Gene annotation
Transcriptome id Sobic.008G174300.1
Synonym Sb08g021890
Functional annotation GTPase of unknown function domain containing protein, putative, expressed
UniProt C5YSD9 , Q9XHF8
Pfam PF01926
Panther DB PTHR11089 PTHR11089:SF39
NCBI CDD -
KEGG Orthology K14539; large subunit GTPase 1
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT1G08410 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os12g42370.1 : GTPase of unknown function domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a018686 , Zm00025a013326 , Zm00025a040342 , Zm00025a042747 , Zm00025a023792 , Zm00025a004725
Brachypodium KQJ85744 , KQK13975
Barley HORVU5Hr1G007910.10 , HORVU5Hr1G092800.10 , HORVU5Hr1G007910.4 , HORVU5Hr1G007910.5 , HORVU5Hr1G007910.6 , HORVU5Hr1G007910.7 , HORVU5Hr1G007910.1 , HORVU5Hr1G007910.3 , HORVU5Hr1G007910.8 , HORVU5Hr1G007910.2 , HORVU5Hr1G092800.8 , HORVU5Hr1G092800.9 , HORVU5Hr1G092800.1 , HORVU5Hr1G092800.2 , HORVU5Hr1G092800.3 , HORVU5Hr1G092800.4 , HORVU5Hr1G092800.5 , HORVU5Hr1G092800.6 , HORVU5Hr1G092800.7 , HORVU5Hr1G007910.9 , HORVU5Hr1G092800.12 , HORVU5Hr1G092800.13 , HORVU5Hr1G092800.11 , HORVU5Hr1G092800.14 , HORVU5Hr1G092800.15
Wheat TraesCS5A02G030000 , TraesCS5B02G028700 , TraesCS5B02G375600 , TraesCS5B02G375600 , TraesCS5A02G373600 , TraesCS5A02G373600 , TraesCS5A02G373600 , TraesCS5D02G383100 , TraesCS5D02G383100 , TraesCS5D02G038000
Populus PNT19052 , PNT19051


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cDNA sequences
Sobic.008G174300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G131800 expressed protein K15186: ELL-associated factor
2 Sobic.010G260500 pre-mRNA-splicing factor syf2, putative, expressed K12868: pre-mRNA-splicing factor SYF2
3 Sobic.010G033400 splicing factor, putative, expressed K12850: pre-mRNA-splicing factor 38B
4 Sobic.003G081000 transcription factor, putative, expressed K14431: transcription factor TGA
5 Sobic.007G118200 RNA recognition motif containing protein, expressed K12897: transformer-2 protein
6 Sobic.004G263900 RNA-binding motif protein, putative, expressed K12872: RBM22, pre-mRNA-splicing factor RBM22/SLT11
7 Sobic.009G198100 expressed protein -
8 Sobic.003G355000 Transcription initiation factor TFIID subunit A containing protein, expressed K03126: transcription initiation factor TFIID subunit 12
9 Sobic.003G359300 ELM2 domain containing protein, putative, expressed -
10 Sobic.002G084300 ras-related protein, putative, expressed K07901: RAB8A, Ras-related protein Rab-8A
11 Sobic.004G205600 bromodomain domain containing protein, expressed -
12 Sobic.001G056200 expressed protein -
13 Sobic.004G283000 nucleic acid binding protein, putative, expressed -
14 Sobic.001G028400 domain of unknown function domain containing protein, expressed -
15 Sobic.010G202600 zinc finger, C3HC4 type domain containing protein, expressed K10661: MARCH6, E3 ubiquitin-protein ligase MARCH6
16 Sobic.002G388200 LTV1, putative, expressed K14798: protein LTV1
17 Sobic.002G045400 MBTB13 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
18 Sobic.004G350100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05610: UCHL5, ubiquitin carboxyl-terminal hydrolase L5
19 Sobic.007G185900 IBR domain containing protein, putative, expressed K11968: ariadne-1
20 Sobic.001G512900 heat shock protein DnaJ, putative, expressed K09537: DnaJ homolog subfamily C member 17


