Gene annotation
Transcriptome id Sobic.010G065300.1
Synonym Sb10g005630, CHR6, PKL, SSL2, CHD3, GYM
Functional annotation expressed protein
UniProt A0A194YHQ5
Pfam PF04851 PF06465 PF00271 PF00385 PF06461
Panther DB PTHR10799 PTHR10799:SF741
NCBI CDD -
KEGG Orthology K11643; CHD4, chromodomain-helicase-DNA-binding protein 4
Gene Ontology GO:0016787; hydrolase activity GO:0005524ATP binding GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT2G25170 : chromatin remodeling factor CHD3 (PICKLE)
RAP-DB (Rice) LOC_Os06g08480.1 : CHD3-type chromatin-remodeling factor PICKLE, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK19283
Barley -
Wheat TraesCS7A02G147100 , TraesCS7A02G147100 , TraesCS7A02G147100 , TraesCS7A02G147100 , TraesCS7A02G147100 , TraesCS7A02G147100 , TraesCS7A02G147100 , TraesCS7B02G050100 , TraesCS7B02G050100 , TraesCS7B02G050100 , TraesCS7B02G050100 , TraesCS7B02G050100 , TraesCS7B02G050100 , TraesCS7D02G148900 , TraesCS7D02G148900 , TraesCS7D02G148900 , TraesCS7D02G148900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G001100 chromo domain containing protein, expressed -
2 Sobic.008G009700 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
3 Sobic.002G153700 SWP, putative, expressed K15156: MED14, mediator of RNA polymerase II transcription subunit 14
4 Sobic.001G306900 tetratricopeptide repeat domain containing protein, expressed K12600: SKI3, superkiller protein 3
5 Sobic.001G134300 - K17613: calcineurin-binding protein cabin-1
6 Sobic.003G293200 plus-3 domain containing protein, expressed -
7 Sobic.009G119000 tetratricopeptide repeat containing protein, putative, expressed K09527: DnaJ homolog subfamily C member 7
8 Sobic.004G156500 expressed protein -
9 Sobic.004G048800 - K12599: SKI2, antiviral helicase SKI2
10 Sobic.004G009600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
11 Sobic.002G071500 cleavage and polyadenylation specificity factor, putative, expressed K12830: SF3B3, SAP130, splicing factor 3B subunit 3
12 Sobic.001G511500 RNA recognition motif containing protein, putative, expressed K12837: splicing factor U2AF 65 kDa subunit
13 Sobic.010G201500 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
14 Sobic.001G542700 expressed protein -
15 Sobic.001G241200 protein kinase domain containing protein, expressed -
16 Sobic.007G065400 expressed protein K14400: pre-mRNA cleavage complex 2 protein Pcf11
17 Sobic.004G145500 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
18 Sobic.001G311500 N-acetylglucosaminyl transferase component, putative, expressed K03860: PIGQ, phosphatidylinositol N-acetylglucosaminyltransferase subunit Q
19 Sobic.001G398800 FHA domain containing protein, putative, expressed -
20 Sobic.002G154000 EDM2, putative, expressed -


Gene co-expression network
sample Sobic010G065300 Sobic010G065300 Sobic010G001100 Sobic010G001100 Sobic010G065300--Sobic010G001100 Sobic008G009700 Sobic008G009700 Sobic010G065300--Sobic008G009700 Sobic002G153700 Sobic002G153700 Sobic010G065300--Sobic002G153700 Sobic001G306900 Sobic001G306900 Sobic010G065300--Sobic001G306900 Sobic001G134300 Sobic001G134300 Sobic010G065300--Sobic001G134300 Sobic003G293200 Sobic003G293200 Sobic010G065300--Sobic003G293200 Sobic009G119000 Sobic009G119000 Sobic010G065300--Sobic009G119000 Sobic004G156500 Sobic004G156500 Sobic010G065300--Sobic004G156500 Sobic004G048800 Sobic004G048800 Sobic010G065300--Sobic004G048800 Sobic010G001100--Sobic010G065300 Sobic010G001100--Sobic004G048800 Sobic002G396500 Sobic002G396500 Sobic010G001100--Sobic002G396500 Sobic010G001100--Sobic003G293200 Sobic004G242400 Sobic004G242400 Sobic010G001100--Sobic004G242400 Sobic009G109200 Sobic009G109200 Sobic010G001100--Sobic009G109200 Sobic002G154000 Sobic002G154000 Sobic010G001100--Sobic002G154000 Sobic001G352900 Sobic001G352900 Sobic010G001100--Sobic001G352900 Sobic009G256300 Sobic009G256300 