000 Sobic004G061900 Sobic004G061900 Sobic009G030300--Sobic004G061900 Sobic009G044900 Sobic009G044900 Sobic009G030300--Sobic009G044900 Sobic004G013600 Sobic004G013600 Sobic009G030300--Sobic004G013600 Sobic004G088400 Sobic004G088400 Sobic009G030300--Sobic004G088400 Sobic008G117200 Sobic008G117200 Sobic009G030300--Sobic008G117200 Sobic002G334600 Sobic002G334600 Sobic009G030300--Sobic002G334600 Sobic008G129700 Sobic008G129700 Sobic009G030300--Sobic008G129700 Sobic002G177400--Sobic004G088400 Sobic002G177400--Sobic009G030300 Sobic002G177400--Sobic008G117200 Sobic007G008800 Sobic007G008800 Sobic002G177400--Sobic007G008800 Sobic002G177400--Sobic008G129700 Sobic007G116400 Sobic007G116400 Sobic002G177400--Sobic007G116400 Sobic003G346000 Sobic003G346000 Sobic002G177400--Sobic003G346000 Sobic002G177400--Sobic004G061900 Sobic008G068800 Sobic008G068800 Sobic002G177400--Sobic008G068800 Sobic001G226000--Sobic009G030300 Sobic006G278700 Sobic006G278700 Sobic001G226000--Sobic006G278700 Sobic006G267300 Sobic006G267300 Sobic001G226000--Sobic006G267300 Sobic003G115100 Sobic003G115100 Sobic001G226000--Sobic003G115100 Sobic002G077900 Sobic002G077900 Sobic001G226000--Sobic002G077900 Sobic009G195200 Sobic009G195200 Sobic001G226000--Sobic009G195200 Sobic003G433500 Sobic003G433500 Sobic001G226000--Sobic003G433500 Sobic001G010600 Sobic001G010600 Sobic001G226000--Sobic001G010600 Sobic001G226000--Sobic004G013600 Sobic007G191100 Sobic007G191100 Sobic004G061900--Sobic007G191100 Sobic004G061900--Sobic008G129700 Sobic006G129700 Sobic006G129700 Sobic004G061900--Sobic006G129700 Sobic004G061900--Sobic008G117200 Sobic004G061900--Sobic009G030300 Sobic004G345700 Sobic004G345700 Sobic004G061900--Sobic004G345700 Sobic004G061900--Sobic002G177400 Sobic001G094000 Sobic001G094000 Sobic004G061900--Sobic001G094000 Sobic004G027100 Sobic004G027100 Sobic004G061900--Sobic004G027100 Sobic009G044900--Sobic009G030300 Sobic002G089900 Sobic002G089900 Sobic009G044900--Sobic002G089900 Sobic006G248500 Sobic006G248500 Sobic009G044900--Sobic006G248500 Sobic009G044900--Sobic003G433500 Sobic009G044900--Sobic002G177400 Sobic004G347100 Sobic004G347100 Sobic009G044900--Sobic004G347100 Sobic001G469800 Sobic001G469800 Sobic009G044900--Sobic001G469800 Sobic002G362300 Sobic002G362300 Sobic009G044900--Sobic002G362300 Sobic009G044900--Sobic004G013600 Sobic001G056200 Sobic001G056200 Sobic004G013600--Sobic001G056200 Sobic001G028400 Sobic001G028400 Sobic004G013600--Sobic001G028400 Sobic003G354100 Sobic003G354100 Sobic004G013600--Sobic003G354100 Sobic010G211300 Sobic010G211300 Sobic004G013600--Sobic010G211300 Sobic004G013600--Sobic006G248500 Sobic007G205000 Sobic007G205000 Sobic004G013600--Sobic007G205000 Sobic004G013600--Sobic009G030300 Sobic003G437500 Sobic003G437500 Sobic004G013600--Sobic003G437500 Sobic007G118200 Sobic007G118200 Sobic004G013600--Sobic007G118200 Sobic004G088400--Sobic002G177400 Sobic004G088400--Sobic007G008800 Sobic003G336800 Sobic003G336800 Sobic004G088400--Sobic003G336800 Sobic004G088400--Sobic008G117200 Sobic003G026300 Sobic003G026300 Sobic004G088400--Sobic003G026300 Sobic004G088400--Sobic003G346000 Sobic004G088400--Sobic008G129700 Sobic004G088400--Sobic007G116400 Sobic004G088400--Sobic009G030300 Sobic010G263800 Sobic010G263800 Sobic008G117200--Sobic010G263800 Sobic008G034600 Sobic008G034600 Sobic008G117200--Sobic008G034600 Sobic008G117200--Sobic001G094000 Sobic008G117200--Sobic004G088400 Sobic008G117200--Sobic002G177400 Sobic002G421700 Sobic002G421700 Sobic008G117200--Sobic002G421700 Sobic008G117200--Sobic007G116400 Sobic007G011400 Sobic007G011400 Sobic008G117200--Sobic007G011400 Sobic001G477800 Sobic001G477800 Sobic008G117200--Sobic001G477800 Sobic002G223300 Sobic002G223300 Sobic002G334600--Sobic002G223300 Sobic002G334600--Sobic009G030300 Sobic007G139400 Sobic007G139400 Sobic002G334600--Sobic007G139400 Sobic007G188900 Sobic007G188900 Sobic002G334600--Sobic007G188900 Sobic003G132700 Sobic003G132700 Sobic002G334600--Sobic003G132700 Sobic002G334600--Sobic002G089900 Sobic002G334600--Sobic003G354100 Sobic002G334600--Sobic009G044900 Sobic002G157200 Sobic002G157200 Sobic002G334600--Sobic002G157200 Sobic008G129700--Sobic003G336800 Sobic008G129700--Sobic004G061900 Sobic002G061400 Sobic002G061400 Sobic008G129700--Sobic002G061400 Sobic008G129700--Sobic008G117200 Sobic008G129700--Sobic002G177400 Sobic007G185900 Sobic007G185900 Sobic008G129700--Sobic007G185900 Sobic008G078100 Sobic008G078100 Sobic008G129700--Sobic008G078100 Sobic003G248500 Sobic003G248500 Sobic008G129700--Sobic003G248500 Sobic008G129700--Sobic004G088400
Octagon: transcription factors


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