Gene annotation
Transcriptome id Sobic.004G009600.1
Synonym BRM, ATBRM, CHA2, Sb04g001010, CHR2
Functional annotation expressed protein
UniProt A0A1Z5RKU0
Pfam PF04851 PF08880 PF00271
Panther DB PTHR10799 PTHR10799:SF577
NCBI CDD -
KEGG Orthology K11647; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
Gene Ontology GO:0016787; hydrolase activity GO:0005524ATP binding GO:0003677DNA binding GO:0006355regulation of transcription, DNA-templated GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT2G46020 : transcription regulatory protein SNF2, putative
RAP-DB (Rice) LOC_Os02g02290.1 : SNF2 family N-terminal domain containing protein, expressed
MaizeGDB (Corn) Zm00025a018690
Brachypodium KQJ92873
Barley HORVU6Hr1G006050.15 , HORVU6Hr1G006050.14 , HORVU6Hr1G006050.17 , HORVU6Hr1G006050.16 , HORVU6Hr1G006050.11 , HORVU6Hr1G006050.10 , HORVU6Hr1G006050.13 , HORVU6Hr1G006050.12 , HORVU6Hr1G006050.1 , HORVU6Hr1G006050.3 , HORVU6Hr1G006050.2 , HORVU6Hr1G006050.5 , HORVU6Hr1G006050.4 , HORVU6Hr1G006050.6 , HORVU6Hr1G006050.9 , HORVU6Hr1G006050.8
Wheat TraesCS6D02G039800 , TraesCS6A02G034200 , TraesCS6A02G034200 , TraesCS6B02G048200 , TraesCS6B02G048200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G040600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
2 Sobic.008G028700 SET domain containing protein, expressed -
3 Sobic.009G260500 tetratricopeptide repeat containing protein, putative, expressed K14408: CSTF3, cleavage stimulation factor subunit 3
4 Sobic.010G279450 - K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
5 Sobic.002G309600 DNA-binding protein, putative, expressed K14326: UPF1, regulator of nonsense transcripts 1
6 Sobic.007G117400 expressed protein -
7 Sobic.003G293200 plus-3 domain containing protein, expressed -
8 Sobic.001G363500 DIRP family protein, putative, expressed -
9 Sobic.010G277500 expressed protein -
10 Sobic.008G009700 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
11 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
12 Sobic.001G154900 "GL3.1/qGL3(Ortholog in rice:Qi et al., 2012, Zhang et al., 2012)"(PubMedID : 31659834)@serine/threonine protein phosphatase, putative, expressed -
13 Sobic.003G280800 RNA recognition motif family protein, expressed K13094: RNA-binding protein 5/10
14 Sobic.004G314000 expressed protein -
15 Sobic.004G208900 RNA-binding protein Luc7-like, putative, expressed -
16 Sobic.009G024000 nuclear factor related to kappa-B-binding protein, related, putative, expressed K11671: NFRKB, nuclear factor related to kappa-B-binding protein
17 Sobic.004G242400 nuclear-pore anchor, putative, expressed K09291: TPR, MLP1, nucleoprotein TPR
18 Sobic.001G241200 protein kinase domain containing protein, expressed -
19 Sobic.010G065300 expressed protein K11643: CHD4, chromodomain-helicase-DNA-binding protein 4
20 Sobic.009G166100 PWWP domain containing protein, expressed -


Gene co-expression network
sample Sobic004G009600 Sobic004G009600 Sobic009G040600 Sobic009G040600 Sobic004G009600--Sobic009G040600 Sobic008G028700 Sobic008G028700 Sobic004G009600--Sobic008G028700 Sobic009G260500 Sobic009G260500 Sobic004G009600--Sobic009G260500 Sobic010G279450 Sobic010G279450 Sobic004G009600--Sobic010G279450 Sobic002G309600 Sobic002G309600 Sobic004G009600--Sobic002G309600 Sobic007G117400 Sobic007G117400 Sobic004G009600--Sobic007G117400 Sobic003G293200 Sobic003G293200 Sobic004G009600--Sobic003G293200 Sobic001G363500 Sobic001G363500 Sobic004G009600--Sobic001G363500 Sobic010G277500 Sobic010G277500 Sobic004G009600--Sobic010G277500 Sobic009G040600--Sobic004G009600 Sobic002G006900 Sobic002G006900 Sobic009G040600--Sobic002G006900 Sobic008G047800 Sobic008G047800 Sobic009G040600--Sobic008G047800 Sobic004G208900 Sobic004G208900 Sobic009G040600--Sobic004G208900 Sobic005G112300 