Gene annotation
Transcriptome id Sobic.005G154500.3,Sobic.005G154500.2,Sobic.005G154500.4
Synonym Sb05g021720
Functional annotation OsFBX407 - F-box domain containing protein, expressed
UniProt A0A1B6PSP5 , A0A1Z5RIU1 , A0A1Z5RJN3
Pfam PF00646
Panther DB PTHR32212 PTHR32212:SF130
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G28410 : F-box/RNI-like superfamily protein,F-box/RNI-like/FBD-like domains-containing protein
RAP-DB (Rice) LOC_Os11g09630.1 : OsFBX407 - F-box domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.005G154500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G176200 FHA domain containing protein, putative, expressed K13216: PPP1R8, nuclear inhibitor of protein phosphatase 1
2 Sobic.004G345700 TBC domain containing protein, expressed -
3 Sobic.003G241200 nucampholin, putative, expressed K13100: pre-mRNA-splicing factor CWC22
4 Sobic.010G245000 DTW domain containing protein, putative, expressed -
5 Sobic.008G149800 histone acetyltransferase HAC5, putative, expressed K04498: EP300, CREBBP, E1A/CREB-binding protein
6 Sobic.008G173100 actin, putative, expressed K11662: ACTR6, actin-related protein 6
7 Sobic.005G015900 dnaJ domain containing protein, expressed -
8 Sobic.002G357700 phospholipid-transporting ATPase 2, putative, expressed K01530: phospholipid-translocating ATPase
9 Sobic.006G116100 RNA recognition motif containing protein, putative, expressed -
10 Sobic.005G013200 BAH domain containing protein, expressed -
11 Sobic.006G032400 expressed protein -
12 Sobic.004G084300 MYB family transcription factor, putative, expressed K11324: DMAP1, SWC4, DNA methyltransferase 1-associated protein 1
13 Sobic.002G370900 OsPOP16 - Putative Prolyl Oligopeptidase homologue, expressed K06889: uncharacterized protein
14 Sobic.002G320500 MYB family transcription factor, putative, expressed -
15 Sobic.002G260400 - -
16 Sobic.002G197100 RAD23 DNA repair protein, putative, expressed K10839: RAD23, UV excision repair protein RAD23
17 Sobic.004G219100 phosphatidylinositol N-acetylglucosaminyltransferase subunit C, putative, expressed K03859: PIGC, phosphatidylinositol N-acetylglucosaminyltransferase subunit C
18 Sobic.006G173100 pre-mRNA-processing factor 31, putative, expressed K12844: U4/U6 small nuclear ribonucleoprotein PRP31
19 Sobic.001G090400 PHD-finger domain containing protein, putative, expressed K11346: inhibitor of growth protein 4
20 Sobic.001G251700 OsPP2Ac-4 - Phosphatase 2A isoform 4 belonging to family 2, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit


Gene co-expression network
sample Sobic005G154500 Sobic005G154500 Sobic001G176200 Sobic001G176200 Sobic005G154500--Sobic001G176200 Sobic004G345700 Sobic004G345700 Sobic005G154500--Sobic004G345700 Sobic003G241200 Sobic003G241200 Sobic005G154500--Sobic003G241200 Sobic010G245000 Sobic010G245000 Sobic005G154500--Sobic010G245000 Sobic008G149800 Sobic008G149800 Sobic005G154500--Sobic008G149800 Sobic008G173100 Sobic008G173100 Sobic005G154500--Sobic008G173100 Sobic005G015900 Sobic005G015900 Sobic005G154500--Sobic005G015900 Sobic002G357700 Sobic002G357700 Sobic005G154500--Sobic002G357700 Sobic006G116100 Sobic006G116100 Sobic005G154500--Sobic006G116100 Sobic001G090400 Sobic001G090400 Sobic001G176200--Sobic001G090400 Sobic002G370900 Sobic002G370900 Sobic001G176200--Sobic002G370900 Sobic002G197100 Sobic002G197100 Sobic001G176200--Sobic002G197100 Sobic001G176200--Sobic005G154500 Sobic001G176200--Sobic005G015900 Sobic001G176200--Sobic004G345700 Sobic006G173100 Sobic006G173100 Sobic001G176200--Sobic006G173100 Sobic001G176200--Sobic010G245000 Sobic002G320500 Sobic002G320500 