Gene annotation
Transcriptome id Sobic.001G010600.1
Synonym Sb01g001040, U2A\'
Functional annotation U2 small nuclear ribonucleoprotein A, putative, expressed
UniProt C5WSV0
Pfam PF14580
Panther DB PTHR10552
NCBI CDD KOG1644; U2-associated snRNP A' protein
KEGG Orthology K11092; U2 small nuclear ribonucleoprotein A'
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G09760 : U2 small nuclear ribonucleoprotein A
RAP-DB (Rice) LOC_Os02g13990.1 : U2 small nuclear ribonucleoprotein A, putative, expressed
MaizeGDB (Corn) Zm00025a009046
Brachypodium KQK12084
Barley HORVU5Hr1G122640.10 , HORVU5Hr1G122640.8 , HORVU5Hr1G122640.9 , HORVU5Hr1G122640.2 , HORVU5Hr1G122640.3 , HORVU5Hr1G122640.1 , HORVU5Hr1G122640.6 , HORVU5Hr1G122640.7 , HORVU5Hr1G122640.4 , HORVU5Hr1G122640.5
Wheat TraesCS5B02G544100 , TraesCS5B02G544100 , TraesCS5B02G544100 , TraesCS4A02G329300 , TraesCS5D02G544000 , TraesCS5B02G543700
Populus -


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cDNA sequences
Sobic.001G010600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G058300 ES43 protein, putative, expressed -
2 Sobic.007G205000 zinc finger family protein, putative, expressed -
3 Sobic.007G086500 expressed protein K16584: HAUS augmin-like complex subunit 1
4 Sobic.001G226000 WD domain, G-beta repeat domain containing protein, expressed K10599: PRPF19, pre-mRNA-processing factor 19
5 Sobic.003G115100 importin subunit alpha, putative, expressed -
6 Sobic.009G140700 PHD finger protein, putative, expressed -
7 Sobic.004G013600 autophagy protein 5, putative, expressed K08339: autophagy-related protein 5
8 Sobic.010G028300 bromodomain domain containing protein, expressed -
9 Sobic.008G139700 bromodomain associated family protein, expressed K14649: transcription initiation factor TFIID subunit 8
10 Sobic.001G080000 expressed protein -
11 Sobic.007G091600 proline rich protein 3, putative, expressed -
12 Sobic.003G401100 WW domain containing protein, expressed K12865: PQBP1, polyglutamine-binding protein 1
13 Sobic.001G507400 PHD-finger domain containing protein, putative, expressed K11346: inhibitor of growth protein 4
14 Sobic.006G267300 expressed protein -
15 Sobic.004G011000 expressed protein K11883: RNA-binding protein NOB1
16 Sobic.001G395100 - K12835: DDX42, ATP-dependent RNA helicase DDX42
17 Sobic.004G078100 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
18 Sobic.002G126500 RNA recognition motif containing protein, expressed -
19 Sobic.001G143500 pleckstrin homology domain-containing protein, putative, expressed -
20 Sobic.009G030300 RNA polymerase II-associated protein 3, putative, expressed -