Sobic005G112300 Sobic009G040600--Sobic005G112300 Sobic007G065400 Sobic007G065400 Sobic009G040600--Sobic007G065400 Sobic009G040600--Sobic008G028700 Sobic009G040600--Sobic002G309600 Sobic009G126400 Sobic009G126400 Sobic009G040600--Sobic009G126400 Sobic008G028700--Sobic010G279450 Sobic008G028700--Sobic009G040600 Sobic008G028700--Sobic004G009600 Sobic004G258700 Sobic004G258700 Sobic008G028700--Sobic004G258700 Sobic008G028700--Sobic007G065400 Sobic010G139000 Sobic010G139000 Sobic008G028700--Sobic010G139000 Sobic008G028700--Sobic002G006900 Sobic002G145101 Sobic002G145101 Sobic008G028700--Sobic002G145101 Sobic008G113100 Sobic008G113100 Sobic008G028700--Sobic008G113100 Sobic001G219600 Sobic001G219600 Sobic009G260500--Sobic001G219600 Sobic009G260500--Sobic004G009600 Sobic009G260500--Sobic010G277500 Sobic008G009700 Sobic008G009700 Sobic009G260500--Sobic008G009700 Sobic009G260500--Sobic010G139000 Sobic009G260500--Sobic008G028700 Sobic009G260500--Sobic009G040600 Sobic009G260500--Sobic002G309600 Sobic001G311500 Sobic001G311500 Sobic009G260500--Sobic001G311500 Sobic010G279450--Sobic005G112300 Sobic010G279450--Sobic010G139000 Sobic002G405800 Sobic002G405800 Sobic010G279450--Sobic002G405800 Sobic004G314000 Sobic004G314000 Sobic010G279450--Sobic004G314000 Sobic003G059750 Sobic003G059750 Sobic010G279450--Sobic003G059750 Sobic010G279450--Sobic008G028700 Sobic010G279450--Sobic001G363500 Sobic010G279450--Sobic004G009600 Sobic010G247800 Sobic010G247800 Sobic010G279450--Sobic010G247800 Sobic003G280800 Sobic003G280800 Sobic002G309600--Sobic003G280800 Sobic002G134200 Sobic002G134200 Sobic002G309600--Sobic002G134200 Sobic002G309600--Sobic007G117400 Sobic002G309600--Sobic008G009700 Sobic001G071400 Sobic001G071400 Sobic002G309600--Sobic001G071400 Sobic002G309600--Sobic005G112300 Sobic004G065100 Sobic004G065100 Sobic002G309600--Sobic004G065100 Sobic001G154900 Sobic001G154900 Sobic002G309600--Sobic001G154900 Sobic002G309600--Sobic002G006900 Sobic007G117400--Sobic002G309600 Sobic001G241200 Sobic001G241200 Sobic007G117400--Sobic001G241200 Sobic007G117400--Sobic004G065100 Sobic007G161000 Sobic007G161000 Sobic007G117400--Sobic007G161000 Sobic007G117400--Sobic003G280800 Sobic007G117400--Sobic004G009600 Sobic007G117400--Sobic001G154900 Sobic007G117400--Sobic009G040600 Sobic005G008800 Sobic005G008800 Sobic007G117400--Sobic005G008800 Sobic010G001100 Sobic010G001100 Sobic003G293200--Sobic010G001100 Sobic009G166100 Sobic009G166100 Sobic003G293200--Sobic009G166100 Sobic005G128400 Sobic005G128400 Sobic003G293200--Sobic005G128400 Sobic003G293200--Sobic004G009600 Sobic010G065300 Sobic010G065300 Sobic003G293200--Sobic010G065300 Sobic004G264300 Sobic004G264300 Sobic003G293200--Sobic004G264300 Sobic007G031600 Sobic007G031600 Sobic003G293200--Sobic007G031600 Sobic003G293200--Sobic007G117400 Sobic001G111600 Sobic001G111600 Sobic003G293200--Sobic001G111600 Sobic001G363500--Sobic005G112300 Sobic007G062800 Sobic007G062800 Sobic001G363500--Sobic007G062800 Sobic001G363500--Sobic010G247800 Sobic002G299700 Sobic002G299700 Sobic001G363500--Sobic002G299700 Sobic010G112100 Sobic010G112100 Sobic001G363500--Sobic010G112100 Sobic004G242400 Sobic004G242400 Sobic001G363500--Sobic004G242400 Sobic001G433800 Sobic001G433800 Sobic001G363500--Sobic001G433800 Sobic001G363500--Sobic010G279450 Sobic001G363500--Sobic010G139000 Sobic010G277500--Sobic004G208900 Sobic006G209850 Sobic006G209850 Sobic010G277500--Sobic006G209850 Sobic010G277500--Sobic007G065400 Sobic010G277500--Sobic009G260500 Sobic010G277500--Sobic003G280800 Sobic010G277500--Sobic004G009600 Sobic010G277500--Sobic008G028700 Sobic010G277500--Sobic004G258700 Sobic006G216800 Sobic006G216800 Sobic010G277500--Sobic006G216800
Octagon: transcription factors


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