Gene annotation
Transcriptome id Sobic.007G118200.1
Synonym
Functional annotation RNA recognition motif containing protein, expressed
UniProt C5YKL5
Pfam PF00076
Panther DB PTHR15241
NCBI CDD -
KEGG Orthology K12897; transformer-2 protein
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT4G35785 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os08g29650.1 : RNA recognition motif containing protein, expressed
MaizeGDB (Corn) Zm00025a030968
Brachypodium KQJ98090 , KQJ98091 , KQJ98092 , PNT68026 , PNT68027 , KQJ98089
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.007G118200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G033400 splicing factor, putative, expressed K12850: pre-mRNA-splicing factor 38B
2 Sobic.003G081000 transcription factor, putative, expressed K14431: transcription factor TGA
3 Sobic.004G350100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05610: UCHL5, ubiquitin carboxyl-terminal hydrolase L5
4 Sobic.009G198100 expressed protein -
5 Sobic.008G174300 GTPase of unknown function domain containing protein, putative, expressed K14539: large subunit GTPase 1
6 Sobic.002G034600 zinc ion binding protein, putative, expressed -
7 Sobic.006G252700 protein kinase domain containing protein, expressed -
8 Sobic.001G028400 domain of unknown function domain containing protein, expressed -
9 Sobic.001G408700 kinesin like protein, putative, expressed K18182: cytochrome c oxidase assembly protein subunit 16
10 Sobic.006G267300 expressed protein -
11 Sobic.006G173100 pre-mRNA-processing factor 31, putative, expressed K12844: U4/U6 small nuclear ribonucleoprotein PRP31
12 Sobic.007G205000 zinc finger family protein, putative, expressed -
13 Sobic.004G283000 nucleic acid binding protein, putative, expressed -
14 Sobic.003G289400 farnesyltransferase subunit beta, putative, expressed K05954: protein farnesyltransferase subunit beta
15 Sobic.009G056800 growth inhibition and differentiation-related protein 88, putative, expressed -
16 Sobic.003G359300 ELM2 domain containing protein, putative, expressed -
17 Sobic.002G388200 LTV1, putative, expressed K14798: protein LTV1
18 Sobic.001G371200 SAC3/GANP family protein, putative, expressed -
19 Sobic.010G260500 pre-mRNA-splicing factor syf2, putative, expressed K12868: pre-mRNA-splicing factor SYF2
20 Sobic.001G056200 expressed protein -


Gene co-expression network
sample Sobic007G118200 Sobic007G118200 Sobic010G033400 Sobic010G033400 Sobic007G118200--Sobic010G033400 Sobic003G081000 Sobic003G081000 Sobic007G118200--Sobic003G081000 Sobic004G350100 Sobic004G350100 Sobic007G118200--Sobic004G350100 Sobic009G198100 Sobic009G198100 Sobic007G118200--Sobic009G198100 Sobic008G174300 Sobic008G174300 Sobic007G118200--Sobic008G174300 Sobic002G034600 Sobic002G034600 Sobic007G118200--Sobic002G034600 Sobic006G252700 Sobic006G252700 Sobic007G118200--Sobic006G252700 Sobic001G028400 Sobic001G028400 Sobic007G118200--Sobic001G028400 Sobic001G408700 Sobic001G408700 Sobic007G118200--Sobic001G408700 Sobic010G033400--Sobic007G118200 Sobic010G033400--Sobic008G174300 Sobic010G033400--Sobic009G198100 Sobic010G033400--Sobic004G350100 Sobic010G033400--Sobic001G028400 Sobic010G260500 Sobic010G260500 Sobic010G033400--Sobic010G260500 Sobic003G359300 Sobic003G359300 Sobic010G033400--Sobic003G359300 Sobic010G033400--Sobic003G081000 Sobic001G131800 