Gene annotation
Transcriptome id Sobic.003G248500.1
Synonym Sb03g030490
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt C5XFY8
Pfam PF00400
Panther DB PTHR22889
NCBI CDD KOG1188; WD40 repeat protein
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT2G47790 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os12g19590.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a028137
Brachypodium KQJ81645 , PNT60602
Barley HORVU7Hr1G000820.4 , HORVU7Hr1G000820.8 , HORVU7Hr1G000820.7 , HORVU7Hr1G000820.6 , HORVU7Hr1G000820.5 , HORVU7Hr1G000820.3 , HORVU7Hr1G000820.2 , HORVU7Hr1G000820.1
Wheat TraesCS4A02G498400 , TraesCS7A02G002100
Populus -


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cDNA sequences
Sobic.003G248500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G359300 ELM2 domain containing protein, putative, expressed -
2 Sobic.004G283000 nucleic acid binding protein, putative, expressed -
3 Sobic.010G174800 OsPP2Ac-1 - Phosphatase 2A isoform 1 belonging to family 1, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
4 Sobic.001G390500 SNF1-related protein kinase regulatory subunit beta-1, putative, expressed K07199: 5'-AMP-activated protein kinase, regulatory beta subunit
5 Sobic.002G197100 RAD23 DNA repair protein, putative, expressed K10839: RAD23, UV excision repair protein RAD23
6 Sobic.003G185200 chaperone protein dnaJ 49, putative, expressed K09518: DnaJ homolog subfamily B member 12
7 Sobic.002G365100 RNA recognition motif containing protein, putative, expressed -
8 Sobic.003G051200 Complex I intermediate-associated protein 30 domain containing protein, putative, expressed K18159: NDUFAF1, NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 1
9 Sobic.006G128800 expressed protein -
10 Sobic.004G007300 expressed protein -
11 Sobic.004G263900 RNA-binding motif protein, putative, expressed K12872: RBM22, pre-mRNA-splicing factor RBM22/SLT11
12 Sobic.008G129700 PAPA-1-like conserved region family protein, expressed K11666: INO80B, ZNHIT4, INO80 complex subunit B
13 Sobic.003G205501 - -
14 Sobic.001G056200 expressed protein -
15 Sobic.004G345700 TBC domain containing protein, expressed -
16 Sobic.010G202600 zinc finger, C3HC4 type domain containing protein, expressed K10661: MARCH6, E3 ubiquitin-protein ligase MARCH6
17 Sobic.001G408700 kinesin like protein, putative, expressed K18182: cytochrome c oxidase assembly protein subunit 16
18 Sobic.008G174300 GTPase of unknown function domain containing protein, putative, expressed K14539: large subunit GTPase 1
19 Sobic.003G261300 arginine/serine-rich coiled-coil protein 1, putative, expressed -
20 Sobic.006G267300 expressed protein -


