Gene annotation
Transcriptome id Sobic.001G507400.2,Sobic.001G507400.1
Synonym ATING1, Sb01g047350, ING1
Functional annotation PHD-finger domain containing protein, putative, expressed
UniProt A0A1B6QQJ8 , A0A1B6QQK0
Pfam PF12998
Panther DB PTHR10333
NCBI CDD KOG1973; Chromatin remodeling protein, contains PHD Zn-finger
KEGG Orthology K11346; inhibitor of growth protein 4
Gene Ontology GO:0016568; chromatin organization GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT3G24010 : RING/FYVE/PHD zinc finger superfamily protein
RAP-DB (Rice) LOC_Os03g04980.1 : PHD-finger domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a053400
Brachypodium KQK23700
Barley HORVU4Hr1G078800.2 , HORVU4Hr1G078800.8 , HORVU4Hr1G078800.1 , HORVU4Hr1G078800.5 , HORVU4Hr1G078800.4 , HORVU4Hr1G078800.7 , HORVU4Hr1G078800.6
Wheat TraesCS4B02G307800 , TraesCS4B02G307800 , TraesCS4D02G306000 , TraesCS4D02G306000 , TraesCS4D02G306000 , TraesCS4A02G409000 , TraesCS4A02G409000
Populus -


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cDNA sequences
Sobic.001G507400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G038100 protein kinase PKN/PRK1, effector, putative, expressed -
2 Sobic.007G117100 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed -
3 Sobic.007G191700 expressed protein K08507: unconventional SNARE in the endoplasmic reticulum protein 1
4 Sobic.006G120800 transglutaminase, putative, expressed -
5 Sobic.009G258400 adhesion regulating molecule family, putative, expressed -
6 Sobic.002G014700 OsFBX209 - F-box domain containing protein, expressed -
7 Sobic.003G420700 expressed protein -
8 Sobic.002G204000 26S proteasome non-ATPase regulatory subunit 9, putative, expressed K06693: PSMD9, 26S proteasome regulatory subunit N4
9 Sobic.010G154000 zinc finger protein, putative, expressed K11979: E3 ubiquitin-protein ligase UBR7
10 Sobic.003G132700 OsFBX237 - F-box domain containing protein, expressed -
11 Sobic.010G193800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
12 Sobic.006G110300 SAM domain containing protein, putative, expressed -
13 Sobic.001G395100 - K12835: DDX42, ATP-dependent RNA helicase DDX42
14 Sobic.004G013600 autophagy protein 5, putative, expressed K08339: autophagy-related protein 5
15 Sobic.004G186000 salt tolerant protein, putative, expressed -
16 Sobic.003G247900 eukaryotic translation initiation factor 3 subunit D, putative, expressed K03251: translation initiation factor 3 subunit D
17 Sobic.002G089900 OsFBX237 - F-box domain containing protein, expressed -
18 Sobic.009G192500 OsFBX169 - F-box domain containing protein, expressed -
19 Sobic.002G272600 TBC domain containing protein, expressed -
20 Sobic.006G049100 expressed protein -


