Gene annotation
Transcriptome id Sobic.004G350100.3,Sobic.004G350100.1,Sobic.004G350100.2
Synonym Sb04g037680, UCH2
Functional annotation ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed
UniProt A0A194YT80 , A0A194YTD0
Pfam PF01088
Panther DB PTHR10589 PTHR10589:SF16
NCBI CDD KOG2778; Ubiquitin C-terminal hydrolase
KEGG Orthology K05610; UCHL5, ubiquitin carboxyl-terminal hydrolase L5
Gene Ontology GO:0006511; ubiquitin-dependent protein catabolic process GO:0005622intracellular GO:0004843thiol-dependent ubiquitin-specific protease activity


Orthologs (automatic annotation)
TAIR AT1G65650 : Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1
RAP-DB (Rice) LOC_Os02g57630.1,LOC_Os02g57630.2 : ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed
MaizeGDB (Corn) Zm00025a022643
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.004G350100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G118200 RNA recognition motif containing protein, expressed K12897: transformer-2 protein
2 Sobic.010G033400 splicing factor, putative, expressed K12850: pre-mRNA-splicing factor 38B
3 Sobic.006G252700 protein kinase domain containing protein, expressed -
4 Sobic.003G081000 transcription factor, putative, expressed K14431: transcription factor TGA
5 Sobic.004G007300 expressed protein -
6 Sobic.009G056800 growth inhibition and differentiation-related protein 88, putative, expressed -
7 Sobic.004G283000 nucleic acid binding protein, putative, expressed -
8 Sobic.001G143500 pleckstrin homology domain-containing protein, putative, expressed -
9 Sobic.001G028400 domain of unknown function domain containing protein, expressed -
10 Sobic.001G056200 expressed protein -
11 Sobic.006G173100 pre-mRNA-processing factor 31, putative, expressed K12844: U4/U6 small nuclear ribonucleoprotein PRP31
12 Sobic.008G174300 GTPase of unknown function domain containing protein, putative, expressed K14539: large subunit GTPase 1
13 Sobic.002G313500 protein kinase PKN/PRK1, effector, putative, expressed -
14 Sobic.001G408700 kinesin like protein, putative, expressed K18182: cytochrome c oxidase assembly protein subunit 16
15 Sobic.009G198100 expressed protein -
16 Sobic.002G388200 LTV1, putative, expressed K14798: protein LTV1
17 Sobic.003G359300 ELM2 domain containing protein, putative, expressed -
18 Sobic.002G010300 photoperiodic flowering time gene(PubMedID : 22394582)@casein kinase II subunit alpha-2, putative, expressed K03097: casein kinase II subunit alpha
19 Sobic.001G356600 KH domain-containing protein, putative, expressed K13162: poly(rC)-binding protein 2
20 Sobic.001G090400 PHD-finger domain containing protein, putative, expressed K11346: inhibitor of growth protein 4


