Gene annotation
Transcriptome id Sobic.001G542700.1
Synonym Sb01g050500
Functional annotation expressed protein
UniProt A0A1B6QRA1
Pfam PF08642
Panther DB -
NCBI CDD KOG4843; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G08450 : -
RAP-DB (Rice) LOC_Os07g29450.1 : expressed protein
MaizeGDB (Corn) Zm00025a030966 , Zm00025a015116
Brachypodium KQK15081
Barley HORVU3Hr1G023810.30 , HORVU3Hr1G023810.28 , HORVU3Hr1G023810.29 , HORVU3Hr1G023810.20 , HORVU3Hr1G023810.21 , HORVU3Hr1G023810.22 , HORVU3Hr1G023810.23 , HORVU3Hr1G023810.24 , HORVU3Hr1G023810.25 , HORVU3Hr1G023810.26 , HORVU3Hr1G023810.27 , HORVU3Hr1G023810.19 , HORVU3Hr1G023810.18 , HORVU3Hr1G023810.15 , HORVU3Hr1G023810.14 , HORVU3Hr1G023810.17 , HORVU3Hr1G023810.16 , HORVU3Hr1G023810.11 , HORVU3Hr1G023810.10 , HORVU3Hr1G023810.13 , HORVU3Hr1G023810.12 , HORVU3Hr1G023810.9 , HORVU3Hr1G023810.8 , HORVU3Hr1G023810.1 , HORVU3Hr1G023810.3 , HORVU3Hr1G023810.2 , HORVU3Hr1G023810.5 , HORVU3Hr1G023810.4 , HORVU3Hr1G023810.7 , HORVU3Hr1G023810.6
Wheat TraesCS3B02G146600 , TraesCS3B02G146600 , TraesCS3B02G146600 , TraesCS3D02G128600 , TraesCS3D02G128600 , TraesCS3A02G127400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G009600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
2 Sobic.010G065300 expressed protein K11643: CHD4, chromodomain-helicase-DNA-binding protein 4
3 Sobic.001G241200 protein kinase domain containing protein, expressed -
4 Sobic.002G299700 ATGRIP/GRIP, putative, expressed -
5 Sobic.007G117400 expressed protein -
6 Sobic.003G293200 plus-3 domain containing protein, expressed -
7 Sobic.009G040600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
8 Sobic.007G061700 vacuolar protein sorting-associated protein 18, putative, expressed -
9 Sobic.010G209400 WD domain, G-beta repeat domain containing protein, expressed K03130: transcription initiation factor TFIID subunit 5
10 Sobic.009G166100 PWWP domain containing protein, expressed -
11 Sobic.001G107900 fip1 motif family protein, expressed -
12 Sobic.010G001100 chromo domain containing protein, expressed -
13 Sobic.004G314000 expressed protein -
14 Sobic.004G048800 - K12599: SKI2, antiviral helicase SKI2
15 Sobic.001G138400 crooked neck, putative, expressed K12869: CRN, CRNKL1, CLF1, crooked neck
16 Sobic.001G363500 DIRP family protein, putative, expressed -
17 Sobic.009G119000 tetratricopeptide repeat containing protein, putative, expressed K09527: DnaJ homolog subfamily C member 7
18 Sobic.002G404700 expressed protein K11367: chromodomain-helicase-DNA-binding protein 1
19 Sobic.001G511500 RNA recognition motif containing protein, putative, expressed K12837: splicing factor U2AF 65 kDa subunit
20 Sobic.002G309600 DNA-binding protein, putative, expressed K14326: UPF1, regulator of nonsense transcripts 1


Gene co-expression network
sample Sobic001G542700 Sobic001G542700 Sobic004G009600 Sobic004G009600 Sobic001G542700--Sobic004G009600 Sobic010G065300 Sobic010G065300 Sobic001G542700--Sobic010G065300 Sobic001G241200 Sobic001G241200 Sobic001G542700--Sobic001G241200 Sobic002G299700 Sobic002G299700 Sobic001G542700--Sobic002G299700 Sobic007G117400 Sobic007G117400 Sobic001G542700--Sobic007G117400 Sobic003G293200 Sobic003G293200 Sobic001G542700--Sobic003G293200 Sobic009G040600 Sobic009G040600 Sobic001G542700--Sobic009G040600 Sobic007G061700 Sobic007G061700 Sobic001G542700--Sobic007G061700 Sobic010G209400 Sobic010G209400 Sobic001G542700--Sobic010G209400 Sobic004G009600--Sobic009G040600 Sobic008G028700 Sobic008G028700 Sobic004G009600--Sobic008G028700 Sobic009G260500 Sobic009G260500 Sobic004G009600--Sobic009G260500 Sobic010G279450 Sobic010G279450 Sobic004G009600--Sobic010G279450 Sobic002G309600 Sobic002G309600 Sobic004G009600--Sobic002G309600 Sobic004G009600--Sobic007G117400 Sobic004G009600--Sobic003G293200 Sobic001G363500 Sobic001G363500 Sobic004G009600--Sobic001G363500 Sobic010G277500 Sobic010G277500 Sobic004G009600--Sobic010G277500 