Gene annotation
Transcriptome id Sobic.001G028400.1
Synonym Sb01g002680
Functional annotation domain of unknown function domain containing protein, expressed
UniProt C5WU33
Pfam PF03619
Panther DB PTHR23423 PTHR23423:SF35
NCBI CDD KOG2641; Predicted seven transmembrane receptor - rhodopsin family
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G05940 : Protein of unknown function (DUF300)
RAP-DB (Rice) LOC_Os03g61210.1 : domain of unknown function domain containing protein, expressed
MaizeGDB (Corn) Zm00025a016395 , Zm00025a008886 , Zm00025a045485
Brachypodium KQK20278 , KQK20274 , KQK20275 , KQK20276 , KQK20277 , KQK20272 , KQK20273
Barley HORVU5Hr1G115470.4 , HORVU5Hr1G115470.3 , HORVU5Hr1G115470.2 , HORVU5Hr1G115470.1
Wheat TraesCS5D02G505900 , TraesCS4A02G367500 , TraesCS5B02G505200
Populus -


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cDNA sequences
Sobic.001G028400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G033400 splicing factor, putative, expressed K12850: pre-mRNA-splicing factor 38B
2 Sobic.007G063200 tentative name(PubMedID : 31536532)@core histone H2A/H2B/H3/H4, putative, expressed K08066: NFYC, nuclear transcription factor Y, gamma
3 Sobic.001G056200 expressed protein -
4 Sobic.004G263900 RNA-binding motif protein, putative, expressed K12872: RBM22, pre-mRNA-splicing factor RBM22/SLT11
5 Sobic.003G359300 ELM2 domain containing protein, putative, expressed -
6 Sobic.007G205000 zinc finger family protein, putative, expressed -
7 Sobic.003G437500 syntaxin 6, putative, expressed -
8 Sobic.007G118200 RNA recognition motif containing protein, expressed K12897: transformer-2 protein
9 Sobic.010G211300 protein phosphatase 2C, putative, expressed K17499: PPM1G, protein phosphatase 1G
10 Sobic.004G350100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05610: UCHL5, ubiquitin carboxyl-terminal hydrolase L5
11 Sobic.004G013600 autophagy protein 5, putative, expressed K08339: autophagy-related protein 5
12 Sobic.008G174300 GTPase of unknown function domain containing protein, putative, expressed K14539: large subunit GTPase 1
13 Sobic.004G345700 TBC domain containing protein, expressed -
14 Sobic.009G198100 expressed protein -
15 Sobic.002G084300 ras-related protein, putative, expressed K07901: RAB8A, Ras-related protein Rab-8A
16 Sobic.010G260500 pre-mRNA-splicing factor syf2, putative, expressed K12868: pre-mRNA-splicing factor SYF2
17 Sobic.006G267300 expressed protein -
18 Sobic.004G150400 HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
19 Sobic.002G378200 adaptor complexes medium subunit family domain containing protein, expressed K12402: AP-4 complex subunit mu-1
20 Sobic.010G174800 OsPP2Ac-1 - Phosphatase 2A isoform 1 belonging to family 1, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit


