Gene annotation
Transcriptome id Sobic.006G049100.2,Sobic.006G049100.4,Sobic.006G049100.1,Sobic.006G049100.3
Synonym Sb06g012940
Functional annotation expressed protein
UniProt C5YEE0 , A0A1Z5RCB6
Pfam -
Panther DB PTHR36037 PTHR36037:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G23910 : -
RAP-DB (Rice) LOC_Os04g31050.1 : expressed protein
MaizeGDB (Corn) Zm00025a011822
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.006G049100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G077500 protein of unknown function DUF1296 domain containing protein, expressed -
2 Sobic.001G042200 ATP/GTP/Ca++ binding protein, putative, expressed K07870: RHOT1, mitochondrial Rho GTPase 1
3 Sobic.001G487100 RNA recognition motif containing protein, putative, expressed -
4 Sobic.007G056500 cullin, putative, expressed K03869: cullin 3
5 Sobic.001G168900 bacterial transferase hexapeptide domain containing protein, expressed K03241: translation initiation factor eIF-2B subunit gamma
6 Sobic.004G345400 WD domain, G-beta repeat domain containing protein, expressed K05757: actin related protein 2/3 complex, subunit 1A/1B
7 Sobic.007G187600 pentatricopeptide, putative, expressed -
8 Sobic.003G132000 proteasome subunit, putative, expressed K12176: COPS2, CSN2, COP9 signalosome complex subunit 2
9 Sobic.001G395100 - K12835: DDX42, ATP-dependent RNA helicase DDX42
10 Sobic.010G154000 zinc finger protein, putative, expressed K11979: E3 ubiquitin-protein ligase UBR7
11 Sobic.004G320100 expressed protein -
12 Sobic.003G121300 expressed protein K15170: mediator of RNA polymerase II transcription subunit 27
13 Sobic.003G354100 expressed protein -
14 Sobic.004G129300 chromatin modification-related protein EAF3, putative, expressed K11339: MORF4L1, MRG15, mortality factor 4-like protein 1
15 Sobic.007G191700 expressed protein K08507: unconventional SNARE in the endoplasmic reticulum protein 1
16 Sobic.009G129600 ABTB1 - Armadillo repeats with a Bric-a-Brac, Tramtrack, Broad Complex BTB domain, expressed -
17 Sobic.005G115500 bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed K13998: dihydrofolate reductase / thymidylate synthase
18 Sobic.002G077900 eukaryotic translation initiation factor 3 subunit E, putative, expressed K03250: EIF3E, translation initiation factor 3 subunit E
19 Sobic.005G198200 F-box/LRR-repeat protein 3, putative, expressed K10268: F-box and leucine-rich repeat protein 2/20
20 Sobic.004G256300 RNA polymerase Rpb4, putative, expressed K03012: RPB4, DNA-directed RNA polymerase II subunit RPB4


Gene co-expression network
sample Sobic006G049100 Sobic006G049100 Sobic010G077500 Sobic010G077500 Sobic006G049100--Sobic010G077500 Sobic001G042200 Sobic001G042200 Sobic006G049100--Sobic001G042200 Sobic001G487100 Sobic001G487100 Sobic006G049100--Sobic001G487100 Sobic007G056500 Sobic007G056500 Sobic006G049100--Sobic007G056500 Sobic001G168900 Sobic001G168900 Sobic006G049100--Sobic001G168900 Sobic004G345400 Sobic004G345400 Sobic006G049100--Sobic004G345400 Sobic007G187600 Sobic007G187600 Sobic006G049100--Sobic007G187600 Sobic003G132000 Sobic003G132000 Sobic006G049100--Sobic003G132000 Sobic001G395100 Sobic001G395100 Sobic006G049100--Sobic001G395100 Sobic010G077500--Sobic001G042200 Sobic010G077500--Sobic006G049100 Sobic010G077500--Sobic004G345400 Sobic010G077500--Sobic007G187600 Sobic003G212900 Sobic003G212900 Sobic010G077500--Sobic003G212900 Sobic008G058800 Sobic008G058800 Sobic010G077500--Sobic008G058800 Sobic010G077500--Sobic007G056500 Sobic002G063900 Sobic002G063900 Sobic010G077500--Sobic002G063900 Sobic009G129600 Sobic009G129600 Sobic010G077500--Sobic009G129600 Sobic001G042200--Sobic010G077500 Sobic001G042200--Sobic004G345400 