Gene annotation
Transcriptome id Sobic.003G241200.1
Synonym Sb03g029810
Functional annotation nucampholin, putative, expressed
UniProt C5XF95
Pfam PF02847
Panther DB PTHR18034 PTHR18034:SF3
NCBI CDD -
KEGG Orthology K13100; pre-mRNA-splicing factor CWC22
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G80930 : MIF4G domain-containing protein / MA3 domain-containing protein
RAP-DB (Rice) LOC_Os12g15420.1 : nucampholin, putative, expressed
MaizeGDB (Corn) Zm00025a054301
Brachypodium KQJ91726
Barley -
Wheat TraesCS3B02G481400 , TraesCS3D02G438900 , TraesCS3A02G446300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G084300 MYB family transcription factor, putative, expressed K11324: DMAP1, SWC4, DNA methyltransferase 1-associated protein 1
2 Sobic.006G165000 RNA recognition motif containing protein, expressed -
3 Sobic.006G032400 expressed protein -
4 Sobic.002G248400 ENT domain containing protein, expressed -
5 Sobic.002G320500 MYB family transcription factor, putative, expressed -
6 Sobic.003G173950 - -
7 Sobic.010G236400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K12847: USP39, U4/U6.U5 tri-snRNP-associated protein 2
8 Sobic.003G200200 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
9 Sobic.002G157000 enhancer of polycomb, putative, expressed K11322: enhancer of polycomb-like protein
10 Sobic.007G132400 RNA recognition motif containing protein, putative, expressed K12881: THOC4, THO complex subunit 4
11 Sobic.005G154500 OsFBX407 - F-box domain containing protein, expressed -
12 Sobic.006G116100 RNA recognition motif containing protein, putative, expressed -
13 Sobic.006G173100 pre-mRNA-processing factor 31, putative, expressed K12844: U4/U6 small nuclear ribonucleoprotein PRP31
14 Sobic.003G160000 SUMO protease, putative, expressed K08592: sentrin-specific protease 1
15 Sobic.001G155000 DNA-directed RNA polymerase II subunit RPB2, putative, expressed K03010: RPB2, DNA-directed RNA polymerase II subunit RPB2
16 Sobic.003G220200 protein kinase family protein, putative, expressed K17541: SCY1-like protein 2
17 Sobic.001G094000 expressed protein -
18 Sobic.001G176200 FHA domain containing protein, putative, expressed K13216: PPP1R8, nuclear inhibitor of protein phosphatase 1
19 Sobic.003G401100 WW domain containing protein, expressed K12865: PQBP1, polyglutamine-binding protein 1
20 Sobic.010G245000 DTW domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic003G241200 Sobic003G241200 Sobic004G084300 Sobic004G084300 Sobic003G241200--Sobic004G084300 Sobic006G165000 Sobic006G165000 Sobic003G241200--Sobic006G165000 Sobic006G032400 Sobic006G032400 Sobic003G241200--Sobic006G032400 Sobic002G248400 Sobic002G248400 Sobic003G241200--Sobic002G248400 Sobic002G320500 Sobic002G320500 Sobic003G241200--Sobic002G320500 Sobic003G173950 Sobic003G173950 Sobic003G241200--Sobic003G173950 Sobic010G236400 Sobic010G236400 Sobic003G241200--Sobic010G236400 Sobic003G200200 Sobic003G200200 Sobic003G241200--Sobic003G200200 Sobic002G157000 Sobic002G157000 Sobic003G241200--Sobic002G157000 Sobic008G047800 Sobic008G047800 Sobic004G084300--Sobic008G047800 Sobic001G222500 Sobic001G222500 Sobic004G084300--Sobic001G222500 Sobic004G084300--Sobic003G241200 Sobic002G006900 Sobic002G006900 Sobic004G084300--Sobic002G006900 Sobic004G084300--Sobic010G236400 Sobic009G040600 Sobic009G040600 Sobic004G084300--Sobic009G040600 Sobic008G067600 Sobic008G067600 Sobic004G084300--Sobic008G067600 Sobic009G065100 Sobic009G065100 Sobic004G084300--Sobic009G065100 Sobic007G132400 Sobic007G132400 Sobic004G084300--Sobic007G132400 Sobic006G165000--Sobic003G241200 