Gene annotation
Transcriptome id Sobic.007G031600.1
Synonym
Functional annotation zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
UniProt Q7FS92 , A0A1B6PF96
Pfam PF00642
Panther DB PTHR36886 PTHR36886:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G18640 : Zinc finger C-x8-C-x5-C-x3-H type family protein
RAP-DB (Rice) LOC_Os08g04170.1 : zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
MaizeGDB (Corn) Zm00025a055282
Brachypodium KQJ94984
Barley -
Wheat TraesCS6B02G372100 , TraesCS6A02G340600 , TraesCS6D02G321200
Populus -


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cDNA sequences
Sobic.007G031600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G293200 plus-3 domain containing protein, expressed -
2 Sobic.009G166100 PWWP domain containing protein, expressed -
3 Sobic.006G210000 zinc finger domain, LSD1 subclass family protein, expressed -
4 Sobic.008G100100 MYB family transcription factor, putative, expressed K12860: CDC5L, CDC5, pre-mRNA-splicing factor CDC5/CEF1
5 Sobic.004G156500 expressed protein -
6 Sobic.001G170100 WD domain, G-beta repeat domain containing protein, expressed -
7 Sobic.008G131000 domain of unknown function family protein, expressed -
8 Sobic.001G352900 intron-binding protein aquarius, putative, expressed K12874: intron-binding protein aquarius
9 Sobic.004G009600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
10 Sobic.010G001100 chromo domain containing protein, expressed -
11 Sobic.005G220000 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
12 Sobic.001G111600 expressed protein -
13 Sobic.004G246100 nicalin, putative, expressed K06171: nicastrin
14 Sobic.010G236400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K12847: USP39, U4/U6.U5 tri-snRNP-associated protein 2
15 Sobic.009G260500 tetratricopeptide repeat containing protein, putative, expressed K14408: CSTF3, cleavage stimulation factor subunit 3
16 Sobic.010G065300 expressed protein K11643: CHD4, chromodomain-helicase-DNA-binding protein 4
17 Sobic.004G048800 - K12599: SKI2, antiviral helicase SKI2
18 Sobic.003G416700 homeobox domain containing protein, expressed -
19 Sobic.002G164800 SET domain containing protein, expressed K11423: [histone H3]-dimethyl-L-lysine36 N-methyltransferase
20 Sobic.001G138400 crooked neck, putative, expressed K12869: CRN, CRNKL1, CLF1, crooked neck


