Gene annotation
Transcriptome id Sobic.006G173100.1,Sobic.006G173100.2
Synonym emb1220, Sb06g024840
Functional annotation pre-mRNA-processing factor 31, putative, expressed
UniProt C5YDJ9
Pfam PF09785 PF01798
Panther DB PTHR13904
NCBI CDD -
KEGG Orthology K12844; U4/U6 small nuclear ribonucleoprotein PRP31
Gene Ontology GO:0000398; mRNA splicing, via spliceosome GO:0000244spliceosomal tri-snRNP complex assembly


Orthologs (automatic annotation)
TAIR AT1G60170 : pre-mRNA processing ribonucleoprotein binding region-containing protein
RAP-DB (Rice) LOC_Os07g04850.3,LOC_Os07g04850.2 : pre-mRNA-processing factor 31, putative, expressed
MaizeGDB (Corn) Zm00025a010285
Brachypodium KQK21016 , KQK21015 , KQK21014
Barley HORVU2Hr1G060770.40 , HORVU2Hr1G060770.42 , HORVU2Hr1G060770.6 , HORVU2Hr1G060770.28 , HORVU2Hr1G060770.27 , HORVU2Hr1G060770.26 , HORVU2Hr1G060770.25 , HORVU2Hr1G060770.35 , HORVU2Hr1G060770.37 , HORVU2Hr1G060770.33 , HORVU2Hr1G060770.19 , HORVU2Hr1G060770.18
Wheat TraesCS2B02G267700 , TraesCS2A02G254400 , TraesCS2D02G254900 , TraesCS1A02G376100 , TraesCS1A02G376100 , TraesCS1B02G396600 , TraesCS1B02G396600 , TraesCS1D02G383400 , TraesCS1D02G383400 , TraesCS2B02G046400 , TraesCS2B02G046400 , TraesCS1B02G396600
Populus -


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cDNA sequences
Sobic.006G173100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G090400 PHD-finger domain containing protein, putative, expressed K11346: inhibitor of growth protein 4
2 Sobic.002G157300 Ser/Thr protein phosphatase family protein, putative, expressed K15423: serine/threonine-protein phosphatase 4 catalytic subunit
3 Sobic.003G187400 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
4 Sobic.002G197100 RAD23 DNA repair protein, putative, expressed K10839: RAD23, UV excision repair protein RAD23
5 Sobic.004G021100 SSE1, putative, expressed K13335: peroxin-16
6 Sobic.006G032400 expressed protein -
7 Sobic.001G512700 myb/SANT domain protein, putative, expressed -
8 Sobic.004G067700 BRCA1-associated protein, putative, expressed K10632: BRCA1-associated protein
9 Sobic.002G370900 OsPOP16 - Putative Prolyl Oligopeptidase homologue, expressed K06889: uncharacterized protein
10 Sobic.009G056800 growth inhibition and differentiation-related protein 88, putative, expressed -
11 Sobic.001G251700 OsPP2Ac-4 - Phosphatase 2A isoform 4 belonging to family 2, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
12 Sobic.002G158700 TATA binding protein-associated factor, putative, expressed K03131: transcription initiation factor TFIID subunit 6
13 Sobic.003G081000 transcription factor, putative, expressed K14431: transcription factor TGA
14 Sobic.004G007300 expressed protein -
15 Sobic.001G514000 OsFBL10 - F-box domain and LRR containing protein, expressed -
16 Sobic.003G445400 vacuolar fusion protein MON1 homolog A, putative, expressed -
17 Sobic.001G176200 FHA domain containing protein, putative, expressed K13216: PPP1R8, nuclear inhibitor of protein phosphatase 1
18 Sobic.003G241200 nucampholin, putative, expressed K13100: pre-mRNA-splicing factor CWC22
19 Sobic.008G067600 protein kinase PKN/PRK1, effector, putative, expressed -
20 Sobic.008G153000 MATH domain containing protein, expressed -