Sobic001G042200--Sobic007G187600 Sobic001G042200--Sobic008G058800 Sobic001G042200--Sobic007G056500 Sobic001G042200--Sobic003G212900 Sobic007G042900 Sobic007G042900 Sobic001G042200--Sobic007G042900 Sobic009G249700 Sobic009G249700 Sobic001G042200--Sobic009G249700 Sobic006G281700 Sobic006G281700 Sobic001G042200--Sobic006G281700 Sobic001G487100--Sobic003G132000 Sobic004G320100 Sobic004G320100 Sobic001G487100--Sobic004G320100 Sobic001G487100--Sobic006G049100 Sobic003G046300 Sobic003G046300 Sobic001G487100--Sobic003G046300 Sobic003G121300 Sobic003G121300 Sobic001G487100--Sobic003G121300 Sobic001G506000 Sobic001G506000 Sobic001G487100--Sobic001G506000 Sobic003G128300 Sobic003G128300 Sobic001G487100--Sobic003G128300 Sobic004G256300 Sobic004G256300 Sobic001G487100--Sobic004G256300 Sobic005G115500 Sobic005G115500 Sobic001G487100--Sobic005G115500 Sobic006G186400 Sobic006G186400 Sobic007G056500--Sobic006G186400 Sobic002G034600 Sobic002G034600 Sobic007G056500--Sobic002G034600 Sobic007G056500--Sobic001G042200 Sobic007G056500--Sobic010G077500 Sobic010G095700 Sobic010G095700 Sobic007G056500--Sobic010G095700 Sobic004G180900 Sobic004G180900 Sobic007G056500--Sobic004G180900 Sobic007G056500--Sobic001G395100 Sobic001G066300 Sobic001G066300 Sobic007G056500--Sobic001G066300 Sobic006G121300 Sobic006G121300 Sobic007G056500--Sobic006G121300 Sobic001G168900--Sobic007G187600 Sobic004G307500 Sobic004G307500 Sobic001G168900--Sobic004G307500 Sobic002G077900 Sobic002G077900 Sobic001G168900--Sobic002G077900 Sobic001G291800 Sobic001G291800 Sobic001G168900--Sobic001G291800 Sobic009G258400 Sobic009G258400 Sobic001G168900--Sobic009G258400 Sobic001G168900--Sobic001G042200 Sobic001G168900--Sobic006G049100 Sobic004G346100 Sobic004G346100 Sobic001G168900--Sobic004G346100 Sobic001G168900--Sobic003G132000 Sobic004G345400--Sobic001G042200 Sobic004G345400--Sobic010G077500 Sobic004G345400--Sobic009G249700 Sobic004G345400--Sobic007G042900 Sobic004G345400--Sobic004G180900 Sobic004G345400--Sobic006G186400 Sobic004G084500 Sobic004G084500 Sobic004G345400--Sobic004G084500 Sobic004G345400--Sobic007G056500 Sobic003G394200 Sobic003G394200 Sobic004G345400--Sobic003G394200 Sobic007G187600--Sobic001G042200 Sobic010G266500 Sobic010G266500 Sobic007G187600--Sobic010G266500 Sobic007G187600--Sobic001G168900 Sobic007G187600--Sobic010G077500 Sobic001G023800 Sobic001G023800 Sobic007G187600--Sobic001G023800 Sobic008G173100 Sobic008G173100 Sobic007G187600--Sobic008G173100 Sobic001G346900 Sobic001G346900 Sobic007G187600--Sobic001G346900 Sobic001G004100 Sobic001G004100 Sobic007G187600--Sobic001G004100 Sobic003G416700 Sobic003G416700 Sobic007G187600--Sobic003G416700 Sobic001G114500 Sobic001G114500 Sobic003G132000--Sobic001G114500 Sobic006G270600 Sobic006G270600 Sobic003G132000--Sobic006G270600 Sobic003G132000--Sobic003G046300 Sobic008G103300 Sobic008G103300 Sobic003G132000--Sobic008G103300 Sobic003G132000--Sobic001G487100 Sobic004G192900 Sobic004G192900 Sobic003G132000--Sobic004G192900 Sobic009G164000 Sobic009G164000 Sobic003G132000--Sobic009G164000 Sobic002G371700 Sobic002G371700 Sobic003G132000--Sobic002G371700 Sobic003G363700 Sobic003G363700 Sobic003G132000--Sobic003G363700 Sobic001G395100--Sobic006G121300 Sobic001G395100--Sobic002G034600 Sobic007G191700 Sobic007G191700 Sobic001G395100--Sobic007G191700 Sobic001G473600 Sobic001G473600 Sobic001G395100--Sobic001G473600 Sobic001G469800 Sobic001G469800 Sobic001G395100--Sobic001G469800 Sobic007G027700 Sobic007G027700 Sobic001G395100--Sobic007G027700 Sobic001G395100--Sobic007G056500 Sobic006G248500 Sobic006G248500 Sobic001G395100--Sobic006G248500 Sobic001G395100--Sobic001G042200
Octagon: transcription factors


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