Gene annotation
Transcriptome id Sobic.005G115500.1,Sobic.005G115500.2
Synonym Sb05g016730, THY-1
Functional annotation bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed
UniProt C5Y2E9 , A0A1B6PRT5
Pfam PF00186 PF00303
Panther DB PTHR11548 PTHR11548:SF2
NCBI CDD -
KEGG Orthology K13998; dihydrofolate reductase / thymidylate synthase
Gene Ontology GO:0009165; nucleotide biosynthetic process GO:0006545glycine biosynthetic process GO:0004146dihydrofolate reductase activity GO:0006231dTMP biosynthetic process GO:0004799thymidylate synthase activity


Orthologs (automatic annotation)
TAIR AT2G16370 : thymidylate synthase 1
RAP-DB (Rice) LOC_Os11g29390.1 : bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed
MaizeGDB (Corn) Zm00025a003885 , Zm00025a029734 , Zm00025a015633
Brachypodium PNT62755 , KQJ86803
Barley -
Wheat TraesCS2D02G520000 , TraesCS2D02G520000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G291800 eukaryotic translation initiation factor 3 subunit B, putative, expressed K03253: translation initiation factor 3 subunit B
2 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase
3 Sobic.001G248100 histone acetyltransferase GCN5, putative, expressed K06062: PCAF, KAT2, histone acetyltransferase
4 Sobic.002G145800 flowering time control protein FCA, putative, expressed -
5 Sobic.003G099300 expressed protein K18749: LSM14, RAP55, protein LSM14
6 Sobic.007G183300 expressed protein -
7 Sobic.005G110499 - K14006: protein transport protein SEC23
8 Sobic.002G430300 HEAT repeat family protein, putative, expressed K06100: symplekin
9 Sobic.001G051700 expressed protein -
10 Sobic.001G090100 SRPK4, putative, expressed K08832: SRPK3, serine/threonine-protein kinase SRPK3
11 Sobic.002G371700 signal recognition particle 68 kDa protein, putative, expressed K03107: signal recognition particle subunit SRP68
12 Sobic.001G085800 WD domain, G-beta repeat domain containing protein, expressed K14406: cleavage stimulation factor subunit 1
13 Sobic.003G405500 mannosyl-oligosaccharide glucosidase, putative, expressed K01228: mannosyl-oligosaccharide glucosidase
14 Sobic.006G077200 ubiquitin interaction motif-containing protein, putative, expressed -
15 Sobic.003G132000 proteasome subunit, putative, expressed K12176: COPS2, CSN2, COP9 signalosome complex subunit 2
16 Sobic.007G042900 BSD domain-containing protein, putative, expressed K03141: TFIIH1, GTF2H1, transcription initiation factor TFIIH subunit 1
17 Sobic.008G082500 alanyl-tRNA synthetase, putative, expressed K01872: AARS, alanyl-tRNA synthetase
18 Sobic.007G145400 expressed protein -
19 Sobic.005G133800 NEF1, putative, expressed -
20 Sobic.001G035200 ThiF family domain containing protein, putative, expressed K04532: NAE1, amyloid beta precursor protein binding protein 1


