Gene annotation
Transcriptome id Sobic.001G090400.1
Synonym Sb01g008160, ING2
Functional annotation PHD-finger domain containing protein, putative, expressed
UniProt C5X153
Pfam PF00628 PF12998
Panther DB PTHR10333
NCBI CDD KOG1973; Chromatin remodeling protein, contains PHD Zn-finger
KEGG Orthology K11346; inhibitor of growth protein 4
Gene Ontology GO:0005515; protein binding GO:0016568chromatin organization GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT1G54390 : PHD finger protein-related
RAP-DB (Rice) LOC_Os03g53700.1 : PHD-finger domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a008139
Brachypodium KQK13223 , KQJ83903 , KQJ83904
Barley HORVU5Hr1G094910.1 , HORVU5Hr1G094910.2 , HORVU5Hr1G094910.3 , HORVU5Hr1G094910.4 , HORVU5Hr1G094910.5
Wheat TraesCS5A02G386800 , TraesCS5B02G391700 , TraesCS5D02G396600
Populus -


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cDNA sequences
Sobic.001G090400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G067600 protein kinase PKN/PRK1, effector, putative, expressed -
2 Sobic.006G173100 pre-mRNA-processing factor 31, putative, expressed K12844: U4/U6 small nuclear ribonucleoprotein PRP31
3 Sobic.004G057400 copper-transporting ATPase, putative, expressed K17686: copA, ctpA, P-type Cu+ transporter
4 Sobic.001G176200 FHA domain containing protein, putative, expressed K13216: PPP1R8, nuclear inhibitor of protein phosphatase 1
5 Sobic.002G320500 MYB family transcription factor, putative, expressed -
6 Sobic.009G000500 pex14, putative, expressed K13343: peroxin-14
7 Sobic.002G157300 Ser/Thr protein phosphatase family protein, putative, expressed K15423: serine/threonine-protein phosphatase 4 catalytic subunit
8 Sobic.004G205600 bromodomain domain containing protein, expressed -
9 Sobic.002G248400 ENT domain containing protein, expressed -
10 Sobic.006G128900 cyclin-dependent kinase G-2, putative, expressed K08818: cell division cycle 2-like
11 Sobic.006G032400 expressed protein -
12 Sobic.003G445400 vacuolar fusion protein MON1 homolog A, putative, expressed -
13 Sobic.009G210500 expressed protein -
14 Sobic.002G157000 enhancer of polycomb, putative, expressed K11322: enhancer of polycomb-like protein
15 Sobic.004G084300 MYB family transcription factor, putative, expressed K11324: DMAP1, SWC4, DNA methyltransferase 1-associated protein 1
16 Sobic.004G031700 expressed protein -
17 Sobic.007G011400 armadillo/beta-catenin repeat family protein, putative, expressed -
18 Sobic.001G107500 cyclin-dependent kinase, putative, expressed K08819: cyclin-dependent kinase 12/13
19 Sobic.002G158700 TATA binding protein-associated factor, putative, expressed K03131: transcription initiation factor TFIID subunit 6
20 Sobic.002G197100 RAD23 DNA repair protein, putative, expressed K10839: RAD23, UV excision repair protein RAD23


