Gene annotation
Transcriptome id Sobic.010G033400.1
Synonym ATSRL1, Sb10g003000
Functional annotation splicing factor, putative, expressed
UniProt C5Z3V3
Pfam PF03371
Panther DB PTHR23142 PTHR23142:SF3
NCBI CDD KOG2888; Putative RNA binding protein
KEGG Orthology K12850; pre-mRNA-splicing factor 38B
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G37370 : PRP38 family protein
RAP-DB (Rice) LOC_Os05g08600.1 : splicing factor, putative, expressed
MaizeGDB (Corn) Zm00025a050060
Brachypodium KQK19908 , KQK07224
Barley HORVU7Hr1G019850.3 , HORVU7Hr1G019850.1 , HORVU7Hr1G019850.2 , HORVU7Hr1G019870.2 , HORVU7Hr1G019870.1 , HORVU7Hr1G019850.4
Wheat TraesCS7A02G088800 , TraesCS7D02G084200 , TraesCS4A02G387900
Populus -


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cDNA sequences
Sobic.010G033400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G118200 RNA recognition motif containing protein, expressed K12897: transformer-2 protein
2 Sobic.008G174300 GTPase of unknown function domain containing protein, putative, expressed K14539: large subunit GTPase 1
3 Sobic.009G198100 expressed protein -
4 Sobic.004G350100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05610: UCHL5, ubiquitin carboxyl-terminal hydrolase L5
5 Sobic.001G028400 domain of unknown function domain containing protein, expressed -
6 Sobic.010G260500 pre-mRNA-splicing factor syf2, putative, expressed K12868: pre-mRNA-splicing factor SYF2
7 Sobic.003G359300 ELM2 domain containing protein, putative, expressed -
8 Sobic.003G081000 transcription factor, putative, expressed K14431: transcription factor TGA
9 Sobic.001G131800 expressed protein K15186: ELL-associated factor
10 Sobic.007G063200 tentative name(PubMedID : 31536532)@core histone H2A/H2B/H3/H4, putative, expressed K08066: NFYC, nuclear transcription factor Y, gamma
11 Sobic.004G205600 bromodomain domain containing protein, expressed -
12 Sobic.001G056200 expressed protein -
13 Sobic.001G090400 PHD-finger domain containing protein, putative, expressed K11346: inhibitor of growth protein 4
14 Sobic.004G263900 RNA-binding motif protein, putative, expressed K12872: RBM22, pre-mRNA-splicing factor RBM22/SLT11
15 Sobic.004G007300 expressed protein -
16 Sobic.003G355000 Transcription initiation factor TFIID subunit A containing protein, expressed K03126: transcription initiation factor TFIID subunit 12
17 Sobic.007G160600 CAMK_CAMK_like.38 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
18 Sobic.007G205000 zinc finger family protein, putative, expressed -
19 Sobic.006G267300 expressed protein -
20 Sobic.001G408700 kinesin like protein, putative, expressed K18182: cytochrome c oxidase assembly protein subunit 16


