Gene annotation
Transcriptome id Sobic.010G001100.1
Synonym MOM1, MOM
Functional annotation chromo domain containing protein, expressed
UniProt A0A194YGK5
Pfam PF00176
Panther DB PTHR10799 PTHR10799:SF620
NCBI CDD KOG0383; Predicted helicase
KEGG Orthology -
Gene Ontology GO:0005524; ATP binding


Orthologs (automatic annotation)
TAIR AT1G08060 : ATP-dependent helicase family protein
RAP-DB (Rice) LOC_Os06g01320.1 : chromo domain containing protein, expressed
MaizeGDB (Corn) Zm00025a050361
Brachypodium KQJ86790 , PNT66056 , PNT62752 , KQJ86789
Barley HORVU7Hr1G120510.21 , HORVU7Hr1G120510.20 , HORVU7Hr1G120510.22 , HORVU7Hr1G120510.18 , HORVU7Hr1G120510.19 , HORVU7Hr1G120510.14 , HORVU7Hr1G120510.15 , HORVU7Hr1G120510.16 , HORVU7Hr1G120510.17 , HORVU7Hr1G120510.10 , HORVU7Hr1G120510.11 , HORVU7Hr1G120510.12 , HORVU7Hr1G120510.13 , HORVU7Hr1G120510.6 , HORVU7Hr1G120510.7 , HORVU7Hr1G120510.4 , HORVU7Hr1G120510.5 , HORVU7Hr1G120510.3 , HORVU7Hr1G120510.1 , HORVU7Hr1G120510.8 , HORVU7Hr1G120510.9
Wheat TraesCS5D02G373500 , TraesCS5B02G537700 , TraesCS5A02G365500 , TraesCS5B02G367100 , TraesCS5B02G367100
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G065300 expressed protein K11643: CHD4, chromodomain-helicase-DNA-binding protein 4
2 Sobic.004G048800 - K12599: SKI2, antiviral helicase SKI2
3 Sobic.002G396500 FAT domain-containing protein, putative, expressed K08874: transformation/transcription domain-associated protein
4 Sobic.003G293200 plus-3 domain containing protein, expressed -
5 Sobic.004G242400 nuclear-pore anchor, putative, expressed K09291: TPR, MLP1, nucleoprotein TPR
6 Sobic.009G109200 phosphatidylinositol kinase, putative, expressed K07203: MTOR, FRAP, serine/threonine-protein kinase mTOR
7 Sobic.002G154000 EDM2, putative, expressed -
8 Sobic.001G352900 intron-binding protein aquarius, putative, expressed K12874: intron-binding protein aquarius
9 Sobic.009G256300 DNA binding protein, putative, expressed -
10 Sobic.010G112100 transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
11 Sobic.003G360400 ulp1 protease family protein, putative, expressed K08596: sentrin-specific protease 7
12 Sobic.004G009600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
13 Sobic.001G134300 - K17613: calcineurin-binding protein cabin-1
14 Sobic.001G363500 DIRP family protein, putative, expressed -
15 Sobic.008G098300 ubiquitin carboxyl-terminal hydrolase 26, putative, expressed K11858: ubiquitin carboxyl-terminal hydrolase 48
16 Sobic.001G219900 expressed protein -
17 Sobic.001G398800 FHA domain containing protein, putative, expressed -
18 Sobic.007G062800 SET domain containing protein, expressed -
19 Sobic.002G397500 SAC3/GANP family protein, expressed -
20 Sobic.006G210000 zinc finger domain, LSD1 subclass family protein, expressed -


Gene co-expression network
sample Sobic010G001100 Sobic010G001100 Sobic010G065300 Sobic010G065300 Sobic010G001100--Sobic010G065300 Sobic004G048800 Sobic004G048800 Sobic010G001100--Sobic004G048800 Sobic002G396500 Sobic002G396500 Sobic010G001100--Sobic002G396500 Sobic003G293200 Sobic003G293200 Sobic010G001100--Sobic003G293200 Sobic004G242400 Sobic004G242400 Sobic010G001100--Sobic004G242400 Sobic009G109200 Sobic009G109200 Sobic010G001100--Sobic009G109200 Sobic002G154000 Sobic002G154000 Sobic010G001100--Sobic002G154000 Sobic001G352900 Sobic001G352900 Sobic010G001100--Sobic001G352900 Sobic009G256300 Sobic009G256300 Sobic010G001100--Sobic009G256300 Sobic010G065300--Sobic010G001100 Sobic008G009700 Sobic008G009700 Sobic010G065300--Sobic008G009700 Sobic002G153700 Sobic002G153700 Sobic010G065300--Sobic002G153700 Sobic001G306900 Sobic001G306900 Sobic010G065300--Sobic001G306900 Sobic001G134300 Sobic001G134300 Sobic010G065300--Sobic001G134300 Sobic010G065300--Sobic003G293200 Sobic009G119000 Sobic009G119000 Sobic010G065300--Sobic009G119000 