Gene co-expression network
sample Sobic003G248500 Sobic003G248500 Sobic003G359300 Sobic003G359300 Sobic003G248500--Sobic003G359300 Sobic004G283000 Sobic004G283000 Sobic003G248500--Sobic004G283000 Sobic010G174800 Sobic010G174800 Sobic003G248500--Sobic010G174800 Sobic001G390500 Sobic001G390500 Sobic003G248500--Sobic001G390500 Sobic002G197100 Sobic002G197100 Sobic003G248500--Sobic002G197100 Sobic003G185200 Sobic003G185200 Sobic003G248500--Sobic003G185200 Sobic002G365100 Sobic002G365100 Sobic003G248500--Sobic002G365100 Sobic003G051200 Sobic003G051200 Sobic003G248500--Sobic003G051200 Sobic006G128800 Sobic006G128800 Sobic003G248500--Sobic006G128800 Sobic010G033400 Sobic010G033400 Sobic003G359300--Sobic010G033400 Sobic004G263900 Sobic004G263900 Sobic003G359300--Sobic004G263900 Sobic003G359300--Sobic003G248500 Sobic007G063200 Sobic007G063200 Sobic003G359300--Sobic007G063200 Sobic001G028400 Sobic001G028400 Sobic003G359300--Sobic001G028400 Sobic008G174300 Sobic008G174300 Sobic003G359300--Sobic008G174300 Sobic001G056200 Sobic001G056200 Sobic003G359300--Sobic001G056200 Sobic003G359300--Sobic002G365100 Sobic002G058300 Sobic002G058300 Sobic003G359300--Sobic002G058300 Sobic004G283000--Sobic003G248500 Sobic002G388200 Sobic002G388200 Sobic004G283000--Sobic002G388200 Sobic004G007300 Sobic004G007300 Sobic004G283000--Sobic004G007300 Sobic004G350100 Sobic004G350100 Sobic004G283000--Sobic004G350100 Sobic004G283000--Sobic008G174300 Sobic007G118200 Sobic007G118200 Sobic004G283000--Sobic007G118200 Sobic009G257800 Sobic009G257800 Sobic004G283000--Sobic009G257800 Sobic006G173100 Sobic006G173100 Sobic004G283000--Sobic006G173100 Sobic002G157300 Sobic002G157300 Sobic004G283000--Sobic002G157300 Sobic010G174800--Sobic003G248500 Sobic010G174800--Sobic006G128800 Sobic010G174800--Sobic003G185200 Sobic010G174800--Sobic003G359300 Sobic006G130200 Sobic006G130200 Sobic010G174800--Sobic006G130200 Sobic003G336800 Sobic003G336800 Sobic010G174800--Sobic003G336800 Sobic010G174800--Sobic004G263900 Sobic010G174800--Sobic001G390500 Sobic010G174800--Sobic001G028400 Sobic001G083600 Sobic001G083600 Sobic001G390500--Sobic001G083600 Sobic001G390500--Sobic003G248500 Sobic010G055500 Sobic010G055500 Sobic001G390500--Sobic010G055500 Sobic007G111100 Sobic007G111100 Sobic001G390500--Sobic007G111100 Sobic001G390500--Sobic004G263900 Sobic003G189900 Sobic003G189900 Sobic001G390500--Sobic003G189900 Sobic001G390500--Sobic010G174800 Sobic010G071200 Sobic010G071200 Sobic001G390500--Sobic010G071200 Sobic002G084300 Sobic002G084300 Sobic001G390500--Sobic002G084300 Sobic002G197100--Sobic004G007300 Sobic002G197100--Sobic006G173100 Sobic004G345700 Sobic004G345700 Sobic002G197100--Sobic004G345700 Sobic001G176200 Sobic001G176200 Sobic002G197100--Sobic001G176200 Sobic001G090400 Sobic001G090400 Sobic002G197100--Sobic001G090400 Sobic001G425000 Sobic001G425000 Sobic002G197100--Sobic001G425000 Sobic002G197100--Sobic003G248500 Sobic001G514000 Sobic001G514000 Sobic002G197100--Sobic001G514000 Sobic002G370900 Sobic002G370900 Sobic002G197100--Sobic002G370900 Sobic003G185200--Sobic002G365100 Sobic003G185200--Sobic010G174800 Sobic003G185200--Sobic003G248500 Sobic010G202600 Sobic010G202600 Sobic003G185200--Sobic010G202600 Sobic003G261300 Sobic003G261300 Sobic003G185200--Sobic003G261300 Sobic010G000700 Sobic010G000700 Sobic003G185200--Sobic010G000700 Sobic003G185200--Sobic006G128800 Sobic003G185200--Sobic004G263900 Sobic003G185200--Sobic003G336800 Sobic002G365100--Sobic003G185200 Sobic002G365100--Sobic003G261300 Sobic002G365100--Sobic003G248500 Sobic002G365100--Sobic003G359300 Sobic004G246700 Sobic004G246700 Sobic002G365100--Sobic004G246700 Sobic002G365100--Sobic010G055500 Sobic002G365100--Sobic010G174800 Sobic002G365100--Sobic001G028400 Sobic002G365100--Sobic006G128800 Sobic003G051200--Sobic003G248500 Sobic003G051200--Sobic004G283000 Sobic003G051200--Sobic001G390500 Sobic002G378200 Sobic002G378200 Sobic003G051200--Sobic002G378200 Sobic003G051200--Sobic007G111100 Sobic003G051200--Sobic002G365100 Sobic003G051200--Sobic002G388200 Sobic003G051200--Sobic001G083600 Sobic001G371200 Sobic001G371200 Sobic003G051200--Sobic001G371200 Sobic003G205501 Sobic003G205501 Sobic006G128800--Sobic003G205501 Sobic006G128800--Sobic010G174800 Sobic004G349900 Sobic004G349900 Sobic006G128800--Sobic004G349900 Sobic006G128800--Sobic002G157300 Sobic006G128800--Sobic003G261300 Sobic006G128800--Sobic003G248500 Sobic006G128800--Sobic006G130200 Sobic006G128800--Sobic001G514000 Sobic003G008500 Sobic003G008500 Sobic006G128800--Sobic003G008500
Octagon: transcription factors


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