Gene annotation
Transcriptome id Sobic.010G236400.1
Synonym Sb10g027800
Functional annotation ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed
UniProt C5Z8A8
Pfam PF02148 PF00443
Panther DB PTHR24006 PTHR24006:SF521
NCBI CDD -
KEGG Orthology K12847; USP39, U4/U6.U5 tri-snRNP-associated protein 2
Gene Ontology GO:0008270; zinc ion binding GO:0016579protein deubiquitination


Orthologs (automatic annotation)
TAIR AT4G22285 : Ubiquitin C-terminal hydrolases superfamily protein
RAP-DB (Rice) LOC_Os09g24250.1 : ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a018180
Brachypodium KQK20012
Barley HORVU2Hr1G101300.1 , HORVU2Hr1G075680.2 , HORVU2Hr1G075680.3 , HORVU2Hr1G075680.1
Wheat TraesCS4A02G462100 , TraesCS7D02G024400 , TraesCS7A02G027300
Populus PNT29100 , PNT29101


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cDNA sequences
Sobic.010G236400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G084300 MYB family transcription factor, putative, expressed K11324: DMAP1, SWC4, DNA methyltransferase 1-associated protein 1
2 Sobic.002G264200 RNA recognition motif containing protein, expressed -
3 Sobic.010G069100 expressed protein -
4 Sobic.002G126500 RNA recognition motif containing protein, expressed -
5 Sobic.004G274200 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14
6 Sobic.010G116600 FHA domain containing protein, putative, expressed -
7 Sobic.007G183900 ubiquitin family protein, putative, expressed -
8 Sobic.002G071500 cleavage and polyadenylation specificity factor, putative, expressed K12830: SF3B3, SAP130, splicing factor 3B subunit 3
9 Sobic.003G401100 WW domain containing protein, expressed K12865: PQBP1, polyglutamine-binding protein 1
10 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
11 Sobic.003G241200 nucampholin, putative, expressed K13100: pre-mRNA-splicing factor CWC22
12 Sobic.009G040600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
13 Sobic.004G084700 - -
14 Sobic.010G204400 phox domain-containing protein, putative, expressed -
15 Sobic.008G153000 MATH domain containing protein, expressed -
16 Sobic.010G209400 WD domain, G-beta repeat domain containing protein, expressed K03130: transcription initiation factor TFIID subunit 5
17 Sobic.001G026200 heat shock protein DnaJ, putative, expressed K09534: DnaJ homolog subfamily C member 14
18 Sobic.008G173100 actin, putative, expressed K11662: ACTR6, actin-related protein 6
19 Sobic.003G160000 SUMO protease, putative, expressed K08592: sentrin-specific protease 1
20 Sobic.002G034600 zinc ion binding protein, putative, expressed -