Sobic010G001100--Sobic009G256300 Sobic002G309600 Sobic002G309600 Sobic008G009700--Sobic002G309600 Sobic005G008800 Sobic005G008800 Sobic008G009700--Sobic005G008800 Sobic005G112300 Sobic005G112300 Sobic008G009700--Sobic005G112300 Sobic007G065400 Sobic007G065400 Sobic008G009700--Sobic007G065400 Sobic002G071500 Sobic002G071500 Sobic008G009700--Sobic002G071500 Sobic010G002100 Sobic010G002100 Sobic008G009700--Sobic010G002100 Sobic008G009700--Sobic002G153700 Sobic008G009700--Sobic010G065300 Sobic001G241200 Sobic001G241200 Sobic008G009700--Sobic001G241200 Sobic002G153700--Sobic002G071500 Sobic005G207500 Sobic005G207500 Sobic002G153700--Sobic005G207500 Sobic002G153700--Sobic008G009700 Sobic002G153700--Sobic010G065300 Sobic002G153700--Sobic009G119000 Sobic003G307000 Sobic003G307000 Sobic002G153700--Sobic003G307000 Sobic002G264200 Sobic002G264200 Sobic002G153700--Sobic002G264200 Sobic010G069100 Sobic010G069100 Sobic002G153700--Sobic010G069100 Sobic002G153700--Sobic001G306900 Sobic004G138000 Sobic004G138000 Sobic001G306900--Sobic004G138000 Sobic001G306900--Sobic010G065300 Sobic001G303675 Sobic001G303675 Sobic001G306900--Sobic001G303675 Sobic001G306900--Sobic007G065400 Sobic001G511500 Sobic001G511500 Sobic001G306900--Sobic001G511500 Sobic004G145500 Sobic004G145500 Sobic001G306900--Sobic004G145500 Sobic001G306900--Sobic002G153700 Sobic006G013500 Sobic006G013500 Sobic001G306900--Sobic006G013500 Sobic001G094000 Sobic001G094000 Sobic001G306900--Sobic001G094000 Sobic001G134300--Sobic010G065300 Sobic001G134300--Sobic001G306900 Sobic001G134300--Sobic010G001100 Sobic001G134300--Sobic004G156500 Sobic004G086200 Sobic004G086200 Sobic001G134300--Sobic004G086200 Sobic001G398800 Sobic001G398800 Sobic001G134300--Sobic001G398800 Sobic001G090800 Sobic001G090800 Sobic001G134300--Sobic001G090800 Sobic001G346900 Sobic001G346900 Sobic001G134300--Sobic001G346900 Sobic001G134300--Sobic002G153700 Sobic003G293200--Sobic010G001100 Sobic009G166100 Sobic009G166100 Sobic003G293200--Sobic009G166100 Sobic005G128400 Sobic005G128400 Sobic003G293200--Sobic005G128400 Sobic004G009600 Sobic004G009600 Sobic003G293200--Sobic004G009600 Sobic003G293200--Sobic010G065300 Sobic004G264300 Sobic004G264300 Sobic003G293200--Sobic004G264300 Sobic007G031600 Sobic007G031600 Sobic003G293200--Sobic007G031600 Sobic007G117400 Sobic007G117400 Sobic003G293200--Sobic007G117400 Sobic001G111600 Sobic001G111600 Sobic003G293200--Sobic001G111600 Sobic009G119000--Sobic002G153700 Sobic003G059750 Sobic003G059750 Sobic009G119000--Sobic003G059750 Sobic009G119000--Sobic002G071500 Sobic009G119000--Sobic010G065300 Sobic008G153000 Sobic008G153000 Sobic009G119000--Sobic008G153000 Sobic010G275500 Sobic010G275500 Sobic009G119000--Sobic010G275500 Sobic003G416700 Sobic003G416700 Sobic009G119000--Sobic003G416700 Sobic009G119000--Sobic004G048800 Sobic001G311500 Sobic001G311500 Sobic009G119000--Sobic001G311500 Sobic008G100100 Sobic008G100100 Sobic004G156500--Sobic008G100100 Sobic004G156500--Sobic010G065300 Sobic004G156500--Sobic001G134300 Sobic004G156500--Sobic001G306900 Sobic006G118700 Sobic006G118700 Sobic004G156500--Sobic006G118700 Sobic006G210000 Sobic006G210000 Sobic004G156500--Sobic006G210000 Sobic004G156500--Sobic003G416700 Sobic002G357100 Sobic002G357100 Sobic004G156500--Sobic002G357100 Sobic002G259800 Sobic002G259800 Sobic004G156500--Sobic002G259800 Sobic008G098300 Sobic008G098300 Sobic004G048800--Sobic008G098300 Sobic004G048800--Sobic001G398800 Sobic004G048800--Sobic004G242400 Sobic004G048800--Sobic010G001100 Sobic003G360400 Sobic003G360400 Sobic004G048800--Sobic003G360400 Sobic001G363500 Sobic001G363500 Sobic004G048800--Sobic001G363500 Sobic002G317200 Sobic002G317200 Sobic004G048800--Sobic002G317200 Sobic001G433800 Sobic001G433800 Sobic004G048800--Sobic001G433800 Sobic004G048800--Sobic005G112300
Octagon: transcription factors


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