Sobic004G156500 Sobic004G156500 Sobic010G065300--Sobic004G156500 Sobic010G065300--Sobic004G048800 Sobic008G098300 Sobic008G098300 Sobic004G048800--Sobic008G098300 Sobic001G398800 Sobic001G398800 Sobic004G048800--Sobic001G398800 Sobic004G048800--Sobic004G242400 Sobic004G048800--Sobic010G001100 Sobic003G360400 Sobic003G360400 Sobic004G048800--Sobic003G360400 Sobic001G363500 Sobic001G363500 Sobic004G048800--Sobic001G363500 Sobic002G317200 Sobic002G317200 Sobic004G048800--Sobic002G317200 Sobic001G433800 Sobic001G433800 Sobic004G048800--Sobic001G433800 Sobic005G112300 Sobic005G112300 Sobic004G048800--Sobic005G112300 Sobic007G098500 Sobic007G098500 Sobic002G396500--Sobic007G098500 Sobic002G396500--Sobic010G001100 Sobic010G105200 Sobic010G105200 Sobic002G396500--Sobic010G105200 Sobic003G072200 Sobic003G072200 Sobic002G396500--Sobic003G072200 Sobic008G092600 Sobic008G092600 Sobic002G396500--Sobic008G092600 Sobic001G137000 Sobic001G137000 Sobic002G396500--Sobic001G137000 Sobic003G233400 Sobic003G233400 Sobic002G396500--Sobic003G233400 Sobic003G312100 Sobic003G312100 Sobic002G396500--Sobic003G312100 Sobic002G396500--Sobic009G109200 Sobic003G293200--Sobic010G001100 Sobic009G166100 Sobic009G166100 Sobic003G293200--Sobic009G166100 Sobic005G128400 Sobic005G128400 Sobic003G293200--Sobic005G128400 Sobic004G009600 Sobic004G009600 Sobic003G293200--Sobic004G009600 Sobic003G293200--Sobic010G065300 Sobic004G264300 Sobic004G264300 Sobic003G293200--Sobic004G264300 Sobic007G031600 Sobic007G031600 Sobic003G293200--Sobic007G031600 Sobic007G117400 Sobic007G117400 Sobic003G293200--Sobic007G117400 Sobic001G111600 Sobic001G111600 Sobic003G293200--Sobic001G111600 Sobic007G062800 Sobic007G062800 Sobic004G242400--Sobic007G062800 Sobic004G242400--Sobic009G109200 Sobic004G242400--Sobic010G105200 Sobic004G276400 Sobic004G276400 Sobic004G242400--Sobic004G276400 Sobic010G010700 Sobic010G010700 Sobic004G242400--Sobic010G010700 Sobic010G112100 Sobic010G112100 Sobic004G242400--Sobic010G112100 Sobic004G314000 Sobic004G314000 Sobic004G242400--Sobic004G314000 Sobic004G242400--Sobic009G256300 Sobic004G242400--Sobic001G433800 Sobic009G109200--Sobic010G105200 Sobic009G109200--Sobic004G242400 Sobic002G397500 Sobic002G397500 Sobic009G109200--Sobic002G397500 Sobic001G542400 Sobic001G542400 Sobic009G109200--Sobic001G542400 Sobic001G540400 Sobic001G540400 Sobic009G109200--Sobic001G540400 Sobic005G008800 Sobic005G008800 Sobic009G109200--Sobic005G008800 Sobic009G109200--Sobic004G276400 Sobic003G408600 Sobic003G408600 Sobic009G109200--Sobic003G408600 Sobic009G109200--Sobic010G112100 Sobic002G154000--Sobic003G360400 Sobic003G416700 Sobic003G416700 Sobic002G154000--Sobic003G416700 Sobic002G154000--Sobic010G112100 Sobic001G063700 Sobic001G063700 Sobic002G154000--Sobic001G063700 Sobic002G154000--Sobic010G001100 Sobic001G461400 Sobic001G461400 Sobic002G154000--Sobic001G461400 Sobic002G154000--Sobic001G433800 Sobic002G154000--Sobic004G048800 Sobic007G063000 Sobic007G063000 Sobic002G154000--Sobic007G063000 Sobic010G053600 Sobic010G053600 Sobic001G352900--Sobic010G053600 Sobic002G391600 Sobic002G391600 Sobic001G352900--Sobic002G391600 Sobic001G352900--Sobic004G242400 Sobic001G352900--Sobic010G001100 Sobic001G352900--Sobic009G109200 Sobic001G352900--Sobic002G317200 Sobic001G352900--Sobic002G397500 Sobic001G219600 Sobic001G219600 Sobic001G352900--Sobic001G219600 Sobic001G352900--Sobic003G293200 Sobic009G256300--Sobic010G112100 Sobic003G389200 Sobic003G389200 Sobic009G256300--Sobic003G389200 Sobic009G256300--Sobic004G242400 Sobic009G256300--Sobic010G010700 Sobic010G123600 Sobic010G123600 Sobic009G256300--Sobic010G123600 Sobic009G256300--Sobic003G360400 Sobic009G256300--Sobic009G109200 Sobic009G256300--Sobic004G276400 Sobic009G256300--Sobic001G542400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.