Gene annotation
Transcriptome id Sobic.006G077200.1
Synonym Sb06g016430
Functional annotation ubiquitin interaction motif-containing protein, putative, expressed
UniProt C5YGD1
Pfam PF13898
Panther DB PTHR12473 PTHR12473:SF4
NCBI CDD KOG2871; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G43690 : ubiquitin interaction motif-containing protein
RAP-DB (Rice) LOC_Os04g34440.1 : ubiquitin interaction motif-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a056033 , Zm00025a056034
Brachypodium KQJ82594
Barley HORVU2Hr1G074360.2 , HORVU2Hr1G074360.3 , HORVU2Hr1G074360.1 , HORVU2Hr1G074360.6 , HORVU2Hr1G074360.7 , HORVU2Hr1G074360.4 , HORVU2Hr1G074360.5 , HORVU2Hr1G074360.8
Wheat TraesCS2A02G299800 , TraesCS2A02G299800 , TraesCS2B02G316300 , TraesCS2B02G316300 , TraesCS2B02G316300 , TraesCS2B02G316300 , TraesCS2B02G316300 , TraesCS2D02G297900 , TraesCS2D02G297900 , TraesCS2D02G297900 , TraesCS2D02G297900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G084900 expressed protein -
2 Sobic.010G185400 HEAT repeat family protein, putative, expressed K03456: serine/threonine-protein phosphatase 2A regulatory subunit A
3 Sobic.010G059500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12818: DHX8, ATP-dependent RNA helicase DHX8/PRP22
4 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase
5 Sobic.001G493200 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
6 Sobic.003G249600 vacuolar protein sorting-associated protein 16, putative, expressed -
7 Sobic.008G082500 alanyl-tRNA synthetase, putative, expressed K01872: AARS, alanyl-tRNA synthetase
8 Sobic.003G189600 M16 domain containing zinc peptidase, putative, expressed -
9 Sobic.004G096400 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
10 Sobic.001G035200 ThiF family domain containing protein, putative, expressed K04532: NAE1, amyloid beta precursor protein binding protein 1
11 Sobic.004G322400 WD40-like, putative, expressed -
12 Sobic.004G309900 cold-induced protein, putative, expressed K13174: THO complex subunit 5
13 Sobic.010G000800 PHD-finger domain containing protein, expressed -
14 Sobic.003G405500 mannosyl-oligosaccharide glucosidase, putative, expressed K01228: mannosyl-oligosaccharide glucosidase
15 Sobic.006G126100 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
16 Sobic.001G227400 WD domain, G-beta repeat domain containing protein, expressed -
17 Sobic.007G183900 ubiquitin family protein, putative, expressed -
18 Sobic.004G092500 OsPP2Ac-1 - Phosphatase 2A isoform 1 belonging to family 1, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
19 Sobic.004G072100 centromere/kinetochore protein zw10, putative, expressed K11578: ZW10, protein transport protein DSL1/ZW10
20 Sobic.007G218000 chloride transporter, chloride channel family, putative, expressed -


Gene co-expression network
sample Sobic006G077200 Sobic006G077200 Sobic009G084900 Sobic009G084900 Sobic006G077200--Sobic009G084900 Sobic010G185400 Sobic010G185400 Sobic006G077200--Sobic010G185400 Sobic010G059500 Sobic010G059500 Sobic006G077200--Sobic010G059500 Sobic001G145400 Sobic001G145400 Sobic006G077200--Sobic001G145400 Sobic001G493200 Sobic001G493200 Sobic006G077200--Sobic001G493200 Sobic003G249600 Sobic003G249600 Sobic006G077200--Sobic003G249600 Sobic008G082500 Sobic008G082500 Sobic006G077200--Sobic008G082500 Sobic003G189600 Sobic003G189600 Sobic006G077200--Sobic003G189600 Sobic004G096400 Sobic004G096400 Sobic006G077200--Sobic004G096400 Sobic009G084900--Sobic010G059500 Sobic003G072200 Sobic003G072200 Sobic009G084900--Sobic003G072200 Sobic009G084900--Sobic001G493200 Sobic001G433800 Sobic001G433800 Sobic009G084900--Sobic001G433800 Sobic009G131300 