Gene annotation
Transcriptome id Sobic.007G205000.4,Sobic.007G205000.2,Sobic.007G205000.1,Sobic.007G205000.5,Sobic.007G205000.3
Synonym Sb07g027240
Functional annotation zinc finger family protein, putative, expressed
UniProt A0A1B6PIW5 , A0A1Z5RB01 , A0A1B6PIX9
Pfam PF00641
Panther DB PTHR23111 PTHR23111:SF35
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT1G67325 : Ran BP2/NZF zinc finger-like superfamily protein
RAP-DB (Rice) LOC_Os08g41010.3,LOC_Os08g41010.1 : zinc finger family protein, putative, expressed
MaizeGDB (Corn) Zm00025a030332 , Zm00025a005142
Brachypodium KQJ98984 , KQJ98982 , KQJ98983 , KQJ98980 , KQJ98981 , KQJ98979
Barley HORVU7Hr1G051630.13 , HORVU7Hr1G051630.10 , HORVU7Hr1G051630.14 , HORVU7Hr1G051630.1 , HORVU7Hr1G051630.2 , HORVU7Hr1G051630.4 , HORVU7Hr1G051630.5 , HORVU7Hr1G051630.6 , HORVU7Hr1G051630.7 , HORVU7Hr1G051630.8
Wheat TraesCS7B02G140100 , TraesCS7B02G140100 , TraesCS7B02G140100 , TraesCS7B02G140100 , TraesCS7B02G140100 , TraesCS7D02G250900 , TraesCS7D02G250900 , TraesCS7D02G250900 , TraesCS7D02G250900 , TraesCS7A02G251000 , TraesCS7A02G251000 , TraesCS7A02G251000
Populus PNT46105 , PNT46107 , PNT46106 , PNT46109 , PNT46108


JBrowse

Open New Page


cDNA sequences
Sobic.007G205000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G028400 domain of unknown function domain containing protein, expressed -
2 Sobic.006G278700 expressed protein -
3 Sobic.007G118200 RNA recognition motif containing protein, expressed K12897: transformer-2 protein
4 Sobic.009G198100 expressed protein -
5 Sobic.010G033400 splicing factor, putative, expressed K12850: pre-mRNA-splicing factor 38B
6 Sobic.004G013600 autophagy protein 5, putative, expressed K08339: autophagy-related protein 5
7 Sobic.006G267300 expressed protein -
8 Sobic.001G010600 U2 small nuclear ribonucleoprotein A, putative, expressed K11092: U2 small nuclear ribonucleoprotein A'
9 Sobic.004G350100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05610: UCHL5, ubiquitin carboxyl-terminal hydrolase L5
10 Sobic.002G058300 ES43 protein, putative, expressed -
11 Sobic.001G056200 expressed protein -
12 Sobic.001G143500 pleckstrin homology domain-containing protein, putative, expressed -
13 Sobic.003G359300 ELM2 domain containing protein, putative, expressed -
14 Sobic.002G378200 adaptor complexes medium subunit family domain containing protein, expressed K12402: AP-4 complex subunit mu-1
15 Sobic.001G371200 SAC3/GANP family protein, putative, expressed -
16 Sobic.010G028300 bromodomain domain containing protein, expressed -
17 Sobic.004G345700 TBC domain containing protein, expressed -
18 Sobic.006G252700 protein kinase domain containing protein, expressed -
19 Sobic.001G309100 zinc knuckle domain containing protein, expressed K09250: cellular nucleic acid-binding protein
20 Sobic.002G034600 zinc ion binding protein, putative, expressed -