Gene co-expression network
sample Sobic001G507400 Sobic001G507400 Sobic001G038100 Sobic001G038100 Sobic001G507400--Sobic001G038100 Sobic007G117100 Sobic007G117100 Sobic001G507400--Sobic007G117100 Sobic007G191700 Sobic007G191700 Sobic001G507400--Sobic007G191700 Sobic006G120800 Sobic006G120800 Sobic001G507400--Sobic006G120800 Sobic009G258400 Sobic009G258400 Sobic001G507400--Sobic009G258400 Sobic002G014700 Sobic002G014700 Sobic001G507400--Sobic002G014700 Sobic003G420700 Sobic003G420700 Sobic001G507400--Sobic003G420700 Sobic002G204000 Sobic002G204000 Sobic001G507400--Sobic002G204000 Sobic010G154000 Sobic010G154000 Sobic001G507400--Sobic010G154000 Sobic001G038100--Sobic002G204000 Sobic001G309100 Sobic001G309100 Sobic001G038100--Sobic001G309100 Sobic001G038100--Sobic001G507400 Sobic001G038100--Sobic006G120800 Sobic001G038100--Sobic007G117100 Sobic001G038100--Sobic003G420700 Sobic004G186000 Sobic004G186000 Sobic001G038100--Sobic004G186000 Sobic006G261100 Sobic006G261100 Sobic001G038100--Sobic006G261100 Sobic004G260400 Sobic004G260400 Sobic001G038100--Sobic004G260400 Sobic007G117100--Sobic001G038100 Sobic003G433500 Sobic003G433500 Sobic007G117100--Sobic003G433500 Sobic003G132700 Sobic003G132700 Sobic007G117100--Sobic003G132700 Sobic007G117100--Sobic006G120800 Sobic007G117100--Sobic001G507400 Sobic007G117100--Sobic001G309100 Sobic003G354100 Sobic003G354100 Sobic007G117100--Sobic003G354100 Sobic007G117100--Sobic002G014700 Sobic002G089900 Sobic002G089900 Sobic007G117100--Sobic002G089900 Sobic010G237900 Sobic010G237900 Sobic007G191700--Sobic010G237900 Sobic007G091600 Sobic007G091600 Sobic007G191700--Sobic007G091600 Sobic004G129300 Sobic004G129300 Sobic007G191700--Sobic004G129300 Sobic001G395100 Sobic001G395100 Sobic007G191700--Sobic001G395100 Sobic005G079800 Sobic005G079800 Sobic007G191700--Sobic005G079800 Sobic010G279700 Sobic010G279700 Sobic007G191700--Sobic010G279700 Sobic006G118700 Sobic006G118700 Sobic007G191700--Sobic006G118700 Sobic007G041300 Sobic007G041300 Sobic007G191700--Sobic007G041300 Sobic001G473600 Sobic001G473600 Sobic007G191700--Sobic001G473600 Sobic006G120800--Sobic001G038100 Sobic006G120800--Sobic007G117100 Sobic006G120800--Sobic009G258400 Sobic006G120800--Sobic001G507400 Sobic007G050300 Sobic007G050300 Sobic006G120800--Sobic007G050300 Sobic006G120800--Sobic006G261100 Sobic006G120800--Sobic010G154000 Sobic010G253100 Sobic010G253100 Sobic006G120800--Sobic010G253100 Sobic001G335500 Sobic001G335500 Sobic006G120800--Sobic001G335500 Sobic001G168900 Sobic001G168900 Sobic009G258400--Sobic001G168900 Sobic009G258400--Sobic006G120800 Sobic004G091200 Sobic004G091200 Sobic009G258400--Sobic004G091200 Sobic001G114500 Sobic001G114500 Sobic009G258400--Sobic001G114500 Sobic009G036200 Sobic009G036200 Sobic009G258400--Sobic009G036200 Sobic002G077900 Sobic002G077900 Sobic009G258400--Sobic002G077900 Sobic001G291800 Sobic001G291800 Sobic009G258400--Sobic001G291800 Sobic003G132000 Sobic003G132000 Sobic009G258400--Sobic003G132000 Sobic009G258400--Sobic001G507400 Sobic002G014700--Sobic003G132700 Sobic002G014700--Sobic007G117100 Sobic002G014700--Sobic003G420700 Sobic002G014700--Sobic001G507400 Sobic002G014700--Sobic001G038100 Sobic009G192500 Sobic009G192500 Sobic002G014700--Sobic009G192500 Sobic009G034400 Sobic009G034400 Sobic002G014700--Sobic009G034400 Sobic003G140900 Sobic003G140900 Sobic002G014700--Sobic003G140900 Sobic002G014700--Sobic001G309100 Sobic010G193800 Sobic010G193800 Sobic003G420700--Sobic010G193800 Sobic003G420700--Sobic001G038100 Sobic003G420700--Sobic002G077900 Sobic003G420700--Sobic001G309100 Sobic001G285300 Sobic001G285300 Sobic003G420700--Sobic001G285300 Sobic003G420700--Sobic007G117100 Sobic003G420700--Sobic002G014700 Sobic009G036900 Sobic009G036900 Sobic003G420700--Sobic009G036900 Sobic003G024800 Sobic003G024800 Sobic003G420700--Sobic003G024800 Sobic002G204000--Sobic001G038100 Sobic002G204000--Sobic004G186000 Sobic004G316900 Sobic004G316900 Sobic002G204000--Sobic004G316900 Sobic004G019600 Sobic004G019600 Sobic002G204000--Sobic004G019600 Sobic001G329300 Sobic001G329300 Sobic002G204000--Sobic001G329300 Sobic002G204000--Sobic010G193800 Sobic004G226800 Sobic004G226800 Sobic002G204000--Sobic004G226800 Sobic001G136900 Sobic001G136900 Sobic002G204000--Sobic001G136900 Sobic002G204000--Sobic001G507400 Sobic004G320100 Sobic004G320100 Sobic010G154000--Sobic004G320100 Sobic010G154000--Sobic006G120800 Sobic010G154000--Sobic001G507400 Sobic006G049100 Sobic006G049100 Sobic010G154000--Sobic006G049100 Sobic001G487100 Sobic001G487100 Sobic010G154000--Sobic001G487100 Sobic006G245700 Sobic006G245700 Sobic010G154000--Sobic006G245700 Sobic003G221500 Sobic003G221500 Sobic010G154000--Sobic003G221500 Sobic010G154000--Sobic009G258400 Sobic004G212700 Sobic004G212700 Sobic010G154000--Sobic004G212700
Octagon: transcription factors


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