Gene annotation
Transcriptome id Sobic.002G084300.2,Sobic.002G084300.3,Sobic.002G084300.1
Synonym Sb02g007030
Functional annotation ras-related protein, putative, expressed
UniProt A0A1W0W317 , A0A1B6QA23 , A0A1B6QA27
Pfam PF00025
Panther DB PTHR24073 PTHR24073:SF541
NCBI CDD KOG0078; GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins
KEGG Orthology K07901; RAB8A, Ras-related protein Rab-8A
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT5G59840 : Ras-related small GTP-binding family protein
RAP-DB (Rice) LOC_Os07g13530.1 : ras-related protein, putative, expressed
MaizeGDB (Corn) Zm00025a045459 , Zm00025a037706 , Zm00025a013362 , Zm00025a013363
Brachypodium PNT71098 , PNT76789 , KQK12450 , KQK05877
Barley HORVU7Hr1G021170.1 , HORVU2Hr1G064310.1 , HORVU5Hr1G112790.7 , HORVU5Hr1G112790.6 , HORVU5Hr1G112790.5 , HORVU5Hr1G112790.4 , HORVU5Hr1G112790.3 , HORVU5Hr1G112790.2 , HORVU1Hr1G072070.7 , HORVU1Hr1G072070.6 , HORVU1Hr1G072070.5 , HORVU1Hr1G072070.4 , HORVU1Hr1G072070.3 , HORVU1Hr1G072070.2 , HORVU1Hr1G072070.1
Wheat TraesCS1D02G285200 , TraesCS1B02G295600 , TraesCS5B02G489300 , TraesCS5A02G476400 , TraesCS5D02G489700 , TraesCS1A02G286200 , TraesCS1A02G286200 , TraesCS1A02G286200
Populus PNT56261 , PNT56260 , PNT56263 , PNT56262 , PNT19246 , PNT19245


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cDNA sequences
Sobic.002G084300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G056200 expressed protein -
2 Sobic.004G263900 RNA-binding motif protein, putative, expressed K12872: RBM22, pre-mRNA-splicing factor RBM22/SLT11
3 Sobic.008G174300 GTPase of unknown function domain containing protein, putative, expressed K14539: large subunit GTPase 1
4 Sobic.002G378200 adaptor complexes medium subunit family domain containing protein, expressed K12402: AP-4 complex subunit mu-1
5 Sobic.001G028400 domain of unknown function domain containing protein, expressed -
6 Sobic.001G408700 kinesin like protein, putative, expressed K18182: cytochrome c oxidase assembly protein subunit 16
7 Sobic.001G390500 SNF1-related protein kinase regulatory subunit beta-1, putative, expressed K07199: 5'-AMP-activated protein kinase, regulatory beta subunit
8 Sobic.003G081000 transcription factor, putative, expressed K14431: transcription factor TGA
9 Sobic.009G198100 expressed protein -
10 Sobic.007G118200 RNA recognition motif containing protein, expressed K12897: transformer-2 protein
11 Sobic.001G083600 26S proteasome non-ATPase regulatory subunit 10, putative, expressed K06694: 26S proteasome non-ATPase regulatory subunit 10
12 Sobic.001G131800 expressed protein K15186: ELL-associated factor
13 Sobic.004G013600 autophagy protein 5, putative, expressed K08339: autophagy-related protein 5
14 Sobic.010G033400 splicing factor, putative, expressed K12850: pre-mRNA-splicing factor 38B
15 Sobic.010G058900 BSD domain containing protein, expressed -
16 Sobic.010G211300 protein phosphatase 2C, putative, expressed K17499: PPM1G, protein phosphatase 1G
17 Sobic.006G092800 proteasome subunit, putative, expressed K03036: PSMD11, 26S proteasome regulatory subunit N6
18 Sobic.010G028300 bromodomain domain containing protein, expressed -
19 Sobic.004G350100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05610: UCHL5, ubiquitin carboxyl-terminal hydrolase L5
20 Sobic.003G355000 Transcription initiation factor TFIID subunit A containing protein, expressed K03126: transcription initiation factor TFIID subunit 12