Gene co-expression network
sample Sobic007G205000 Sobic007G205000 Sobic001G028400 Sobic001G028400 Sobic007G205000--Sobic001G028400 Sobic006G278700 Sobic006G278700 Sobic007G205000--Sobic006G278700 Sobic007G118200 Sobic007G118200 Sobic007G205000--Sobic007G118200 Sobic009G198100 Sobic009G198100 Sobic007G205000--Sobic009G198100 Sobic010G033400 Sobic010G033400 Sobic007G205000--Sobic010G033400 Sobic004G013600 Sobic004G013600 Sobic007G205000--Sobic004G013600 Sobic006G267300 Sobic006G267300 Sobic007G205000--Sobic006G267300 Sobic001G010600 Sobic001G010600 Sobic007G205000--Sobic001G010600 Sobic004G350100 Sobic004G350100 Sobic007G205000--Sobic004G350100 Sobic001G028400--Sobic010G033400 Sobic007G063200 Sobic007G063200 Sobic001G028400--Sobic007G063200 Sobic001G056200 Sobic001G056200 Sobic001G028400--Sobic001G056200 Sobic004G263900 Sobic004G263900 Sobic001G028400--Sobic004G263900 Sobic003G359300 Sobic003G359300 Sobic001G028400--Sobic003G359300 Sobic001G028400--Sobic007G205000 Sobic003G437500 Sobic003G437500 Sobic001G028400--Sobic003G437500 Sobic001G028400--Sobic007G118200 Sobic010G211300 Sobic010G211300 Sobic001G028400--Sobic010G211300 Sobic002G378200 Sobic002G378200 Sobic006G278700--Sobic002G378200 Sobic006G252700 Sobic006G252700 Sobic006G278700--Sobic006G252700 Sobic006G278700--Sobic007G205000 Sobic001G360200 Sobic001G360200 Sobic006G278700--Sobic001G360200 Sobic003G401100 Sobic003G401100 Sobic006G278700--Sobic003G401100 Sobic001G143500 Sobic001G143500 Sobic006G278700--Sobic001G143500 Sobic001G226000 Sobic001G226000 Sobic006G278700--Sobic001G226000 Sobic006G278700--Sobic007G118200 Sobic008G004400 Sobic008G004400 Sobic006G278700--Sobic008G004400 Sobic007G118200--Sobic010G033400 Sobic003G081000 Sobic003G081000 Sobic007G118200--Sobic003G081000 Sobic007G118200--Sobic004G350100 Sobic007G118200--Sobic009G198100 Sobic008G174300 Sobic008G174300 Sobic007G118200--Sobic008G174300 Sobic002G034600 Sobic002G034600 Sobic007G118200--Sobic002G034600 Sobic007G118200--Sobic006G252700 Sobic007G118200--Sobic001G028400 Sobic001G408700 Sobic001G408700 Sobic007G118200--Sobic001G408700 Sobic009G198100--Sobic007G118200 Sobic009G198100--Sobic002G034600 Sobic009G198100--Sobic010G033400 Sobic003G355000 Sobic003G355000 Sobic009G198100--Sobic003G355000 Sobic009G198100--Sobic003G081000 Sobic009G198100--Sobic008G174300 Sobic001G131800 Sobic001G131800 Sobic009G198100--Sobic001G131800 Sobic009G198100--Sobic003G359300 Sobic009G198100--Sobic007G205000 Sobic010G033400--Sobic007G118200 Sobic010G033400--Sobic008G174300 Sobic010G033400--Sobic009G198100 Sobic010G033400--Sobic004G350100 Sobic010G033400--Sobic001G028400 Sobic010G260500 Sobic010G260500 Sobic010G033400--Sobic010G260500 Sobic010G033400--Sobic003G359300 Sobic010G033400--Sobic003G081000 Sobic010G033400--Sobic001G131800 Sobic004G013600--Sobic001G056200 Sobic004G013600--Sobic001G028400 Sobic003G354100 Sobic003G354100 Sobic004G013600--Sobic003G354100 Sobic004G013600--Sobic010G211300 Sobic006G248500 Sobic006G248500 Sobic004G013600--Sobic006G248500 Sobic004G013600--Sobic007G205000 Sobic009G030300 Sobic009G030300 Sobic004G013600--Sobic009G030300 Sobic004G013600--Sobic003G437500 Sobic004G013600--Sobic007G118200 Sobic007G111100 Sobic007G111100 Sobic006G267300--Sobic007G111100 Sobic009G257800 Sobic009G257800 Sobic006G267300--Sobic009G257800 Sobic003G205501 Sobic003G205501 Sobic006G267300--Sobic003G205501 Sobic006G267300--Sobic001G408700 Sobic009G195200 Sobic009G195200 Sobic006G267300--Sobic009G195200 Sobic006G267300--Sobic007G118200 Sobic010G202600 Sobic010G202600 Sobic006G267300--Sobic010G202600 Sobic003G433500 Sobic003G433500 Sobic006G267300--Sobic003G433500 Sobic008G127400 Sobic008G127400 Sobic006G267300--Sobic008G127400 Sobic002G058300 Sobic002G058300 Sobic001G010600--Sobic002G058300 Sobic001G010600--Sobic007G205000 Sobic007G086500 Sobic007G086500 Sobic001G010600--Sobic007G086500 Sobic001G010600--Sobic001G226000 Sobic003G115100 Sobic003G115100 Sobic001G010600--Sobic003G115100 Sobic009G140700 Sobic009G140700 Sobic001G010600--Sobic009G140700 Sobic001G010600--Sobic004G013600 Sobic010G028300 Sobic010G028300 Sobic001G010600--Sobic010G028300 Sobic008G139700 Sobic008G139700 Sobic001G010600--Sobic008G139700 Sobic004G350100--Sobic007G118200 Sobic004G350100--Sobic010G033400 Sobic004G350100--Sobic006G252700 Sobic004G350100--Sobic003G081000 Sobic004G007300 Sobic004G007300 Sobic004G350100--Sobic004G007300 Sobic009G056800 Sobic009G056800 Sobic004G350100--Sobic009G056800 Sobic004G283000 Sobic004G283000 Sobic004G350100--Sobic004G283000 Sobic004G350100--Sobic001G143500 Sobic004G350100--Sobic001G028400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.