Gene annotation
Transcriptome id Sobic.004G309900.1,Sobic.004G309900.2
Synonym Sb04g034220, AtTHO5, THO5
Functional annotation cold-induced protein, putative, expressed
UniProt C5XSV7
Pfam PF09766
Panther DB PTHR13375 PTHR13375:SF3
NCBI CDD KOG2216; Conserved coiled/coiled coil protein
KEGG Orthology K13174; THO complex subunit 5
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G42920 : THO complex, subunit 5
RAP-DB (Rice) LOC_Os02g52820.1 : cold-induced protein, putative, expressed
MaizeGDB (Corn) Zm00025a022227
Brachypodium KQK01746
Barley HORVU6Hr1G080550.3 , HORVU6Hr1G080550.6 , HORVU6Hr1G080550.7 , HORVU6Hr1G080550.4 , HORVU6Hr1G080550.5 , HORVU6Hr1G080550.2 , HORVU6Hr1G080550.1
Wheat TraesCS6A02G332800 , TraesCS6D02G311700 , TraesCS6D02G311700 , TraesCS6B02G363200 , TraesCS6B02G363200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G133900 exonuclease, putative, expressed K18417: ERI1 exoribonuclease 2
2 Sobic.007G183900 ubiquitin family protein, putative, expressed -
3 Sobic.003G062300 NF-X1-type zinc finger protein, putative, expressed K15683: NFXL1, NF-X1-type zinc finger protein NFXL1
4 Sobic.006G077200 ubiquitin interaction motif-containing protein, putative, expressed -
5 Sobic.004G096400 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
6 Sobic.002G366400 histone deacetylase, putative, expressed K11407: histone deacetylase 6
7 Sobic.006G210000 zinc finger domain, LSD1 subclass family protein, expressed -
8 Sobic.003G416700 homeobox domain containing protein, expressed -
9 Sobic.001G008200 expressed protein K13211: GC-rich sequence DNA-binding factor
10 Sobic.001G493200 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
11 Sobic.003G212900 zinc ion binding protein, putative, expressed -
12 Sobic.006G240100 BRCA1-associated protein, putative, expressed K10632: BRCA1-associated protein
13 Sobic.004G072100 centromere/kinetochore protein zw10, putative, expressed K11578: ZW10, protein transport protein DSL1/ZW10
14 Sobic.004G155600 dnaJ domain containing protein, expressed -
15 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase
16 Sobic.002G145800 flowering time control protein FCA, putative, expressed -
17 Sobic.009G119000 tetratricopeptide repeat containing protein, putative, expressed K09527: DnaJ homolog subfamily C member 7
18 Sobic.010G001100 chromo domain containing protein, expressed -
19 Sobic.006G138000 expressed protein -
20 Sobic.005G220000 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2


Gene co-expression network
sample Sobic004G309900 Sobic004G309900 Sobic003G133900 Sobic003G133900 Sobic004G309900--Sobic003G133900 Sobic007G183900 Sobic007G183900 Sobic004G309900--Sobic007G183900 Sobic003G062300 Sobic003G062300 Sobic004G309900--Sobic003G062300 Sobic006G077200 Sobic006G077200 Sobic004G309900--Sobic006G077200 Sobic004G096400 Sobic004G096400 Sobic004G309900--Sobic004G096400 Sobic002G366400 Sobic002G366400 Sobic004G309900--Sobic002G366400 Sobic006G210000 Sobic006G210000 Sobic004G309900--Sobic006G210000 Sobic003G416700 Sobic003G416700 Sobic004G309900--Sobic003G416700 Sobic001G008200 Sobic001G008200 Sobic004G309900--Sobic001G008200 Sobic003G133900--Sobic004G309900 Sobic001G493200 Sobic001G493200 Sobic003G133900--Sobic001G493200 Sobic002G083500 Sobic002G083500 Sobic003G133900--Sobic002G083500 Sobic001G398800 Sobic001G398800 Sobic003G133900--Sobic001G398800 Sobic003G133900--Sobic007G183900 Sobic005G172500 Sobic005G172500 Sobic003G133900--Sobic005G172500 Sobic003G133900--Sobic006G210000 Sobic004G200200 Sobic004G200200 Sobic003G133900--Sobic004G200200 Sobic007G071200 Sobic007G071200 Sobic003G133900--Sobic007G071200 Sobic007G183900--Sobic003G416700 Sobic006G118700 Sobic006G118700 Sobic007G183900--Sobic006G118700 Sobic003G360400 Sobic003G360400 Sobic007G183900--Sobic003G360400 Sobic010G236400 Sobic010G236400 