Sobic001G131800 Sobic010G033400--Sobic001G131800 Sobic003G081000--Sobic007G118200 Sobic003G081000--Sobic008G174300 Sobic003G081000--Sobic002G034600 Sobic004G205600 Sobic004G205600 Sobic003G081000--Sobic004G205600 Sobic003G081000--Sobic009G198100 Sobic003G081000--Sobic006G252700 Sobic003G081000--Sobic010G033400 Sobic001G466700 Sobic001G466700 Sobic003G081000--Sobic001G466700 Sobic003G081000--Sobic004G350100 Sobic004G350100--Sobic007G118200 Sobic004G350100--Sobic010G033400 Sobic004G350100--Sobic006G252700 Sobic004G350100--Sobic003G081000 Sobic004G007300 Sobic004G007300 Sobic004G350100--Sobic004G007300 Sobic009G056800 Sobic009G056800 Sobic004G350100--Sobic009G056800 Sobic004G283000 Sobic004G283000 Sobic004G350100--Sobic004G283000 Sobic001G143500 Sobic001G143500 Sobic004G350100--Sobic001G143500 Sobic004G350100--Sobic001G028400 Sobic009G198100--Sobic007G118200 Sobic009G198100--Sobic002G034600 Sobic009G198100--Sobic010G033400 Sobic003G355000 Sobic003G355000 Sobic009G198100--Sobic003G355000 Sobic009G198100--Sobic003G081000 Sobic009G198100--Sobic008G174300 Sobic009G198100--Sobic001G131800 Sobic009G198100--Sobic003G359300 Sobic007G205000 Sobic007G205000 Sobic009G198100--Sobic007G205000 Sobic008G174300--Sobic001G131800 Sobic008G174300--Sobic010G260500 Sobic008G174300--Sobic010G033400 Sobic008G174300--Sobic003G081000 Sobic008G174300--Sobic007G118200 Sobic004G263900 Sobic004G263900 Sobic008G174300--Sobic004G263900 Sobic008G174300--Sobic009G198100 Sobic008G174300--Sobic003G355000 Sobic008G174300--Sobic003G359300 Sobic002G034600--Sobic009G198100 Sobic007G119200 Sobic007G119200 Sobic002G034600--Sobic007G119200 Sobic002G034600--Sobic003G081000 Sobic001G473600 Sobic001G473600 Sobic002G034600--Sobic001G473600 Sobic002G034600--Sobic003G355000 Sobic002G034600--Sobic007G118200 Sobic002G264200 Sobic002G264200 Sobic002G034600--Sobic002G264200 Sobic001G356600 Sobic001G356600 Sobic002G034600--Sobic001G356600 Sobic010G236400 Sobic010G236400 Sobic002G034600--Sobic010G236400 Sobic006G252700--Sobic003G081000 Sobic006G252700--Sobic001G466700 Sobic006G252700--Sobic004G350100 Sobic006G252700--Sobic001G143500 Sobic006G252700--Sobic007G118200 Sobic006G278700 Sobic006G278700 Sobic006G252700--Sobic006G278700 Sobic003G401100 Sobic003G401100 Sobic006G252700--Sobic003G401100 Sobic003G439800 Sobic003G439800 Sobic006G252700--Sobic003G439800 Sobic006G252700--Sobic002G034600 Sobic001G028400--Sobic010G033400 Sobic007G063200 Sobic007G063200 Sobic001G028400--Sobic007G063200 Sobic001G056200 Sobic001G056200 Sobic001G028400--Sobic001G056200 Sobic001G028400--Sobic004G263900 Sobic001G028400--Sobic003G359300 Sobic001G028400--Sobic007G205000 Sobic003G437500 Sobic003G437500 Sobic001G028400--Sobic003G437500 Sobic001G028400--Sobic007G118200 Sobic010G211300 Sobic010G211300 Sobic001G028400--Sobic010G211300 Sobic003G205501 Sobic003G205501 Sobic001G408700--Sobic003G205501 Sobic001G408700--Sobic004G007300 Sobic004G345700 Sobic004G345700 Sobic001G408700--Sobic004G345700 Sobic001G408700--Sobic001G056200 Sobic001G408700--Sobic007G118200 Sobic006G267300 Sobic006G267300 Sobic001G408700--Sobic006G267300 Sobic002G197100 Sobic002G197100 Sobic001G408700--Sobic002G197100 Sobic001G408700--Sobic004G283000 Sobic010G245000 Sobic010G245000 Sobic001G408700--Sobic010G245000
Octagon: transcription factors


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