Sobic010G001100 Sobic010G001100 Sobic010G065300--Sobic010G001100 Sobic008G009700 Sobic008G009700 Sobic010G065300--Sobic008G009700 Sobic002G153700 Sobic002G153700 Sobic010G065300--Sobic002G153700 Sobic001G306900 Sobic001G306900 Sobic010G065300--Sobic001G306900 Sobic001G134300 Sobic001G134300 Sobic010G065300--Sobic001G134300 Sobic010G065300--Sobic003G293200 Sobic009G119000 Sobic009G119000 Sobic010G065300--Sobic009G119000 Sobic004G156500 Sobic004G156500 Sobic010G065300--Sobic004G156500 Sobic004G048800 Sobic004G048800 Sobic010G065300--Sobic004G048800 Sobic001G241200--Sobic007G117400 Sobic005G112300 Sobic005G112300 Sobic001G241200--Sobic005G112300 Sobic004G065100 Sobic004G065100 Sobic001G241200--Sobic004G065100 Sobic001G241200--Sobic002G309600 Sobic005G008800 Sobic005G008800 Sobic001G241200--Sobic005G008800 Sobic001G241200--Sobic008G009700 Sobic001G154900 Sobic001G154900 Sobic001G241200--Sobic001G154900 Sobic003G119000 Sobic003G119000 Sobic001G241200--Sobic003G119000 Sobic001G540400 Sobic001G540400 Sobic001G241200--Sobic001G540400 Sobic010G116600 Sobic010G116600 Sobic002G299700--Sobic010G116600 Sobic002G299700--Sobic001G363500 Sobic002G299700--Sobic005G112300 Sobic002G397500 Sobic002G397500 Sobic002G299700--Sobic002G397500 Sobic002G299700--Sobic004G048800 Sobic004G242400 Sobic004G242400 Sobic002G299700--Sobic004G242400 Sobic007G105100 Sobic007G105100 Sobic002G299700--Sobic007G105100 Sobic003G408600 Sobic003G408600 Sobic002G299700--Sobic003G408600 Sobic007G062800 Sobic007G062800 Sobic002G299700--Sobic007G062800 Sobic007G117400--Sobic002G309600 Sobic007G117400--Sobic001G241200 Sobic007G117400--Sobic004G065100 Sobic007G161000 Sobic007G161000 Sobic007G117400--Sobic007G161000 Sobic003G280800 Sobic003G280800 Sobic007G117400--Sobic003G280800 Sobic007G117400--Sobic004G009600 Sobic007G117400--Sobic001G154900 Sobic007G117400--Sobic009G040600 Sobic007G117400--Sobic005G008800 Sobic003G293200--Sobic010G001100 Sobic009G166100 Sobic009G166100 Sobic003G293200--Sobic009G166100 Sobic005G128400 Sobic005G128400 Sobic003G293200--Sobic005G128400 Sobic003G293200--Sobic004G009600 Sobic003G293200--Sobic010G065300 Sobic004G264300 Sobic004G264300 Sobic003G293200--Sobic004G264300 Sobic007G031600 Sobic007G031600 Sobic003G293200--Sobic007G031600 Sobic003G293200--Sobic007G117400 Sobic001G111600 Sobic001G111600 Sobic003G293200--Sobic001G111600 Sobic009G040600--Sobic004G009600 Sobic002G006900 Sobic002G006900 Sobic009G040600--Sobic002G006900 Sobic008G047800 Sobic008G047800 Sobic009G040600--Sobic008G047800 Sobic004G208900 Sobic004G208900 Sobic009G040600--Sobic004G208900 Sobic009G040600--Sobic005G112300 Sobic007G065400 Sobic007G065400 Sobic009G040600--Sobic007G065400 Sobic009G040600--Sobic008G028700 Sobic009G040600--Sobic002G309600 Sobic009G126400 Sobic009G126400 Sobic009G040600--Sobic009G126400 Sobic008G149800 Sobic008G149800 Sobic007G061700--Sobic008G149800 Sobic002G158700 Sobic002G158700 Sobic007G061700--Sobic002G158700 Sobic004G246100 Sobic004G246100 Sobic007G061700--Sobic004G246100 Sobic003G401000 Sobic003G401000 Sobic007G061700--Sobic003G401000 Sobic006G046700 Sobic006G046700 Sobic007G061700--Sobic006G046700 Sobic007G061700--Sobic001G542700 Sobic008G153000 Sobic008G153000 Sobic007G061700--Sobic008G153000 Sobic001G544200 Sobic001G544200 Sobic007G061700--Sobic001G544200 Sobic004G031700 Sobic004G031700 Sobic007G061700--Sobic004G031700 Sobic010G236400 Sobic010G236400 Sobic010G209400--Sobic010G236400 Sobic004G084300 Sobic004G084300 Sobic010G209400--Sobic004G084300 Sobic009G210500 Sobic009G210500 Sobic010G209400--Sobic009G210500 Sobic001G511500 Sobic001G511500 Sobic010G209400--Sobic001G511500 Sobic010G209400--Sobic001G542700 Sobic010G209400--Sobic009G040600 Sobic003G038500 Sobic003G038500 Sobic010G209400--Sobic003G038500 Sobic008G131000 Sobic008G131000 Sobic010G209400--Sobic008G131000 Sobic010G209400--Sobic008G047800
Octagon: transcription factors


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