Gene co-expression network
sample Sobic006G173100 Sobic006G173100 Sobic001G090400 Sobic001G090400 Sobic006G173100--Sobic001G090400 Sobic002G157300 Sobic002G157300 Sobic006G173100--Sobic002G157300 Sobic003G187400 Sobic003G187400 Sobic006G173100--Sobic003G187400 Sobic002G197100 Sobic002G197100 Sobic006G173100--Sobic002G197100 Sobic004G021100 Sobic004G021100 Sobic006G173100--Sobic004G021100 Sobic006G032400 Sobic006G032400 Sobic006G173100--Sobic006G032400 Sobic001G512700 Sobic001G512700 Sobic006G173100--Sobic001G512700 Sobic004G067700 Sobic004G067700 Sobic006G173100--Sobic004G067700 Sobic002G370900 Sobic002G370900 Sobic006G173100--Sobic002G370900 Sobic008G067600 Sobic008G067600 Sobic001G090400--Sobic008G067600 Sobic001G090400--Sobic006G173100 Sobic004G057400 Sobic004G057400 Sobic001G090400--Sobic004G057400 Sobic001G176200 Sobic001G176200 Sobic001G090400--Sobic001G176200 Sobic002G320500 Sobic002G320500 Sobic001G090400--Sobic002G320500 Sobic009G000500 Sobic009G000500 Sobic001G090400--Sobic009G000500 Sobic001G090400--Sobic002G157300 Sobic004G205600 Sobic004G205600 Sobic001G090400--Sobic004G205600 Sobic002G248400 Sobic002G248400 Sobic001G090400--Sobic002G248400 Sobic010G026400 Sobic010G026400 Sobic002G157300--Sobic010G026400 Sobic002G157300--Sobic003G187400 Sobic007G011400 Sobic007G011400 Sobic002G157300--Sobic007G011400 Sobic005G149500 Sobic005G149500 Sobic002G157300--Sobic005G149500 Sobic001G094000 Sobic001G094000 Sobic002G157300--Sobic001G094000 Sobic010G260500 Sobic010G260500 Sobic002G157300--Sobic010G260500 Sobic007G185900 Sobic007G185900 Sobic002G157300--Sobic007G185900 Sobic010G263800 Sobic010G263800 Sobic002G157300--Sobic010G263800 Sobic002G157300--Sobic006G173100 Sobic003G187400--Sobic002G157300 Sobic003G187400--Sobic005G149500 Sobic009G040700 Sobic009G040700 Sobic003G187400--Sobic009G040700 Sobic003G187400--Sobic001G094000 Sobic003G187400--Sobic006G173100 Sobic006G060100 Sobic006G060100 Sobic003G187400--Sobic006G060100 Sobic003G401000 Sobic003G401000 Sobic003G187400--Sobic003G401000 Sobic004G196700 Sobic004G196700 Sobic003G187400--Sobic004G196700 Sobic007G104800 Sobic007G104800 Sobic003G187400--Sobic007G104800 Sobic004G007300 Sobic004G007300 Sobic002G197100--Sobic004G007300 Sobic002G197100--Sobic006G173100 Sobic004G345700 Sobic004G345700 Sobic002G197100--Sobic004G345700 Sobic002G197100--Sobic001G176200 Sobic002G197100--Sobic001G090400 Sobic001G425000 Sobic001G425000 Sobic002G197100--Sobic001G425000 Sobic003G248500 Sobic003G248500 Sobic002G197100--Sobic003G248500 Sobic001G514000 Sobic001G514000 Sobic002G197100--Sobic001G514000 Sobic002G197100--Sobic002G370900 Sobic009G056800 Sobic009G056800 Sobic004G021100--Sobic009G056800 Sobic007G026300 Sobic007G026300 Sobic004G021100--Sobic007G026300 Sobic004G021100--Sobic001G512700 Sobic004G021100--Sobic006G173100 Sobic004G021100--Sobic007G104800 Sobic004G274200 Sobic004G274200 Sobic004G021100--Sobic004G274200 Sobic004G021100--Sobic004G205600 Sobic004G021100--Sobic003G187400 Sobic007G118600 Sobic007G118600 Sobic004G021100--Sobic007G118600 Sobic006G032400--Sobic002G320500 Sobic006G032400--Sobic002G248400 Sobic005G015900 Sobic005G015900 Sobic006G032400--Sobic005G015900 Sobic003G241200 Sobic003G241200 Sobic006G032400--Sobic003G241200 Sobic009G210500 Sobic009G210500 Sobic006G032400--Sobic009G210500 Sobic006G032400--Sobic001G090400 Sobic006G032400--Sobic006G173100 Sobic004G271000 Sobic004G271000 Sobic006G032400--Sobic004G271000 Sobic006G032400--Sobic001G094000 Sobic008G047800 Sobic008G047800 Sobic001G512700--Sobic008G047800 Sobic002G006900 Sobic002G006900 Sobic001G512700--Sobic002G006900 Sobic003G248200 Sobic003G248200 Sobic001G512700--Sobic003G248200 Sobic001G497300 Sobic001G497300 Sobic001G512700--Sobic001G497300 Sobic001G512700--Sobic007G118600 Sobic001G512700--Sobic004G021100 Sobic005G045300 Sobic005G045300 Sobic001G512700--Sobic005G045300 Sobic002G297200 Sobic002G297200 Sobic001G512700--Sobic002G297200 Sobic001G512700--Sobic008G067600 Sobic001G114000 Sobic001G114000 Sobic004G067700--Sobic001G114000 Sobic004G067700--Sobic006G173100 Sobic004G067700--Sobic002G370900 Sobic004G067700--Sobic001G512700 Sobic007G217000 Sobic007G217000 Sobic004G067700--Sobic007G217000 Sobic009G126400 Sobic009G126400 Sobic004G067700--Sobic009G126400 Sobic004G067700--Sobic005G045300 Sobic003G008500 Sobic003G008500 Sobic004G067700--Sobic003G008500 Sobic002G310200 Sobic002G310200 Sobic004G067700--Sobic002G310200 Sobic002G370900--Sobic001G176200 Sobic006G082900 Sobic006G082900 Sobic002G370900--Sobic006G082900 Sobic002G370900--Sobic004G067700 Sobic002G370900--Sobic006G173100 Sobic002G370900--Sobic003G008500 Sobic002G260400 Sobic002G260400 Sobic002G370900--Sobic002G260400 Sobic002G370900--Sobic002G310200 Sobic002G370900--Sobic002G197100 Sobic002G370900--Sobic004G345700
Octagon: transcription factors


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