Gene co-expression network
sample Sobic004G350100 Sobic004G350100 Sobic007G118200 Sobic007G118200 Sobic004G350100--Sobic007G118200 Sobic010G033400 Sobic010G033400 Sobic004G350100--Sobic010G033400 Sobic006G252700 Sobic006G252700 Sobic004G350100--Sobic006G252700 Sobic003G081000 Sobic003G081000 Sobic004G350100--Sobic003G081000 Sobic004G007300 Sobic004G007300 Sobic004G350100--Sobic004G007300 Sobic009G056800 Sobic009G056800 Sobic004G350100--Sobic009G056800 Sobic004G283000 Sobic004G283000 Sobic004G350100--Sobic004G283000 Sobic001G143500 Sobic001G143500 Sobic004G350100--Sobic001G143500 Sobic001G028400 Sobic001G028400 Sobic004G350100--Sobic001G028400 Sobic007G118200--Sobic010G033400 Sobic007G118200--Sobic003G081000 Sobic007G118200--Sobic004G350100 Sobic009G198100 Sobic009G198100 Sobic007G118200--Sobic009G198100 Sobic008G174300 Sobic008G174300 Sobic007G118200--Sobic008G174300 Sobic002G034600 Sobic002G034600 Sobic007G118200--Sobic002G034600 Sobic007G118200--Sobic006G252700 Sobic007G118200--Sobic001G028400 Sobic001G408700 Sobic001G408700 Sobic007G118200--Sobic001G408700 Sobic010G033400--Sobic007G118200 Sobic010G033400--Sobic008G174300 Sobic010G033400--Sobic009G198100 Sobic010G033400--Sobic004G350100 Sobic010G033400--Sobic001G028400 Sobic010G260500 Sobic010G260500 Sobic010G033400--Sobic010G260500 Sobic003G359300 Sobic003G359300 Sobic010G033400--Sobic003G359300 Sobic010G033400--Sobic003G081000 Sobic001G131800 Sobic001G131800 Sobic010G033400--Sobic001G131800 Sobic006G252700--Sobic003G081000 Sobic001G466700 Sobic001G466700 Sobic006G252700--Sobic001G466700 Sobic006G252700--Sobic004G350100 Sobic006G252700--Sobic001G143500 Sobic006G252700--Sobic007G118200 Sobic006G278700 Sobic006G278700 Sobic006G252700--Sobic006G278700 Sobic003G401100 Sobic003G401100 Sobic006G252700--Sobic003G401100 Sobic003G439800 Sobic003G439800 Sobic006G252700--Sobic003G439800 Sobic006G252700--Sobic002G034600 Sobic003G081000--Sobic007G118200 Sobic003G081000--Sobic008G174300 Sobic003G081000--Sobic002G034600 Sobic004G205600 Sobic004G205600 Sobic003G081000--Sobic004G205600 Sobic003G081000--Sobic009G198100 Sobic003G081000--Sobic006G252700 Sobic003G081000--Sobic010G033400 Sobic003G081000--Sobic001G466700 Sobic003G081000--Sobic004G350100 Sobic002G197100 Sobic002G197100 Sobic004G007300--Sobic002G197100 Sobic004G007300--Sobic001G408700 Sobic004G345700 Sobic004G345700 Sobic004G007300--Sobic004G345700 Sobic006G092800 Sobic006G092800 Sobic004G007300--Sobic006G092800 Sobic004G007300--Sobic004G350100 Sobic006G173100 Sobic006G173100 Sobic004G007300--Sobic006G173100 Sobic004G007300--Sobic004G283000 Sobic008G129100 Sobic008G129100 Sobic004G007300--Sobic008G129100 Sobic001G056200 Sobic001G056200 Sobic004G007300--Sobic001G056200 Sobic004G021100 Sobic004G021100 Sobic009G056800--Sobic004G021100 Sobic009G056800--Sobic006G173100 Sobic009G056800--Sobic004G350100 Sobic002G388200 Sobic002G388200 Sobic009G056800--Sobic002G388200 Sobic009G056800--Sobic003G081000 Sobic001G512700 Sobic001G512700 Sobic009G056800--Sobic001G512700 Sobic002G157300 Sobic002G157300 Sobic009G056800--Sobic002G157300 Sobic009G056800--Sobic007G118200 Sobic007G104800 Sobic007G104800 Sobic009G056800--Sobic007G104800 Sobic003G248500 Sobic003G248500 Sobic004G283000--Sobic003G248500 Sobic004G283000--Sobic002G388200 Sobic004G283000--Sobic004G007300 Sobic004G283000--Sobic004G350100 Sobic004G283000--Sobic008G174300 Sobic004G283000--Sobic007G118200 Sobic009G257800 Sobic009G257800 Sobic004G283000--Sobic009G257800 Sobic004G283000--Sobic006G173100 Sobic004G283000--Sobic002G157300 Sobic001G143500--Sobic006G252700 Sobic007G111100 Sobic007G111100 Sobic001G143500--Sobic007G111100 Sobic002G313500 Sobic002G313500 Sobic001G143500--Sobic002G313500 Sobic001G143500--Sobic004G350100 Sobic001G143500--Sobic003G401100 Sobic001G143500--Sobic003G439800 Sobic001G143500--Sobic001G466700 Sobic001G143500--Sobic006G278700 Sobic006G267300 Sobic006G267300 Sobic001G143500--Sobic006G267300 Sobic001G028400--Sobic010G033400 Sobic007G063200 Sobic007G063200 Sobic001G028400--Sobic007G063200 Sobic001G028400--Sobic001G056200 Sobic004G263900 Sobic004G263900 Sobic001G028400--Sobic004G263900 Sobic001G028400--Sobic003G359300 Sobic007G205000 Sobic007G205000 Sobic001G028400--Sobic007G205000 Sobic003G437500 Sobic003G437500 Sobic001G028400--Sobic003G437500 Sobic001G028400--Sobic007G118200 Sobic010G211300 Sobic010G211300 Sobic001G028400--Sobic010G211300
Octagon: transcription factors


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