Sobic007G183900--Sobic010G236400 Sobic009G044800 Sobic009G044800 Sobic007G183900--Sobic009G044800 Sobic010G069100 Sobic010G069100 Sobic007G183900--Sobic010G069100 Sobic010G275500 Sobic010G275500 Sobic007G183900--Sobic010G275500 Sobic001G354600 Sobic001G354600 Sobic007G183900--Sobic001G354600 Sobic002G264200 Sobic002G264200 Sobic007G183900--Sobic002G264200 Sobic006G224800 Sobic006G224800 Sobic003G062300--Sobic006G224800 Sobic003G062300--Sobic004G309900 Sobic002G145800 Sobic002G145800 Sobic003G062300--Sobic002G145800 Sobic003G062300--Sobic003G416700 Sobic005G220000 Sobic005G220000 Sobic003G062300--Sobic005G220000 Sobic001G051700 Sobic001G051700 Sobic003G062300--Sobic001G051700 Sobic002G164200 Sobic002G164200 Sobic003G062300--Sobic002G164200 Sobic003G214600 Sobic003G214600 Sobic003G062300--Sobic003G214600 Sobic007G183300 Sobic007G183300 Sobic003G062300--Sobic007G183300 Sobic009G084900 Sobic009G084900 Sobic006G077200--Sobic009G084900 Sobic010G185400 Sobic010G185400 Sobic006G077200--Sobic010G185400 Sobic010G059500 Sobic010G059500 Sobic006G077200--Sobic010G059500 Sobic001G145400 Sobic001G145400 Sobic006G077200--Sobic001G145400 Sobic006G077200--Sobic001G493200 Sobic003G249600 Sobic003G249600 Sobic006G077200--Sobic003G249600 Sobic008G082500 Sobic008G082500 Sobic006G077200--Sobic008G082500 Sobic003G189600 Sobic003G189600 Sobic006G077200--Sobic003G189600 Sobic006G077200--Sobic004G096400 Sobic006G234700 Sobic006G234700 Sobic004G096400--Sobic006G234700 Sobic009G192300 Sobic009G192300 Sobic004G096400--Sobic009G192300 Sobic004G096400--Sobic010G059500 Sobic004G096400--Sobic001G493200 Sobic004G096400--Sobic009G084900 Sobic001G433800 Sobic001G433800 Sobic004G096400--Sobic001G433800 Sobic004G096400--Sobic003G249600 Sobic004G096400--Sobic006G077200 Sobic007G132100 Sobic007G132100 Sobic004G096400--Sobic007G132100 Sobic003G408600 Sobic003G408600 Sobic002G366400--Sobic003G408600 Sobic010G112100 Sobic010G112100 Sobic002G366400--Sobic010G112100 Sobic007G159900 Sobic007G159900 Sobic002G366400--Sobic007G159900 Sobic002G366400--Sobic006G118700 Sobic002G366400--Sobic003G360400 Sobic002G045600 Sobic002G045600 Sobic002G366400--Sobic002G045600 Sobic002G366400--Sobic007G183900 Sobic003G266001 Sobic003G266001 Sobic002G366400--Sobic003G266001 Sobic002G366400--Sobic001G354600 Sobic010G001100 Sobic010G001100 Sobic006G210000--Sobic010G001100 Sobic003G293200 Sobic003G293200 Sobic006G210000--Sobic003G293200 Sobic004G156500 Sobic004G156500 Sobic006G210000--Sobic004G156500 Sobic010G065300 Sobic010G065300 Sobic006G210000--Sobic010G065300 Sobic004G355800 Sobic004G355800 Sobic006G210000--Sobic004G355800 Sobic007G031600 Sobic007G031600 Sobic006G210000--Sobic007G031600 Sobic008G100100 Sobic008G100100 Sobic006G210000--Sobic008G100100 Sobic006G052300 Sobic006G052300 Sobic006G210000--Sobic006G052300 Sobic005G191900 Sobic005G191900 Sobic006G210000--Sobic005G191900 Sobic002G154000 Sobic002G154000 Sobic003G416700--Sobic002G154000 Sobic003G416700--Sobic002G264200 Sobic001G461400 Sobic001G461400 Sobic003G416700--Sobic001G461400 Sobic003G416700--Sobic007G183900 Sobic003G416700--Sobic001G051700 Sobic003G416700--Sobic003G360400 Sobic009G119000 Sobic009G119000 Sobic003G416700--Sobic009G119000 Sobic001G063700 Sobic001G063700 Sobic003G416700--Sobic001G063700 Sobic003G416700--Sobic010G275500 Sobic001G008200--Sobic004G309900 Sobic001G008200--Sobic005G172500 Sobic001G227400 Sobic001G227400 Sobic001G008200--Sobic001G227400 Sobic001G008200--Sobic001G493200 Sobic001G008200--Sobic003G133900 Sobic006G240100 Sobic006G240100 Sobic001G008200--Sobic006G240100 Sobic004G155600 Sobic004G155600 Sobic001G008200--Sobic004G155600 Sobic001G473600 Sobic001G473600 Sobic001G008200--Sobic001G473600 Sobic001G008200--Sobic001G145400
Octagon: transcription factors


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