Gene co-expression network
sample Sobic001G090400 Sobic001G090400 Sobic008G067600 Sobic008G067600 Sobic001G090400--Sobic008G067600 Sobic006G173100 Sobic006G173100 Sobic001G090400--Sobic006G173100 Sobic004G057400 Sobic004G057400 Sobic001G090400--Sobic004G057400 Sobic001G176200 Sobic001G176200 Sobic001G090400--Sobic001G176200 Sobic002G320500 Sobic002G320500 Sobic001G090400--Sobic002G320500 Sobic009G000500 Sobic009G000500 Sobic001G090400--Sobic009G000500 Sobic002G157300 Sobic002G157300 Sobic001G090400--Sobic002G157300 Sobic004G205600 Sobic004G205600 Sobic001G090400--Sobic004G205600 Sobic002G248400 Sobic002G248400 Sobic001G090400--Sobic002G248400 Sobic008G067600--Sobic001G090400 Sobic003G445400 Sobic003G445400 Sobic008G067600--Sobic003G445400 Sobic004G084300 Sobic004G084300 Sobic008G067600--Sobic004G084300 Sobic008G067600--Sobic002G157300 Sobic001G315100 Sobic001G315100 Sobic008G067600--Sobic001G315100 Sobic001G512700 Sobic001G512700 Sobic008G067600--Sobic001G512700 Sobic008G067600--Sobic009G000500 Sobic008G067600--Sobic004G057400 Sobic008G047800 Sobic008G047800 Sobic008G067600--Sobic008G047800 Sobic006G173100--Sobic001G090400 Sobic006G173100--Sobic002G157300 Sobic003G187400 Sobic003G187400 Sobic006G173100--Sobic003G187400 Sobic002G197100 Sobic002G197100 Sobic006G173100--Sobic002G197100 Sobic004G021100 Sobic004G021100 Sobic006G173100--Sobic004G021100 Sobic006G032400 Sobic006G032400 Sobic006G173100--Sobic006G032400 Sobic006G173100--Sobic001G512700 Sobic004G067700 Sobic004G067700 Sobic006G173100--Sobic004G067700 Sobic002G370900 Sobic002G370900 Sobic006G173100--Sobic002G370900 Sobic004G057400--Sobic001G090400 Sobic004G057400--Sobic004G205600 Sobic004G057400--Sobic002G157300 Sobic004G057400--Sobic009G000500 Sobic004G057400--Sobic008G067600 Sobic006G128900 Sobic006G128900 Sobic004G057400--Sobic006G128900 Sobic007G011400 Sobic007G011400 Sobic004G057400--Sobic007G011400 Sobic004G031700 Sobic004G031700 Sobic004G057400--Sobic004G031700 Sobic007G205800 Sobic007G205800 Sobic004G057400--Sobic007G205800 Sobic001G176200--Sobic001G090400 Sobic001G176200--Sobic002G370900 Sobic001G176200--Sobic002G197100 Sobic005G154500 Sobic005G154500 Sobic001G176200--Sobic005G154500 Sobic005G015900 Sobic005G015900 Sobic001G176200--Sobic005G015900 Sobic004G345700 Sobic004G345700 Sobic001G176200--Sobic004G345700 Sobic001G176200--Sobic006G173100 Sobic010G245000 Sobic010G245000 Sobic001G176200--Sobic010G245000 Sobic001G176200--Sobic002G320500 Sobic002G157000 Sobic002G157000 Sobic002G320500--Sobic002G157000 Sobic002G320500--Sobic002G248400 Sobic009G065100 Sobic009G065100 Sobic002G320500--Sobic009G065100 Sobic009G210500 Sobic009G210500 Sobic002G320500--Sobic009G210500 Sobic006G133800 Sobic006G133800 Sobic002G320500--Sobic006G133800 Sobic001G107500 Sobic001G107500 Sobic002G320500--Sobic001G107500 Sobic002G320500--Sobic006G032400 Sobic002G320500--Sobic009G000500 Sobic002G320500--Sobic001G090400 Sobic009G000500--Sobic004G031700 Sobic009G000500--Sobic003G445400 Sobic009G000500--Sobic002G320500 Sobic009G000500--Sobic006G128900 Sobic009G000500--Sobic006G133800 Sobic009G000500--Sobic001G090400 Sobic003G307000 Sobic003G307000 Sobic009G000500--Sobic003G307000 Sobic008G173900 Sobic008G173900 Sobic009G000500--Sobic008G173900 Sobic001G206100 Sobic001G206100 Sobic009G000500--Sobic001G206100 Sobic010G026400 Sobic010G026400 Sobic002G157300--Sobic010G026400 Sobic002G157300--Sobic003G187400 Sobic002G157300--Sobic007G011400 Sobic005G149500 Sobic005G149500 Sobic002G157300--Sobic005G149500 Sobic001G094000 Sobic001G094000 Sobic002G157300--Sobic001G094000 Sobic010G260500 Sobic010G260500 Sobic002G157300--Sobic010G260500 Sobic007G185900 Sobic007G185900 Sobic002G157300--Sobic007G185900 Sobic010G263800 Sobic010G263800 Sobic002G157300--Sobic010G263800 Sobic002G157300--Sobic006G173100 Sobic004G205600--Sobic004G057400 Sobic001G497300 Sobic001G497300 Sobic004G205600--Sobic001G497300 Sobic004G205600--Sobic001G090400 Sobic003G081000 Sobic003G081000 Sobic004G205600--Sobic003G081000 Sobic007G026300 Sobic007G026300 Sobic004G205600--Sobic007G026300 Sobic004G205600--Sobic009G000500 Sobic004G205600--Sobic002G157300 Sobic004G205600--Sobic009G065100 Sobic004G205600--Sobic002G157000 Sobic002G248400--Sobic002G157000 Sobic003G108700 Sobic003G108700 Sobic002G248400--Sobic003G108700 Sobic003G268300 Sobic003G268300 Sobic002G248400--Sobic003G268300 Sobic001G420200 Sobic001G420200 Sobic002G248400--Sobic001G420200 Sobic002G248400--Sobic002G320500 Sobic003G200200 Sobic003G200200 Sobic002G248400--Sobic003G200200 Sobic002G248400--Sobic006G032400 Sobic002G248400--Sobic001G090400 Sobic004G257400 Sobic004G257400 Sobic002G248400--Sobic004G257400
Octagon: transcription factors


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