Gene co-expression network
sample Sobic001G010600 Sobic001G010600 Sobic002G058300 Sobic002G058300 Sobic001G010600--Sobic002G058300 Sobic007G205000 Sobic007G205000 Sobic001G010600--Sobic007G205000 Sobic007G086500 Sobic007G086500 Sobic001G010600--Sobic007G086500 Sobic001G226000 Sobic001G226000 Sobic001G010600--Sobic001G226000 Sobic003G115100 Sobic003G115100 Sobic001G010600--Sobic003G115100 Sobic009G140700 Sobic009G140700 Sobic001G010600--Sobic009G140700 Sobic004G013600 Sobic004G013600 Sobic001G010600--Sobic004G013600 Sobic010G028300 Sobic010G028300 Sobic001G010600--Sobic010G028300 Sobic008G139700 Sobic008G139700 Sobic001G010600--Sobic008G139700 Sobic003G359300 Sobic003G359300 Sobic002G058300--Sobic003G359300 Sobic002G058300--Sobic007G086500 Sobic002G186000 Sobic002G186000 Sobic002G058300--Sobic002G186000 Sobic002G058300--Sobic001G010600 Sobic003G197800 Sobic003G197800 Sobic002G058300--Sobic003G197800 Sobic009G198100 Sobic009G198100 Sobic002G058300--Sobic009G198100 Sobic010G033400 Sobic010G033400 Sobic002G058300--Sobic010G033400 Sobic006G267300 Sobic006G267300 Sobic002G058300--Sobic006G267300 Sobic002G058300--Sobic007G205000 Sobic001G028400 Sobic001G028400 Sobic007G205000--Sobic001G028400 Sobic006G278700 Sobic006G278700 Sobic007G205000--Sobic006G278700 Sobic007G118200 Sobic007G118200 Sobic007G205000--Sobic007G118200 Sobic007G205000--Sobic009G198100 Sobic007G205000--Sobic010G033400 Sobic007G205000--Sobic004G013600 Sobic007G205000--Sobic006G267300 Sobic007G205000--Sobic001G010600 Sobic004G350100 Sobic004G350100 Sobic007G205000--Sobic004G350100 Sobic007G086500--Sobic002G058300 Sobic007G086500--Sobic001G010600 Sobic001G375700 Sobic001G375700 Sobic007G086500--Sobic001G375700 Sobic007G132400 Sobic007G132400 Sobic007G086500--Sobic007G132400 Sobic001G131800 Sobic001G131800 Sobic007G086500--Sobic001G131800 Sobic007G086500--Sobic010G028300 Sobic007G086500--Sobic009G140700 Sobic001G143500 Sobic001G143500 Sobic007G086500--Sobic001G143500 Sobic001G281600 Sobic001G281600 Sobic007G086500--Sobic001G281600 Sobic009G030300 Sobic009G030300 Sobic001G226000--Sobic009G030300 Sobic001G226000--Sobic006G278700 Sobic001G226000--Sobic006G267300 Sobic001G226000--Sobic003G115100 Sobic002G077900 Sobic002G077900 Sobic001G226000--Sobic002G077900 Sobic009G195200 Sobic009G195200 Sobic001G226000--Sobic009G195200 Sobic003G433500 Sobic003G433500 Sobic001G226000--Sobic003G433500 Sobic001G226000--Sobic001G010600 Sobic001G226000--Sobic004G013600 Sobic003G115100--Sobic001G226000 Sobic009G151200 Sobic009G151200 Sobic003G115100--Sobic009G151200 Sobic003G115100--Sobic001G010600 Sobic003G115100--Sobic009G030300 Sobic007G195400 Sobic007G195400 Sobic003G115100--Sobic007G195400 Sobic003G115100--Sobic004G013600 Sobic005G216300 Sobic005G216300 Sobic003G115100--Sobic005G216300 Sobic003G115100--Sobic002G058300 Sobic004G011000 Sobic004G011000 Sobic003G115100--Sobic004G011000 Sobic009G140700--Sobic001G010600 Sobic009G140700--Sobic007G086500 Sobic009G140700--Sobic002G058300 Sobic005G000800 Sobic005G000800 Sobic009G140700--Sobic005G000800 Sobic003G045400 Sobic003G045400 Sobic009G140700--Sobic003G045400 Sobic009G140700--Sobic008G139700 Sobic010G211300 Sobic010G211300 Sobic009G140700--Sobic010G211300 Sobic001G009800 Sobic001G009800 Sobic009G140700--Sobic001G009800 Sobic001G309100 Sobic001G309100 Sobic009G140700--Sobic001G309100 Sobic001G056200 Sobic001G056200 Sobic004G013600--Sobic001G056200 Sobic004G013600--Sobic001G028400 Sobic003G354100 Sobic003G354100 Sobic004G013600--Sobic003G354100 Sobic004G013600--Sobic010G211300 Sobic006G248500 Sobic006G248500 Sobic004G013600--Sobic006G248500 Sobic004G013600--Sobic007G205000 Sobic004G013600--Sobic009G030300 Sobic003G437500 Sobic003G437500 Sobic004G013600--Sobic003G437500 Sobic004G013600--Sobic007G118200 Sobic003G401100 Sobic003G401100 Sobic010G028300--Sobic003G401100 Sobic002G350300 Sobic002G350300 Sobic010G028300--Sobic002G350300 Sobic010G028300--Sobic001G056200 Sobic006G121300 Sobic006G121300 Sobic010G028300--Sobic006G121300 Sobic010G028300--Sobic001G131800 Sobic001G315100 Sobic001G315100 Sobic010G028300--Sobic001G315100 Sobic008G179700 Sobic008G179700 Sobic010G028300--Sobic008G179700 Sobic003G081000 Sobic003G081000 Sobic010G028300--Sobic003G081000 Sobic010G028300--Sobic004G013600 Sobic002G313500 Sobic002G313500 Sobic008G139700--Sobic002G313500 Sobic010G017800 Sobic010G017800 Sobic008G139700--Sobic010G017800 Sobic001G080000 Sobic001G080000 Sobic008G139700--Sobic001G080000 Sobic008G139700--Sobic001G143500 Sobic002G180000 Sobic002G180000 Sobic008G139700--Sobic002G180000 Sobic008G139700--Sobic003G045400 Sobic008G139700--Sobic007G205000 Sobic008G139700--Sobic006G267300 Sobic010G105600 Sobic010G105600 Sobic008G139700--Sobic010G105600
Octagon: transcription factors


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