Sobic009G131300 Sobic009G084900--Sobic009G131300 Sobic002G133300 Sobic002G133300 Sobic009G084900--Sobic002G133300 Sobic009G084900--Sobic006G077200 Sobic009G084900--Sobic008G082500 Sobic004G260100 Sobic004G260100 Sobic009G084900--Sobic004G260100 Sobic010G185400--Sobic003G189600 Sobic010G185400--Sobic006G077200 Sobic010G185400--Sobic009G084900 Sobic010G185400--Sobic008G082500 Sobic001G035200 Sobic001G035200 Sobic010G185400--Sobic001G035200 Sobic009G126600 Sobic009G126600 Sobic010G185400--Sobic009G126600 Sobic007G042400 Sobic007G042400 Sobic010G185400--Sobic007G042400 Sobic003G416700 Sobic003G416700 Sobic010G185400--Sobic003G416700 Sobic004G072100 Sobic004G072100 Sobic010G185400--Sobic004G072100 Sobic010G059500--Sobic009G084900 Sobic010G059500--Sobic009G131300 Sobic010G059500--Sobic001G035200 Sobic010G059500--Sobic004G096400 Sobic006G234700 Sobic006G234700 Sobic010G059500--Sobic006G234700 Sobic010G059500--Sobic001G145400 Sobic010G034100 Sobic010G034100 Sobic010G059500--Sobic010G034100 Sobic010G059500--Sobic006G077200 Sobic010G059500--Sobic001G493200 Sobic006G086600 Sobic006G086600 Sobic001G145400--Sobic006G086600 Sobic001G145400--Sobic001G035200 Sobic001G145400--Sobic010G059500 Sobic001G145400--Sobic006G077200 Sobic003G405500 Sobic003G405500 Sobic001G145400--Sobic003G405500 Sobic010G007100 Sobic010G007100 Sobic001G145400--Sobic010G007100 Sobic004G340400 Sobic004G340400 Sobic001G145400--Sobic004G340400 Sobic001G145400--Sobic009G084900 Sobic004G085000 Sobic004G085000 Sobic001G145400--Sobic004G085000 Sobic001G493200--Sobic009G084900 Sobic003G266001 Sobic003G266001 Sobic001G493200--Sobic003G266001 Sobic001G493200--Sobic010G059500 Sobic001G493200--Sobic001G433800 Sobic001G493200--Sobic004G072100 Sobic001G493200--Sobic004G096400 Sobic007G132100 Sobic007G132100 Sobic001G493200--Sobic007G132100 Sobic001G493200--Sobic006G077200 Sobic003G408600 Sobic003G408600 Sobic001G493200--Sobic003G408600 Sobic003G249600--Sobic006G077200 Sobic003G249600--Sobic004G096400 Sobic007G120500 Sobic007G120500 Sobic003G249600--Sobic007G120500 Sobic003G249600--Sobic007G132100 Sobic003G126600 Sobic003G126600 Sobic003G249600--Sobic003G126600 Sobic003G249600--Sobic004G072100 Sobic004G322400 Sobic004G322400 Sobic003G249600--Sobic004G322400 Sobic008G124800 Sobic008G124800 Sobic003G249600--Sobic008G124800 Sobic004G039600 Sobic004G039600 Sobic003G249600--Sobic004G039600 Sobic008G082500--Sobic009G084900 Sobic008G082500--Sobic010G185400 Sobic010G206300 Sobic010G206300 Sobic008G082500--Sobic010G206300 Sobic008G082500--Sobic006G077200 Sobic008G082500--Sobic010G059500 Sobic008G082500--Sobic001G493200 Sobic002G020700 Sobic002G020700 Sobic008G082500--Sobic002G020700 Sobic008G082500--Sobic001G145400 Sobic004G023100 Sobic004G023100 Sobic008G082500--Sobic004G023100 Sobic005G110499 Sobic005G110499 Sobic003G189600--Sobic005G110499 Sobic003G189600--Sobic010G185400 Sobic007G218000 Sobic007G218000 Sobic003G189600--Sobic007G218000 Sobic003G189600--Sobic006G077200 Sobic003G394200 Sobic003G394200 Sobic003G189600--Sobic003G394200 Sobic006G224800 Sobic006G224800 Sobic003G189600--Sobic006G224800 Sobic009G249700 Sobic009G249700 Sobic003G189600--Sobic009G249700 Sobic001G308400 Sobic001G308400 Sobic003G189600--Sobic001G308400 Sobic003G189600--Sobic004G322400 Sobic004G096400--Sobic006G234700 Sobic009G192300 Sobic009G192300 Sobic004G096400--Sobic009G192300 Sobic004G096400--Sobic010G059500 Sobic004G096400--Sobic001G493200 Sobic004G096400--Sobic009G084900 Sobic004G096400--Sobic001G433800 Sobic004G096400--Sobic003G249600 Sobic004G096400--Sobic006G077200 Sobic004G096400--Sobic007G132100
Octagon: transcription factors


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