Gene annotation
Transcriptome id Sobic.001G138400.1
Synonym Sb01g012080
Functional annotation crooked neck, putative, expressed
UniProt C5WPP1
Pfam PF02184
Panther DB PTHR11246 PTHR11246:SF14
NCBI CDD -
KEGG Orthology K12869; CRN, CRNKL1, CLF1, crooked neck
Gene Ontology GO:0006396; RNA processing GO:0005622intracellular


Orthologs (automatic annotation)
TAIR AT5G41770 : crooked neck protein, putative / cell cycle protein, putative
RAP-DB (Rice) LOC_Os05g22260.1 : crooked neck, putative, expressed
MaizeGDB (Corn) Zm00025a007481 , Zm00025a017118
Brachypodium KQK18067
Barley HORVU5Hr1G075030.2 , HORVU5Hr1G075030.1 , HORVU7Hr1G089610.5 , HORVU7Hr1G089610.4 , HORVU7Hr1G089610.3 , HORVU7Hr1G089610.2 , HORVU7Hr1G089610.1
Wheat TraesCS5D02G284700 , TraesCS7B02G276500 , TraesCS5B02G277100 , TraesCS7D02G371400 , TraesCS7A02G351600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G542700 expressed protein -
2 Sobic.003G353600 pumilio-family RNA binding protein, putative, expressed K17943: pumilio RNA-binding family
3 Sobic.002G423200 importin subunit alpha-1b, putative, expressed -
4 Sobic.008G100100 MYB family transcription factor, putative, expressed K12860: CDC5L, CDC5, pre-mRNA-splicing factor CDC5/CEF1
5 Sobic.003G293200 plus-3 domain containing protein, expressed -
6 Sobic.007G031600 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
7 Sobic.005G216300 RNA recognition motif containing protein, expressed K12837: splicing factor U2AF 65 kDa subunit
8 Sobic.009G151200 expressed protein -
9 Sobic.007G061700 vacuolar protein sorting-associated protein 18, putative, expressed -
10 Sobic.003G412300 expressed protein -
11 Sobic.010G209400 WD domain, G-beta repeat domain containing protein, expressed K03130: transcription initiation factor TFIID subunit 5
12 Sobic.005G084100 Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380(PubMedID : 31721651)@inactive receptor kinase At1g27190 precursor, putative, expressed -
13 Sobic.006G210000 zinc finger domain, LSD1 subclass family protein, expressed -
14 Sobic.002G259800 hydroxyproline-rich glycoprotein family protein, putative, expressed -
15 Sobic.006G056000 OsFBL16 - F-box domain and LRR containing protein, expressed -
16 Sobic.007G027700 expressed protein -
17 Sobic.010G065300 expressed protein K11643: CHD4, chromodomain-helicase-DNA-binding protein 4
18 Sobic.003G115100 importin subunit alpha, putative, expressed -
19 Sobic.009G166100 PWWP domain containing protein, expressed -
20 Sobic.004G246100 nicalin, putative, expressed K06171: nicastrin