Gene co-expression network
sample Sobic001G028400 Sobic001G028400 Sobic010G033400 Sobic010G033400 Sobic001G028400--Sobic010G033400 Sobic007G063200 Sobic007G063200 Sobic001G028400--Sobic007G063200 Sobic001G056200 Sobic001G056200 Sobic001G028400--Sobic001G056200 Sobic004G263900 Sobic004G263900 Sobic001G028400--Sobic004G263900 Sobic003G359300 Sobic003G359300 Sobic001G028400--Sobic003G359300 Sobic007G205000 Sobic007G205000 Sobic001G028400--Sobic007G205000 Sobic003G437500 Sobic003G437500 Sobic001G028400--Sobic003G437500 Sobic007G118200 Sobic007G118200 Sobic001G028400--Sobic007G118200 Sobic010G211300 Sobic010G211300 Sobic001G028400--Sobic010G211300 Sobic010G033400--Sobic007G118200 Sobic008G174300 Sobic008G174300 Sobic010G033400--Sobic008G174300 Sobic009G198100 Sobic009G198100 Sobic010G033400--Sobic009G198100 Sobic004G350100 Sobic004G350100 Sobic010G033400--Sobic004G350100 Sobic010G033400--Sobic001G028400 Sobic010G260500 Sobic010G260500 Sobic010G033400--Sobic010G260500 Sobic010G033400--Sobic003G359300 Sobic003G081000 Sobic003G081000 Sobic010G033400--Sobic003G081000 Sobic001G131800 Sobic001G131800 Sobic010G033400--Sobic001G131800 Sobic007G063200--Sobic004G263900 Sobic007G063200--Sobic001G028400 Sobic007G063200--Sobic003G359300 Sobic007G063200--Sobic010G033400 Sobic010G071200 Sobic010G071200 Sobic007G063200--Sobic010G071200 Sobic003G026300 Sobic003G026300 Sobic007G063200--Sobic003G026300 Sobic010G055500 Sobic010G055500 Sobic007G063200--Sobic010G055500 Sobic006G257900 Sobic006G257900 Sobic007G063200--Sobic006G257900 Sobic008G142700 Sobic008G142700 Sobic007G063200--Sobic008G142700 Sobic002G084300 Sobic002G084300 Sobic001G056200--Sobic002G084300 Sobic001G056200--Sobic004G263900 Sobic001G408700 Sobic001G408700 Sobic001G056200--Sobic001G408700 Sobic004G013600 Sobic004G013600 Sobic001G056200--Sobic004G013600 Sobic001G056200--Sobic001G028400 Sobic001G056200--Sobic003G437500 Sobic006G088100 Sobic006G088100 Sobic001G056200--Sobic006G088100 Sobic004G007300 Sobic004G007300 Sobic001G056200--Sobic004G007300 Sobic001G056200--Sobic008G174300 Sobic004G263900--Sobic010G055500 Sobic004G263900--Sobic010G071200 Sobic004G263900--Sobic001G056200 Sobic004G263900--Sobic003G359300 Sobic004G263900--Sobic008G174300 Sobic004G263900--Sobic007G063200 Sobic004G263900--Sobic010G260500 Sobic004G263900--Sobic001G028400 Sobic004G263900--Sobic002G084300 Sobic003G359300--Sobic010G033400 Sobic003G359300--Sobic004G263900 Sobic003G248500 Sobic003G248500 Sobic003G359300--Sobic003G248500 Sobic003G359300--Sobic007G063200 Sobic003G359300--Sobic001G028400 Sobic003G359300--Sobic008G174300 Sobic003G359300--Sobic001G056200 Sobic002G365100 Sobic002G365100 Sobic003G359300--Sobic002G365100 Sobic002G058300 Sobic002G058300 Sobic003G359300--Sobic002G058300 Sobic007G205000--Sobic001G028400 Sobic006G278700 Sobic006G278700 Sobic007G205000--Sobic006G278700 Sobic007G205000--Sobic007G118200 Sobic007G205000--Sobic009G198100 Sobic007G205000--Sobic010G033400 Sobic007G205000--Sobic004G013600 Sobic006G267300 Sobic006G267300 Sobic007G205000--Sobic006G267300 Sobic001G010600 Sobic001G010600 Sobic007G205000--Sobic001G010600 Sobic007G205000--Sobic004G350100 Sobic003G437500--Sobic001G028400 Sobic003G437500--Sobic001G056200 Sobic003G437500--Sobic006G088100 Sobic003G202800 Sobic003G202800 Sobic003G437500--Sobic003G202800 Sobic006G092800 Sobic006G092800 Sobic003G437500--Sobic006G092800 Sobic003G437500--Sobic004G013600 Sobic007G088900 Sobic007G088900 Sobic003G437500--Sobic007G088900 Sobic003G437500--Sobic004G263900 Sobic003G437500--Sobic003G359300 Sobic007G118200--Sobic010G033400 Sobic007G118200--Sobic003G081000 Sobic007G118200--Sobic004G350100 Sobic007G118200--Sobic009G198100 Sobic007G118200--Sobic008G174300 Sobic002G034600 Sobic002G034600 Sobic007G118200--Sobic002G034600 Sobic006G252700 Sobic006G252700 Sobic007G118200--Sobic006G252700 Sobic007G118200--Sobic001G028400 Sobic007G118200--Sobic001G408700 Sobic010G211300--Sobic001G028400 Sobic010G211300--Sobic004G013600 Sobic010G211300--Sobic006G267300 Sobic010G211300--Sobic001G056200 Sobic001G083600 Sobic001G083600 Sobic010G211300--Sobic001G083600 Sobic010G211300--Sobic010G033400 Sobic010G211300--Sobic002G084300 Sobic010G211300--Sobic003G437500 Sobic005G000800 Sobic005G000800 Sobic010G211300--Sobic005G000800
Octagon: transcription factors


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