Gene co-expression network
sample Sobic007G031600 Sobic007G031600 Sobic003G293200 Sobic003G293200 Sobic007G031600--Sobic003G293200 Sobic009G166100 Sobic009G166100 Sobic007G031600--Sobic009G166100 Sobic006G210000 Sobic006G210000 Sobic007G031600--Sobic006G210000 Sobic008G100100 Sobic008G100100 Sobic007G031600--Sobic008G100100 Sobic004G156500 Sobic004G156500 Sobic007G031600--Sobic004G156500 Sobic001G170100 Sobic001G170100 Sobic007G031600--Sobic001G170100 Sobic008G131000 Sobic008G131000 Sobic007G031600--Sobic008G131000 Sobic001G352900 Sobic001G352900 Sobic007G031600--Sobic001G352900 Sobic004G009600 Sobic004G009600 Sobic007G031600--Sobic004G009600 Sobic010G001100 Sobic010G001100 Sobic003G293200--Sobic010G001100 Sobic003G293200--Sobic009G166100 Sobic005G128400 Sobic005G128400 Sobic003G293200--Sobic005G128400 Sobic003G293200--Sobic004G009600 Sobic010G065300 Sobic010G065300 Sobic003G293200--Sobic010G065300 Sobic004G264300 Sobic004G264300 Sobic003G293200--Sobic004G264300 Sobic003G293200--Sobic007G031600 Sobic007G117400 Sobic007G117400 Sobic003G293200--Sobic007G117400 Sobic001G111600 Sobic001G111600 Sobic003G293200--Sobic001G111600 Sobic009G166100--Sobic003G293200 Sobic009G166100--Sobic004G009600 Sobic009G166100--Sobic007G031600 Sobic009G166100--Sobic010G001100 Sobic001G542700 Sobic001G542700 Sobic009G166100--Sobic001G542700 Sobic009G166100--Sobic001G111600 Sobic009G166100--Sobic007G117400 Sobic010G069100 Sobic010G069100 Sobic009G166100--Sobic010G069100 Sobic009G166100--Sobic010G065300 Sobic006G210000--Sobic010G001100 Sobic006G210000--Sobic003G293200 Sobic006G210000--Sobic004G156500 Sobic006G210000--Sobic010G065300 Sobic004G355800 Sobic004G355800 Sobic006G210000--Sobic004G355800 Sobic006G210000--Sobic007G031600 Sobic006G210000--Sobic008G100100 Sobic006G052300 Sobic006G052300 Sobic006G210000--Sobic006G052300 Sobic005G191900 Sobic005G191900 Sobic006G210000--Sobic005G191900 Sobic008G100100--Sobic004G156500 Sobic001G306900 Sobic001G306900 Sobic008G100100--Sobic001G306900 Sobic006G032400 Sobic006G032400 Sobic008G100100--Sobic006G032400 Sobic005G015900 Sobic005G015900 Sobic008G100100--Sobic005G015900 Sobic008G100100--Sobic006G210000 Sobic008G100100--Sobic007G031600 Sobic008G100100--Sobic010G065300 Sobic003G241200 Sobic003G241200 Sobic008G100100--Sobic003G241200 Sobic010G096000 Sobic010G096000 Sobic008G100100--Sobic010G096000 Sobic004G156500--Sobic008G100100 Sobic004G156500--Sobic010G065300 Sobic001G134300 Sobic001G134300 Sobic004G156500--Sobic001G134300 Sobic004G156500--Sobic001G306900 Sobic006G118700 Sobic006G118700 Sobic004G156500--Sobic006G118700 Sobic004G156500--Sobic006G210000 Sobic003G416700 Sobic003G416700 Sobic004G156500--Sobic003G416700 Sobic002G357100 Sobic002G357100 Sobic004G156500--Sobic002G357100 Sobic002G259800 Sobic002G259800 Sobic004G156500--Sobic002G259800 Sobic006G138000 Sobic006G138000 Sobic001G170100--Sobic006G138000 Sobic001G518400 Sobic001G518400 Sobic001G170100--Sobic001G518400 Sobic001G426600 Sobic001G426600 Sobic001G170100--Sobic001G426600 Sobic001G335900 Sobic001G335900 Sobic001G170100--Sobic001G335900 Sobic001G369000 Sobic001G369000 Sobic001G170100--Sobic001G369000 Sobic010G275500 Sobic010G275500 Sobic001G170100--Sobic010G275500 Sobic003G240700 Sobic003G240700 Sobic001G170100--Sobic003G240700 Sobic010G147833 Sobic010G147833 Sobic001G170100--Sobic010G147833 Sobic007G019300 Sobic007G019300 Sobic001G170100--Sobic007G019300 Sobic010G236400 Sobic010G236400 Sobic008G131000--Sobic010G236400 Sobic008G083000 Sobic008G083000 Sobic008G131000--Sobic008G083000 Sobic003G266001 Sobic003G266001 Sobic008G131000--Sobic003G266001 Sobic002G396000 Sobic002G396000 Sobic008G131000--Sobic002G396000 Sobic010G209400 Sobic010G209400 Sobic008G131000--Sobic010G209400 Sobic003G401100 Sobic003G401100 Sobic008G131000--Sobic003G401100 Sobic006G194400 Sobic006G194400 Sobic008G131000--Sobic006G194400 Sobic004G084300 Sobic004G084300 Sobic008G131000--Sobic004G084300 Sobic003G187500 Sobic003G187500 Sobic008G131000--Sobic003G187500 Sobic010G053600 Sobic010G053600 Sobic001G352900--Sobic010G053600 Sobic002G391600 Sobic002G391600 Sobic001G352900--Sobic002G391600 Sobic004G242400 Sobic004G242400 Sobic001G352900--Sobic004G242400 Sobic001G352900--Sobic010G001100 Sobic009G109200 Sobic009G109200 Sobic001G352900--Sobic009G109200 Sobic002G317200 Sobic002G317200 Sobic001G352900--Sobic002G317200 Sobic002G397500 Sobic002G397500 Sobic001G352900--Sobic002G397500 Sobic001G219600 Sobic001G219600 Sobic001G352900--Sobic001G219600 Sobic001G352900--Sobic003G293200 Sobic009G040600 Sobic009G040600 Sobic004G009600--Sobic009G040600 Sobic008G028700 Sobic008G028700 Sobic004G009600--Sobic008G028700 Sobic009G260500 Sobic009G260500 Sobic004G009600--Sobic009G260500 Sobic010G279450 Sobic010G279450 Sobic004G009600--Sobic010G279450 Sobic002G309600 Sobic002G309600 Sobic004G009600--Sobic002G309600 Sobic004G009600--Sobic007G117400 Sobic004G009600--Sobic003G293200 Sobic001G363500 Sobic001G363500 Sobic004G009600--Sobic001G363500 Sobic010G277500 Sobic010G277500 Sobic004G009600--Sobic010G277500
Octagon: transcription factors


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