Gene co-expression network
sample Sobic001G138400 Sobic001G138400 Sobic001G542700 Sobic001G542700 Sobic001G138400--Sobic001G542700 Sobic003G353600 Sobic003G353600 Sobic001G138400--Sobic003G353600 Sobic002G423200 Sobic002G423200 Sobic001G138400--Sobic002G423200 Sobic008G100100 Sobic008G100100 Sobic001G138400--Sobic008G100100 Sobic003G293200 Sobic003G293200 Sobic001G138400--Sobic003G293200 Sobic007G031600 Sobic007G031600 Sobic001G138400--Sobic007G031600 Sobic005G216300 Sobic005G216300 Sobic001G138400--Sobic005G216300 Sobic009G151200 Sobic009G151200 Sobic001G138400--Sobic009G151200 Sobic007G061700 Sobic007G061700 Sobic001G138400--Sobic007G061700 Sobic004G009600 Sobic004G009600 Sobic001G542700--Sobic004G009600 Sobic010G065300 Sobic010G065300 Sobic001G542700--Sobic010G065300 Sobic001G241200 Sobic001G241200 Sobic001G542700--Sobic001G241200 Sobic002G299700 Sobic002G299700 Sobic001G542700--Sobic002G299700 Sobic007G117400 Sobic007G117400 Sobic001G542700--Sobic007G117400 Sobic001G542700--Sobic003G293200 Sobic009G040600 Sobic009G040600 Sobic001G542700--Sobic009G040600 Sobic001G542700--Sobic007G061700 Sobic010G209400 Sobic010G209400 Sobic001G542700--Sobic010G209400 Sobic006G056000 Sobic006G056000 Sobic003G353600--Sobic006G056000 Sobic003G353600--Sobic001G138400 Sobic003G353600--Sobic002G423200 Sobic004G086200 Sobic004G086200 Sobic003G353600--Sobic004G086200 Sobic002G076000 Sobic002G076000 Sobic003G353600--Sobic002G076000 Sobic010G083000 Sobic010G083000 Sobic003G353600--Sobic010G083000 Sobic003G353600--Sobic007G031600 Sobic008G131000 Sobic008G131000 Sobic003G353600--Sobic008G131000 Sobic004G285000 Sobic004G285000 Sobic003G353600--Sobic004G285000 Sobic002G259800 Sobic002G259800 Sobic002G423200--Sobic002G259800 Sobic005G133500 Sobic005G133500 Sobic002G423200--Sobic005G133500 Sobic004G246100 Sobic004G246100 Sobic002G423200--Sobic004G246100 Sobic006G248500 Sobic006G248500 Sobic002G423200--Sobic006G248500 Sobic008G127400 Sobic008G127400 Sobic002G423200--Sobic008G127400 Sobic010G236400 Sobic010G236400 Sobic002G423200--Sobic010G236400 Sobic002G423200--Sobic003G353600 Sobic002G423200--Sobic001G138400 Sobic006G138000 Sobic006G138000 Sobic002G423200--Sobic006G138000 Sobic004G156500 Sobic004G156500 Sobic008G100100--Sobic004G156500 Sobic001G306900 Sobic001G306900 Sobic008G100100--Sobic001G306900 Sobic006G032400 Sobic006G032400 Sobic008G100100--Sobic006G032400 Sobic005G015900 Sobic005G015900 Sobic008G100100--Sobic005G015900 Sobic006G210000 Sobic006G210000 Sobic008G100100--Sobic006G210000 Sobic008G100100--Sobic007G031600 Sobic008G100100--Sobic010G065300 Sobic003G241200 Sobic003G241200 Sobic008G100100--Sobic003G241200 Sobic010G096000 Sobic010G096000 Sobic008G100100--Sobic010G096000 Sobic010G001100 Sobic010G001100 Sobic003G293200--Sobic010G001100 Sobic009G166100 Sobic009G166100 Sobic003G293200--Sobic009G166100 Sobic005G128400 Sobic005G128400 Sobic003G293200--Sobic005G128400 Sobic003G293200--Sobic004G009600 Sobic003G293200--Sobic010G065300 Sobic004G264300 Sobic004G264300 Sobic003G293200--Sobic004G264300 Sobic003G293200--Sobic007G031600 Sobic003G293200--Sobic007G117400 Sobic001G111600 Sobic001G111600 Sobic003G293200--Sobic001G111600 Sobic007G031600--Sobic003G293200 Sobic007G031600--Sobic009G166100 Sobic007G031600--Sobic006G210000 Sobic007G031600--Sobic008G100100 Sobic007G031600--Sobic004G156500 Sobic001G170100 Sobic001G170100 Sobic007G031600--Sobic001G170100 Sobic007G031600--Sobic008G131000 Sobic001G352900 Sobic001G352900 Sobic007G031600--Sobic001G352900 Sobic007G031600--Sobic004G009600 Sobic003G099300 Sobic003G099300 Sobic005G216300--Sobic003G099300 Sobic007G027700 Sobic007G027700 Sobic005G216300--Sobic007G027700 Sobic004G039600 Sobic004G039600 Sobic005G216300--Sobic004G039600 Sobic001G369000 Sobic001G369000 Sobic005G216300--Sobic001G369000 Sobic001G335900 Sobic001G335900 Sobic005G216300--Sobic001G335900 Sobic001G426600 Sobic001G426600 Sobic005G216300--Sobic001G426600 Sobic001G142100 Sobic001G142100 Sobic005G216300--Sobic001G142100 Sobic003G126600 Sobic003G126600 Sobic005G216300--Sobic003G126600 Sobic006G208500 Sobic006G208500 Sobic005G216300--Sobic006G208500 Sobic009G151200--Sobic006G248500 Sobic009G151200--Sobic002G259800 Sobic009G151200--Sobic005G133500 Sobic009G151200--Sobic004G285000 Sobic001G424600 Sobic001G424600 Sobic009G151200--Sobic001G424600 Sobic004G085300 Sobic004G085300 Sobic009G151200--Sobic004G085300 Sobic009G151200--Sobic008G100100 Sobic009G151200--Sobic004G086200 Sobic009G151200--Sobic004G156500 Sobic008G149800 Sobic008G149800 Sobic007G061700--Sobic008G149800 Sobic002G158700 Sobic002G158700 Sobic007G061700--Sobic002G158700 Sobic007G061700--Sobic004G246100 Sobic003G401000 Sobic003G401000 Sobic007G061700--Sobic003G401000 Sobic006G046700 Sobic006G046700 Sobic007G061700--Sobic006G046700 Sobic007G061700--Sobic001G542700 Sobic008G153000 Sobic008G153000 Sobic007G061700--Sobic008G153000 Sobic001G544200 Sobic001G544200 Sobic007G061700--Sobic001G544200 Sobic004G031700 Sobic004G031700 Sobic007G061700--Sobic004G031700
Octagon: transcription factors


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