Sobic001G155000 Sobic001G155000 Sobic006G165000--Sobic001G155000 Sobic003G084900 Sobic003G084900 Sobic006G165000--Sobic003G084900 Sobic006G165000--Sobic003G200200 Sobic010G028800 Sobic010G028800 Sobic006G165000--Sobic010G028800 Sobic004G145500 Sobic004G145500 Sobic006G165000--Sobic004G145500 Sobic009G126600 Sobic009G126600 Sobic006G165000--Sobic009G126600 Sobic006G165000--Sobic001G222500 Sobic006G165000--Sobic006G032400 Sobic006G032400--Sobic002G320500 Sobic006G032400--Sobic002G248400 Sobic005G015900 Sobic005G015900 Sobic006G032400--Sobic005G015900 Sobic006G032400--Sobic003G241200 Sobic009G210500 Sobic009G210500 Sobic006G032400--Sobic009G210500 Sobic001G090400 Sobic001G090400 Sobic006G032400--Sobic001G090400 Sobic006G173100 Sobic006G173100 Sobic006G032400--Sobic006G173100 Sobic004G271000 Sobic004G271000 Sobic006G032400--Sobic004G271000 Sobic001G094000 Sobic001G094000 Sobic006G032400--Sobic001G094000 Sobic002G248400--Sobic002G157000 Sobic003G108700 Sobic003G108700 Sobic002G248400--Sobic003G108700 Sobic003G268300 Sobic003G268300 Sobic002G248400--Sobic003G268300 Sobic001G420200 Sobic001G420200 Sobic002G248400--Sobic001G420200 Sobic002G248400--Sobic002G320500 Sobic002G248400--Sobic003G200200 Sobic002G248400--Sobic006G032400 Sobic002G248400--Sobic001G090400 Sobic004G257400 Sobic004G257400 Sobic002G248400--Sobic004G257400 Sobic002G320500--Sobic002G157000 Sobic002G320500--Sobic002G248400 Sobic002G320500--Sobic009G065100 Sobic002G320500--Sobic009G210500 Sobic006G133800 Sobic006G133800 Sobic002G320500--Sobic006G133800 Sobic001G107500 Sobic001G107500 Sobic002G320500--Sobic001G107500 Sobic002G320500--Sobic006G032400 Sobic009G000500 Sobic009G000500 Sobic002G320500--Sobic009G000500 Sobic002G320500--Sobic001G090400 Sobic001G356500 Sobic001G356500 Sobic003G173950--Sobic001G356500 Sobic003G173950--Sobic003G241200 Sobic003G197800 Sobic003G197800 Sobic003G173950--Sobic003G197800 Sobic003G173950--Sobic002G320500 Sobic003G173950--Sobic002G157000 Sobic007G065400 Sobic007G065400 Sobic003G173950--Sobic007G065400 Sobic003G173950--Sobic004G084300 Sobic009G102500 Sobic009G102500 Sobic003G173950--Sobic009G102500 Sobic001G206100 Sobic001G206100 Sobic003G173950--Sobic001G206100 Sobic010G236400--Sobic004G084300 Sobic002G264200 Sobic002G264200 Sobic010G236400--Sobic002G264200 Sobic010G069100 Sobic010G069100 Sobic010G236400--Sobic010G069100 Sobic002G126500 Sobic002G126500 Sobic010G236400--Sobic002G126500 Sobic004G274200 Sobic004G274200 Sobic010G236400--Sobic004G274200 Sobic010G116600 Sobic010G116600 Sobic010G236400--Sobic010G116600 Sobic007G183900 Sobic007G183900 Sobic010G236400--Sobic007G183900 Sobic002G071500 Sobic002G071500 Sobic010G236400--Sobic002G071500 Sobic003G401100 Sobic003G401100 Sobic010G236400--Sobic003G401100 Sobic003G200200--Sobic002G157000 Sobic003G200200--Sobic002G006900 Sobic003G200200--Sobic003G268300 Sobic001G251700 Sobic001G251700 Sobic003G200200--Sobic001G251700 Sobic007G096600 Sobic007G096600 Sobic003G200200--Sobic007G096600 Sobic003G200200--Sobic002G248400 Sobic003G200200--Sobic001G155000 Sobic008G173900 Sobic008G173900 Sobic003G200200--Sobic008G173900 Sobic003G170100 Sobic003G170100 Sobic003G200200--Sobic003G170100 Sobic002G157000--Sobic002G248400 Sobic002G157000--Sobic002G320500 Sobic002G157000--Sobic003G200200 Sobic002G157000--Sobic001G420200 Sobic002G157000--Sobic008G173900 Sobic002G157000--Sobic003G268300 Sobic001G162300 Sobic001G162300 Sobic002G157000--Sobic001G162300 Sobic002G157000--Sobic003G108700 Sobic002G157000--Sobic001G094000
Octagon: transcription factors


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