Sobic001G176200--Sobic002G320500 Sobic004G345700--Sobic002G197100 Sobic001G514000 Sobic001G514000 Sobic004G345700--Sobic001G514000 Sobic004G007300 Sobic004G007300 Sobic004G345700--Sobic004G007300 Sobic001G408700 Sobic001G408700 Sobic004G345700--Sobic001G408700 Sobic004G345700--Sobic005G154500 Sobic004G345700--Sobic001G176200 Sobic006G092800 Sobic006G092800 Sobic004G345700--Sobic006G092800 Sobic003G205501 Sobic003G205501 Sobic004G345700--Sobic003G205501 Sobic004G345700--Sobic010G245000 Sobic004G084300 Sobic004G084300 Sobic003G241200--Sobic004G084300 Sobic006G165000 Sobic006G165000 Sobic003G241200--Sobic006G165000 Sobic006G032400 Sobic006G032400 Sobic003G241200--Sobic006G032400 Sobic002G248400 Sobic002G248400 Sobic003G241200--Sobic002G248400 Sobic003G241200--Sobic002G320500 Sobic003G173950 Sobic003G173950 Sobic003G241200--Sobic003G173950 Sobic010G236400 Sobic010G236400 Sobic003G241200--Sobic010G236400 Sobic003G200200 Sobic003G200200 Sobic003G241200--Sobic003G200200 Sobic002G157000 Sobic002G157000 Sobic003G241200--Sobic002G157000 Sobic002G056701 Sobic002G056701 Sobic010G245000--Sobic002G056701 Sobic010G245000--Sobic001G176200 Sobic010G245000--Sobic004G345700 Sobic010G245000--Sobic004G084300 Sobic010G245000--Sobic005G154500 Sobic002G264200 Sobic002G264200 Sobic010G245000--Sobic002G264200 Sobic010G245000--Sobic008G173100 Sobic010G245000--Sobic003G241200 Sobic002G260400 Sobic002G260400 Sobic010G245000--Sobic002G260400 Sobic008G149800--Sobic006G116100 Sobic008G153000 Sobic008G153000 Sobic008G149800--Sobic008G153000 Sobic007G061700 Sobic007G061700 Sobic008G149800--Sobic007G061700 Sobic008G149800--Sobic002G357700 Sobic002G164300 Sobic002G164300 Sobic008G149800--Sobic002G164300 Sobic004G246100 Sobic004G246100 Sobic008G149800--Sobic004G246100 Sobic002G158700 Sobic002G158700 Sobic008G149800--Sobic002G158700 Sobic008G149800--Sobic005G154500 Sobic001G155000 Sobic001G155000 Sobic008G149800--Sobic001G155000 Sobic008G173100--Sobic002G260400 Sobic007G090430 Sobic007G090430 Sobic008G173100--Sobic007G090430 Sobic008G173100--Sobic006G116100 Sobic002G063900 Sobic002G063900 Sobic008G173100--Sobic002G063900 Sobic008G173100--Sobic002G264200 Sobic008G173100--Sobic010G236400 Sobic008G173100--Sobic008G153000 Sobic001G311500 Sobic001G311500 Sobic008G173100--Sobic001G311500 Sobic008G173100--Sobic010G245000 Sobic005G015900--Sobic006G032400 Sobic004G031700 Sobic004G031700 Sobic005G015900--Sobic004G031700 Sobic004G219100 Sobic004G219100 Sobic005G015900--Sobic004G219100 Sobic005G015900--Sobic001G176200 Sobic005G015900--Sobic002G320500 Sobic005G015900--Sobic001G090400 Sobic005G015900--Sobic002G158700 Sobic001G303675 Sobic001G303675 Sobic005G015900--Sobic001G303675 Sobic003G445400 Sobic003G445400 Sobic005G015900--Sobic003G445400 Sobic002G357700--Sobic008G149800 Sobic002G357700--Sobic006G116100 Sobic002G357700--Sobic005G154500 Sobic002G357700--Sobic002G164300 Sobic005G013200 Sobic005G013200 Sobic002G357700--Sobic005G013200 Sobic002G357700--Sobic002G063900 Sobic006G186400 Sobic006G186400 Sobic002G357700--Sobic006G186400 Sobic002G357700--Sobic008G153000 Sobic009G126600 Sobic009G126600 Sobic002G357700--Sobic009G126600 Sobic006G116100--Sobic008G153000 Sobic006G116100--Sobic008G149800 Sobic006G116100--Sobic008G173100 Sobic003G160000 Sobic003G160000 Sobic006G116100--Sobic003G160000 Sobic006G116100--Sobic002G063900 Sobic006G116100--Sobic002G357700 Sobic006G116100--Sobic003G241200 Sobic009G119000 Sobic009G119000 Sobic006G116100--Sobic009G119000 Sobic003G416700 Sobic003G416700 Sobic006G116100--Sobic003G416700
Octagon: transcription factors


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