Gene co-expression network
sample Sobic010G236400 Sobic010G236400 Sobic004G084300 Sobic004G084300 Sobic010G236400--Sobic004G084300 Sobic002G264200 Sobic002G264200 Sobic010G236400--Sobic002G264200 Sobic010G069100 Sobic010G069100 Sobic010G236400--Sobic010G069100 Sobic002G126500 Sobic002G126500 Sobic010G236400--Sobic002G126500 Sobic004G274200 Sobic004G274200 Sobic010G236400--Sobic004G274200 Sobic010G116600 Sobic010G116600 Sobic010G236400--Sobic010G116600 Sobic007G183900 Sobic007G183900 Sobic010G236400--Sobic007G183900 Sobic002G071500 Sobic002G071500 Sobic010G236400--Sobic002G071500 Sobic003G401100 Sobic003G401100 Sobic010G236400--Sobic003G401100 Sobic008G047800 Sobic008G047800 Sobic004G084300--Sobic008G047800 Sobic001G222500 Sobic001G222500 Sobic004G084300--Sobic001G222500 Sobic003G241200 Sobic003G241200 Sobic004G084300--Sobic003G241200 Sobic002G006900 Sobic002G006900 Sobic004G084300--Sobic002G006900 Sobic004G084300--Sobic010G236400 Sobic009G040600 Sobic009G040600 Sobic004G084300--Sobic009G040600 Sobic008G067600 Sobic008G067600 Sobic004G084300--Sobic008G067600 Sobic009G065100 Sobic009G065100 Sobic004G084300--Sobic009G065100 Sobic007G132400 Sobic007G132400 Sobic004G084300--Sobic007G132400 Sobic002G264200--Sobic010G069100 Sobic003G416700 Sobic003G416700 Sobic002G264200--Sobic003G416700 Sobic001G461400 Sobic001G461400 Sobic002G264200--Sobic001G461400 Sobic008G153000 Sobic008G153000 Sobic002G264200--Sobic008G153000 Sobic002G264200--Sobic010G236400 Sobic002G264200--Sobic002G071500 Sobic007G065400 Sobic007G065400 Sobic002G264200--Sobic007G065400 Sobic002G153700 Sobic002G153700 Sobic002G264200--Sobic002G153700 Sobic006G118700 Sobic006G118700 Sobic002G264200--Sobic006G118700 Sobic010G069100--Sobic002G071500 Sobic010G069100--Sobic002G264200 Sobic005G112300 Sobic005G112300 Sobic010G069100--Sobic005G112300 Sobic010G069100--Sobic008G047800 Sobic008G009700 Sobic008G009700 Sobic010G069100--Sobic008G009700 Sobic001G154900 Sobic001G154900 Sobic010G069100--Sobic001G154900 Sobic004G146500 Sobic004G146500 Sobic010G069100--Sobic004G146500 Sobic010G069100--Sobic007G065400 Sobic009G005500 Sobic009G005500 Sobic010G069100--Sobic009G005500 Sobic002G126500--Sobic010G236400 Sobic003G029100 Sobic003G029100 Sobic002G126500--Sobic003G029100 Sobic002G126500--Sobic003G241200 Sobic002G126500--Sobic004G084300 Sobic001G375700 Sobic001G375700 Sobic002G126500--Sobic001G375700 Sobic008G179700 Sobic008G179700 Sobic002G126500--Sobic008G179700 Sobic003G081000 Sobic003G081000 Sobic002G126500--Sobic003G081000 Sobic002G034600 Sobic002G034600 Sobic002G126500--Sobic002G034600 Sobic008G112800 Sobic008G112800 Sobic002G126500--Sobic008G112800 Sobic004G274200--Sobic008G047800 Sobic004G274200--Sobic010G236400 Sobic004G274200--Sobic004G146500 Sobic004G021100 Sobic004G021100 Sobic004G274200--Sobic004G021100 Sobic004G274200--Sobic008G112800 Sobic003G352200 Sobic003G352200 Sobic004G274200--Sobic003G352200 Sobic009G044800 Sobic009G044800 Sobic004G274200--Sobic009G044800 Sobic004G274200--Sobic002G071500 Sobic001G114000 Sobic001G114000 Sobic004G274200--Sobic001G114000 Sobic010G116600--Sobic002G071500 Sobic002G299700 Sobic002G299700 Sobic010G116600--Sobic002G299700 Sobic003G093800 Sobic003G093800 Sobic010G116600--Sobic003G093800 Sobic010G116600--Sobic009G044800 Sobic004G072100 Sobic004G072100 Sobic010G116600--Sobic004G072100 Sobic010G116600--Sobic010G236400 Sobic010G275500 Sobic010G275500 Sobic010G116600--Sobic010G275500 Sobic003G408600 Sobic003G408600 Sobic010G116600--Sobic003G408600 Sobic010G053800 Sobic010G053800 Sobic010G116600--Sobic010G053800 Sobic007G183900--Sobic003G416700 Sobic007G183900--Sobic006G118700 Sobic003G360400 Sobic003G360400 Sobic007G183900--Sobic003G360400 Sobic007G183900--Sobic010G236400 Sobic007G183900--Sobic009G044800 Sobic007G183900--Sobic010G069100 Sobic007G183900--Sobic010G275500 Sobic001G354600 Sobic001G354600 Sobic007G183900--Sobic001G354600 Sobic007G183900--Sobic002G264200 Sobic002G071500--Sobic005G112300 Sobic002G071500--Sobic003G408600 Sobic002G071500--Sobic008G009700 Sobic002G071500--Sobic010G116600 Sobic001G026200 Sobic001G026200 Sobic002G071500--Sobic001G026200 Sobic002G071500--Sobic002G153700 Sobic002G071500--Sobic010G069100 Sobic003G119000 Sobic003G119000 Sobic002G071500--Sobic003G119000 Sobic010G201500 Sobic010G201500 Sobic002G071500--Sobic010G201500 Sobic003G401100--Sobic010G236400 Sobic003G401100--Sobic004G084300 Sobic001G281600 Sobic001G281600 Sobic003G401100--Sobic001G281600 Sobic003G401100--Sobic003G081000 Sobic007G027700 Sobic007G027700 Sobic003G401100--Sobic007G027700 Sobic001G143500 Sobic001G143500 Sobic003G401100--Sobic001G143500 Sobic007G000800 Sobic007G000800 Sobic003G401100--Sobic007G000800 Sobic003G401100--Sobic004G274200 Sobic003G401100--Sobic003G241200
Octagon: transcription factors


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