Gene co-expression network
sample Sobic008G174300 Sobic008G174300 Sobic001G131800 Sobic001G131800 Sobic008G174300--Sobic001G131800 Sobic010G260500 Sobic010G260500 Sobic008G174300--Sobic010G260500 Sobic010G033400 Sobic010G033400 Sobic008G174300--Sobic010G033400 Sobic003G081000 Sobic003G081000 Sobic008G174300--Sobic003G081000 Sobic007G118200 Sobic007G118200 Sobic008G174300--Sobic007G118200 Sobic004G263900 Sobic004G263900 Sobic008G174300--Sobic004G263900 Sobic009G198100 Sobic009G198100 Sobic008G174300--Sobic009G198100 Sobic003G355000 Sobic003G355000 Sobic008G174300--Sobic003G355000 Sobic003G359300 Sobic003G359300 Sobic008G174300--Sobic003G359300 Sobic001G131800--Sobic008G174300 Sobic001G131800--Sobic003G081000 Sobic010G202600 Sobic010G202600 Sobic001G131800--Sobic010G202600 Sobic001G131800--Sobic010G033400 Sobic001G131800--Sobic009G198100 Sobic007G132400 Sobic007G132400 Sobic001G131800--Sobic007G132400 Sobic001G107500 Sobic001G107500 Sobic001G131800--Sobic001G107500 Sobic007G111100 Sobic007G111100 Sobic001G131800--Sobic007G111100 Sobic001G131800--Sobic003G359300 Sobic002G157300 Sobic002G157300 Sobic010G260500--Sobic002G157300 Sobic010G260500--Sobic008G174300 Sobic007G078000 Sobic007G078000 Sobic010G260500--Sobic007G078000 Sobic007G185900 Sobic007G185900 Sobic010G260500--Sobic007G185900 Sobic010G260500--Sobic010G033400 Sobic001G451000 Sobic001G451000 Sobic010G260500--Sobic001G451000 Sobic010G260500--Sobic004G263900 Sobic005G149500 Sobic005G149500 Sobic010G260500--Sobic005G149500 Sobic003G187400 Sobic003G187400 Sobic010G260500--Sobic003G187400 Sobic010G033400--Sobic007G118200 Sobic010G033400--Sobic008G174300 Sobic010G033400--Sobic009G198100 Sobic004G350100 Sobic004G350100 Sobic010G033400--Sobic004G350100 Sobic001G028400 Sobic001G028400 Sobic010G033400--Sobic001G028400 Sobic010G033400--Sobic010G260500 Sobic010G033400--Sobic003G359300 Sobic010G033400--Sobic003G081000 Sobic010G033400--Sobic001G131800 Sobic003G081000--Sobic007G118200 Sobic003G081000--Sobic008G174300 Sobic002G034600 Sobic002G034600 Sobic003G081000--Sobic002G034600 Sobic004G205600 Sobic004G205600 Sobic003G081000--Sobic004G205600 Sobic003G081000--Sobic009G198100 Sobic006G252700 Sobic006G252700 Sobic003G081000--Sobic006G252700 Sobic003G081000--Sobic010G033400 Sobic001G466700 Sobic001G466700 Sobic003G081000--Sobic001G466700 Sobic003G081000--Sobic004G350100 Sobic007G118200--Sobic010G033400 Sobic007G118200--Sobic003G081000 Sobic007G118200--Sobic004G350100 Sobic007G118200--Sobic009G198100 Sobic007G118200--Sobic008G174300 Sobic007G118200--Sobic002G034600 Sobic007G118200--Sobic006G252700 Sobic007G118200--Sobic001G028400 Sobic001G408700 Sobic001G408700 Sobic007G118200--Sobic001G408700 Sobic010G055500 Sobic010G055500 Sobic004G263900--Sobic010G055500 Sobic010G071200 Sobic010G071200 Sobic004G263900--Sobic010G071200 Sobic001G056200 Sobic001G056200 Sobic004G263900--Sobic001G056200 Sobic004G263900--Sobic003G359300 Sobic004G263900--Sobic008G174300 Sobic007G063200 Sobic007G063200 Sobic004G263900--Sobic007G063200 Sobic004G263900--Sobic010G260500 Sobic004G263900--Sobic001G028400 Sobic002G084300 Sobic002G084300 Sobic004G263900--Sobic002G084300 Sobic009G198100--Sobic007G118200 Sobic009G198100--Sobic002G034600 Sobic009G198100--Sobic010G033400 Sobic009G198100--Sobic003G355000 Sobic009G198100--Sobic003G081000 Sobic009G198100--Sobic008G174300 Sobic009G198100--Sobic001G131800 Sobic009G198100--Sobic003G359300 Sobic007G205000 Sobic007G205000 Sobic009G198100--Sobic007G205000 Sobic003G355000--Sobic009G198100 Sobic003G355000--Sobic002G034600 Sobic002G045400 Sobic002G045400 Sobic003G355000--Sobic002G045400 Sobic003G433500 Sobic003G433500 Sobic003G355000--Sobic003G433500 Sobic003G355000--Sobic008G174300 Sobic001G517500 Sobic001G517500 Sobic003G355000--Sobic001G517500 Sobic003G355000--Sobic007G118200 Sobic003G355000--Sobic010G033400 Sobic001G497900 Sobic001G497900 Sobic003G355000--Sobic001G497900 Sobic003G359300--Sobic010G033400 Sobic003G359300--Sobic004G263900 Sobic003G248500 Sobic003G248500 Sobic003G359300--Sobic003G248500 Sobic003G359300--Sobic007G063200 Sobic003G359300--Sobic001G028400 Sobic003G359300--Sobic008G174300 Sobic003G359300--Sobic001G056200 Sobic002G365100 Sobic002G365100 Sobic003G359300--Sobic002G365100 Sobic002G058300 Sobic002G058300 Sobic003G359300--Sobic002G058300
Octagon: transcription factors


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