Gene co-expression network
sample Sobic002G084300 Sobic002G084300 Sobic001G056200 Sobic001G056200 Sobic002G084300--Sobic001G056200 Sobic004G263900 Sobic004G263900 Sobic002G084300--Sobic004G263900 Sobic008G174300 Sobic008G174300 Sobic002G084300--Sobic008G174300 Sobic002G378200 Sobic002G378200 Sobic002G084300--Sobic002G378200 Sobic001G028400 Sobic001G028400 Sobic002G084300--Sobic001G028400 Sobic001G408700 Sobic001G408700 Sobic002G084300--Sobic001G408700 Sobic001G390500 Sobic001G390500 Sobic002G084300--Sobic001G390500 Sobic003G081000 Sobic003G081000 Sobic002G084300--Sobic003G081000 Sobic009G198100 Sobic009G198100 Sobic002G084300--Sobic009G198100 Sobic001G056200--Sobic002G084300 Sobic001G056200--Sobic004G263900 Sobic001G056200--Sobic001G408700 Sobic004G013600 Sobic004G013600 Sobic001G056200--Sobic004G013600 Sobic001G056200--Sobic001G028400 Sobic003G437500 Sobic003G437500 Sobic001G056200--Sobic003G437500 Sobic006G088100 Sobic006G088100 Sobic001G056200--Sobic006G088100 Sobic004G007300 Sobic004G007300 Sobic001G056200--Sobic004G007300 Sobic001G056200--Sobic008G174300 Sobic010G055500 Sobic010G055500 Sobic004G263900--Sobic010G055500 Sobic010G071200 Sobic010G071200 Sobic004G263900--Sobic010G071200 Sobic004G263900--Sobic001G056200 Sobic003G359300 Sobic003G359300 Sobic004G263900--Sobic003G359300 Sobic004G263900--Sobic008G174300 Sobic007G063200 Sobic007G063200 Sobic004G263900--Sobic007G063200 Sobic010G260500 Sobic010G260500 Sobic004G263900--Sobic010G260500 Sobic004G263900--Sobic001G028400 Sobic004G263900--Sobic002G084300 Sobic001G131800 Sobic001G131800 Sobic008G174300--Sobic001G131800 Sobic008G174300--Sobic010G260500 Sobic010G033400 Sobic010G033400 Sobic008G174300--Sobic010G033400 Sobic008G174300--Sobic003G081000 Sobic007G118200 Sobic007G118200 Sobic008G174300--Sobic007G118200 Sobic008G174300--Sobic004G263900 Sobic008G174300--Sobic009G198100 Sobic003G355000 Sobic003G355000 Sobic008G174300--Sobic003G355000 Sobic008G174300--Sobic003G359300 Sobic006G278700 Sobic006G278700 Sobic002G378200--Sobic006G278700 Sobic004G345700 Sobic004G345700 Sobic002G378200--Sobic004G345700 Sobic002G378200--Sobic002G084300 Sobic002G378200--Sobic004G007300 Sobic004G283000 Sobic004G283000 Sobic002G378200--Sobic004G283000 Sobic002G378200--Sobic001G056200 Sobic002G132300 Sobic002G132300 Sobic002G378200--Sobic002G132300 Sobic002G378200--Sobic001G028400 Sobic003G187200 Sobic003G187200 Sobic002G378200--Sobic003G187200 Sobic001G028400--Sobic010G033400 Sobic001G028400--Sobic007G063200 Sobic001G028400--Sobic001G056200 Sobic001G028400--Sobic004G263900 Sobic001G028400--Sobic003G359300 Sobic007G205000 Sobic007G205000 Sobic001G028400--Sobic007G205000 Sobic001G028400--Sobic003G437500 Sobic001G028400--Sobic007G118200 Sobic010G211300 Sobic010G211300 Sobic001G028400--Sobic010G211300 Sobic003G205501 Sobic003G205501 Sobic001G408700--Sobic003G205501 Sobic001G408700--Sobic004G007300 Sobic001G408700--Sobic004G345700 Sobic001G408700--Sobic001G056200 Sobic001G408700--Sobic007G118200 Sobic006G267300 Sobic006G267300 Sobic001G408700--Sobic006G267300 Sobic002G197100 Sobic002G197100 Sobic001G408700--Sobic002G197100 Sobic001G408700--Sobic004G283000 Sobic010G245000 Sobic010G245000 Sobic001G408700--Sobic010G245000 Sobic001G083600 Sobic001G083600 Sobic001G390500--Sobic001G083600 Sobic003G248500 Sobic003G248500 Sobic001G390500--Sobic003G248500 Sobic001G390500--Sobic010G055500 Sobic007G111100 Sobic007G111100 Sobic001G390500--Sobic007G111100 Sobic001G390500--Sobic004G263900 Sobic003G189900 Sobic003G189900 Sobic001G390500--Sobic003G189900 Sobic010G174800 Sobic010G174800 Sobic001G390500--Sobic010G174800 Sobic001G390500--Sobic010G071200 Sobic001G390500--Sobic002G084300 Sobic003G081000--Sobic007G118200 Sobic003G081000--Sobic008G174300 Sobic002G034600 Sobic002G034600 Sobic003G081000--Sobic002G034600 Sobic004G205600 Sobic004G205600 Sobic003G081000--Sobic004G205600 Sobic003G081000--Sobic009G198100 Sobic006G252700 Sobic006G252700 Sobic003G081000--Sobic006G252700 Sobic003G081000--Sobic010G033400 Sobic001G466700 Sobic001G466700 Sobic003G081000--Sobic001G466700 Sobic004G350100 Sobic004G350100 Sobic003G081000--Sobic004G350100 Sobic009G198100--Sobic007G118200 Sobic009G198100--Sobic002G034600 Sobic009G198100--Sobic010G033400 Sobic009G198100--Sobic003G355000 Sobic009G198100--Sobic003G081000 Sobic009G198100--Sobic008G174300 Sobic009G198100--Sobic001G131800 Sobic009G198100--Sobic003G359300 Sobic009G198100--Sobic007G205000
Octagon: transcription factors


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