Gene co-expression network
sample Sobic005G115500 Sobic005G115500 Sobic001G291800 Sobic001G291800 Sobic005G115500--Sobic001G291800 Sobic001G145400 Sobic001G145400 Sobic005G115500--Sobic001G145400 Sobic001G248100 Sobic001G248100 Sobic005G115500--Sobic001G248100 Sobic002G145800 Sobic002G145800 Sobic005G115500--Sobic002G145800 Sobic003G099300 Sobic003G099300 Sobic005G115500--Sobic003G099300 Sobic007G183300 Sobic007G183300 Sobic005G115500--Sobic007G183300 Sobic005G110499 Sobic005G110499 Sobic005G115500--Sobic005G110499 Sobic002G430300 Sobic002G430300 Sobic005G115500--Sobic002G430300 Sobic001G051700 Sobic001G051700 Sobic005G115500--Sobic001G051700 Sobic004G340400 Sobic004G340400 Sobic001G291800--Sobic004G340400 Sobic001G291800--Sobic001G145400 Sobic001G291800--Sobic005G115500 Sobic004G353000 Sobic004G353000 Sobic001G291800--Sobic004G353000 Sobic010G186600 Sobic010G186600 Sobic001G291800--Sobic010G186600 Sobic009G255600 Sobic009G255600 Sobic001G291800--Sobic009G255600 Sobic008G147200 Sobic008G147200 Sobic001G291800--Sobic008G147200 Sobic007G039400 Sobic007G039400 Sobic001G291800--Sobic007G039400 Sobic001G168900 Sobic001G168900 Sobic001G291800--Sobic001G168900 Sobic006G086600 Sobic006G086600 Sobic001G145400--Sobic006G086600 Sobic001G035200 Sobic001G035200 Sobic001G145400--Sobic001G035200 Sobic010G059500 Sobic010G059500 Sobic001G145400--Sobic010G059500 Sobic006G077200 Sobic006G077200 Sobic001G145400--Sobic006G077200 Sobic003G405500 Sobic003G405500 Sobic001G145400--Sobic003G405500 Sobic010G007100 Sobic010G007100 Sobic001G145400--Sobic010G007100 Sobic001G145400--Sobic004G340400 Sobic009G084900 Sobic009G084900 Sobic001G145400--Sobic009G084900 Sobic004G085000 Sobic004G085000 Sobic001G145400--Sobic004G085000 Sobic002G412700 Sobic002G412700 Sobic001G248100--Sobic002G412700 Sobic010G000800 Sobic010G000800 Sobic001G248100--Sobic010G000800 Sobic007G145400 Sobic007G145400 Sobic001G248100--Sobic007G145400 Sobic001G248100--Sobic005G115500 Sobic010G262100 Sobic010G262100 Sobic001G248100--Sobic010G262100 Sobic006G261400 Sobic006G261400 Sobic001G248100--Sobic006G261400 Sobic002G160700 Sobic002G160700 Sobic001G248100--Sobic002G160700 Sobic004G155600 Sobic004G155600 Sobic001G248100--Sobic004G155600 Sobic001G248100--Sobic003G405500 Sobic006G269800 Sobic006G269800 Sobic002G145800--Sobic006G269800 Sobic003G416700 Sobic003G416700 Sobic002G145800--Sobic003G416700 Sobic002G145800--Sobic007G183300 Sobic001G087600 Sobic001G087600 Sobic002G145800--Sobic001G087600 Sobic002G145800--Sobic001G051700 Sobic003G062300 Sobic003G062300 Sobic002G145800--Sobic003G062300 Sobic002G145800--Sobic008G147200 Sobic001G023000 Sobic001G023000 Sobic002G145800--Sobic001G023000 Sobic002G145800--Sobic010G186600 Sobic010G269100 Sobic010G269100 Sobic003G099300--Sobic010G269100 Sobic004G039600 Sobic004G039600 Sobic003G099300--Sobic004G039600 Sobic005G216300 Sobic005G216300 Sobic003G099300--Sobic005G216300 SobicK004100 SobicK004100 Sobic003G099300--SobicK004100 Sobic001G369000 Sobic001G369000 Sobic003G099300--Sobic001G369000 Sobic003G099300--Sobic005G115500 Sobic002G256200 Sobic002G256200 Sobic003G099300--Sobic002G256200 Sobic006G056200 Sobic006G056200 Sobic003G099300--Sobic006G056200 Sobic009G231700 Sobic009G231700 Sobic003G099300--Sobic009G231700 Sobic005G200800 Sobic005G200800 Sobic007G183300--Sobic005G200800 Sobic007G183300--Sobic002G145800 Sobic007G183300--Sobic003G416700 Sobic003G214600 Sobic003G214600 Sobic007G183300--Sobic003G214600 Sobic010G279900 Sobic010G279900 Sobic007G183300--Sobic010G279900 Sobic002G154000 Sobic002G154000 Sobic007G183300--Sobic002G154000 Sobic005G220000 Sobic005G220000 Sobic007G183300--Sobic005G220000 Sobic007G168300 Sobic007G168300 Sobic007G183300--Sobic007G168300 Sobic007G183300--Sobic001G051700 Sobic003G189600 Sobic003G189600 Sobic005G110499--Sobic003G189600 Sobic001G474400 Sobic001G474400 Sobic005G110499--Sobic001G474400 Sobic001G308400 Sobic001G308400 Sobic005G110499--Sobic001G308400 Sobic003G394200 Sobic003G394200 Sobic005G110499--Sobic003G394200 Sobic004G053500 Sobic004G053500 Sobic005G110499--Sobic004G053500 Sobic002G401500 Sobic002G401500 Sobic005G110499--Sobic002G401500 Sobic006G021700 Sobic006G021700 Sobic005G110499--Sobic006G021700 Sobic002G371700 Sobic002G371700 Sobic005G110499--Sobic002G371700 Sobic003G209200 Sobic003G209200 Sobic005G110499--Sobic003G209200 Sobic004G141800 Sobic004G141800 Sobic002G430300--Sobic004G141800 Sobic001G393700 Sobic001G393700 Sobic002G430300--Sobic001G393700 Sobic002G430300--Sobic003G405500 Sobic003G152400 Sobic003G152400 Sobic002G430300--Sobic003G152400 Sobic002G430300--Sobic001G145400 Sobic005G133800 Sobic005G133800 Sobic002G430300--Sobic005G133800 Sobic002G430300--Sobic001G087600 Sobic006G224800 Sobic006G224800 Sobic002G430300--Sobic006G224800 Sobic002G430300--Sobic002G145800 Sobic001G051700--Sobic003G416700 Sobic001G051700--Sobic002G145800 Sobic006G267600 Sobic006G267600 Sobic001G051700--Sobic006G267600 Sobic001G051700--Sobic002G154000 Sobic001G051700--Sobic006G261400 Sobic001G051700--Sobic006G224800 Sobic001G051700--Sobic007G183300 Sobic010G275500 Sobic010G275500 Sobic001G051700--Sobic010G275500 Sobic001G051700--Sobic003G062300
Octagon: transcription factors


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