Gene co-expression network
sample Sobic010G033400 Sobic010G033400 Sobic007G118200 Sobic007G118200 Sobic010G033400--Sobic007G118200 Sobic008G174300 Sobic008G174300 Sobic010G033400--Sobic008G174300 Sobic009G198100 Sobic009G198100 Sobic010G033400--Sobic009G198100 Sobic004G350100 Sobic004G350100 Sobic010G033400--Sobic004G350100 Sobic001G028400 Sobic001G028400 Sobic010G033400--Sobic001G028400 Sobic010G260500 Sobic010G260500 Sobic010G033400--Sobic010G260500 Sobic003G359300 Sobic003G359300 Sobic010G033400--Sobic003G359300 Sobic003G081000 Sobic003G081000 Sobic010G033400--Sobic003G081000 Sobic001G131800 Sobic001G131800 Sobic010G033400--Sobic001G131800 Sobic007G118200--Sobic010G033400 Sobic007G118200--Sobic003G081000 Sobic007G118200--Sobic004G350100 Sobic007G118200--Sobic009G198100 Sobic007G118200--Sobic008G174300 Sobic002G034600 Sobic002G034600 Sobic007G118200--Sobic002G034600 Sobic006G252700 Sobic006G252700 Sobic007G118200--Sobic006G252700 Sobic007G118200--Sobic001G028400 Sobic001G408700 Sobic001G408700 Sobic007G118200--Sobic001G408700 Sobic008G174300--Sobic001G131800 Sobic008G174300--Sobic010G260500 Sobic008G174300--Sobic010G033400 Sobic008G174300--Sobic003G081000 Sobic008G174300--Sobic007G118200 Sobic004G263900 Sobic004G263900 Sobic008G174300--Sobic004G263900 Sobic008G174300--Sobic009G198100 Sobic003G355000 Sobic003G355000 Sobic008G174300--Sobic003G355000 Sobic008G174300--Sobic003G359300 Sobic009G198100--Sobic007G118200 Sobic009G198100--Sobic002G034600 Sobic009G198100--Sobic010G033400 Sobic009G198100--Sobic003G355000 Sobic009G198100--Sobic003G081000 Sobic009G198100--Sobic008G174300 Sobic009G198100--Sobic001G131800 Sobic009G198100--Sobic003G359300 Sobic007G205000 Sobic007G205000 Sobic009G198100--Sobic007G205000 Sobic004G350100--Sobic007G118200 Sobic004G350100--Sobic010G033400 Sobic004G350100--Sobic006G252700 Sobic004G350100--Sobic003G081000 Sobic004G007300 Sobic004G007300 Sobic004G350100--Sobic004G007300 Sobic009G056800 Sobic009G056800 Sobic004G350100--Sobic009G056800 Sobic004G283000 Sobic004G283000 Sobic004G350100--Sobic004G283000 Sobic001G143500 Sobic001G143500 Sobic004G350100--Sobic001G143500 Sobic004G350100--Sobic001G028400 Sobic001G028400--Sobic010G033400 Sobic007G063200 Sobic007G063200 Sobic001G028400--Sobic007G063200 Sobic001G056200 Sobic001G056200 Sobic001G028400--Sobic001G056200 Sobic001G028400--Sobic004G263900 Sobic001G028400--Sobic003G359300 Sobic001G028400--Sobic007G205000 Sobic003G437500 Sobic003G437500 Sobic001G028400--Sobic003G437500 Sobic001G028400--Sobic007G118200 Sobic010G211300 Sobic010G211300 Sobic001G028400--Sobic010G211300 Sobic002G157300 Sobic002G157300 Sobic010G260500--Sobic002G157300 Sobic010G260500--Sobic008G174300 Sobic007G078000 Sobic007G078000 Sobic010G260500--Sobic007G078000 Sobic007G185900 Sobic007G185900 Sobic010G260500--Sobic007G185900 Sobic010G260500--Sobic010G033400 Sobic001G451000 Sobic001G451000 Sobic010G260500--Sobic001G451000 Sobic010G260500--Sobic004G263900 Sobic005G149500 Sobic005G149500 Sobic010G260500--Sobic005G149500 Sobic003G187400 Sobic003G187400 Sobic010G260500--Sobic003G187400 Sobic003G359300--Sobic010G033400 Sobic003G359300--Sobic004G263900 Sobic003G248500 Sobic003G248500 Sobic003G359300--Sobic003G248500 Sobic003G359300--Sobic007G063200 Sobic003G359300--Sobic001G028400 Sobic003G359300--Sobic008G174300 Sobic003G359300--Sobic001G056200 Sobic002G365100 Sobic002G365100 Sobic003G359300--Sobic002G365100 Sobic002G058300 Sobic002G058300 Sobic003G359300--Sobic002G058300 Sobic003G081000--Sobic007G118200 Sobic003G081000--Sobic008G174300 Sobic003G081000--Sobic002G034600 Sobic004G205600 Sobic004G205600 Sobic003G081000--Sobic004G205600 Sobic003G081000--Sobic009G198100 Sobic003G081000--Sobic006G252700 Sobic003G081000--Sobic010G033400 Sobic001G466700 Sobic001G466700 Sobic003G081000--Sobic001G466700 Sobic003G081000--Sobic004G350100 Sobic001G131800--Sobic008G174300 Sobic001G131800--Sobic003G081000 Sobic010G202600 Sobic010G202600 Sobic001G131800--Sobic010G202600 Sobic001G131800--Sobic010G033400 Sobic001G131800--Sobic009G198100 Sobic007G132400 Sobic007G132400 Sobic001G131800--Sobic007G132400 Sobic001G107500 Sobic001G107500 Sobic001G131800--Sobic001G107500 Sobic007G111100 Sobic007G111100 Sobic001G131800--Sobic007G111100 Sobic001G131800--Sobic003G359300
Octagon: transcription factors


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