Gene annotation
Transcriptome id Sobic.001G512700.5,Sobic.001G512700.3,Sobic.001G512700.4,Sobic.001G512700.2
Synonym TKI1, Sb01g047840
Functional annotation myb/SANT domain protein, putative, expressed
UniProt Q1KSB1 , A0A1B6QQN4 , A0A1Z5SBH8
Pfam PF00249
Panther DB PTHR21677
NCBI CDD KOG4468; Polycomb-group transcriptional regulator
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G36960 : TSL-kinase interacting protein 1
RAP-DB (Rice) LOC_Os03g13790.1,LOC_Os03g13790.2 : myb/SANT domain protein, putative, expressed
MaizeGDB (Corn) Zm00025a001510 , Zm00025a052922
Brachypodium KQK22636 , KQK22635
Barley HORVU4Hr1G064060.6 , HORVU4Hr1G064060.4 , HORVU4Hr1G064060.10 , HORVU4Hr1G064060.11 , HORVU4Hr1G064060.12 , HORVU4Hr1G064060.14 , HORVU4Hr1G064060.15 , HORVU4Hr1G064060.16 , HORVU4Hr1G064060.17 , HORVU4Hr1G064060.21 , HORVU4Hr1G064060.20 , HORVU4Hr1G064060.22 , HORVU4Hr1G064060.8 , HORVU4Hr1G064060.9 , HORVU4Hr1G064060.2 , HORVU4Hr1G064060.3 , HORVU4Hr1G064060.1 , HORVU4Hr1G064060.5 , HORVU4Hr1G064060.18 , HORVU4Hr1G064060.19 , HORVU4Hr1G064060.7 , HORVU4Hr1G064060.13
Wheat TraesCS4B02G228500 , TraesCS4A02G072600 , TraesCS4A02G072600 , TraesCS4D02G229400 , TraesCS4D02G229400
Populus -


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cDNA sequences
Sobic.001G512700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
2 Sobic.002G006900 tetratricopeptide repeat domain containing protein, expressed -
3 Sobic.003G248200 NLI interacting factor-like phosphatase, putative, expressed -
4 Sobic.001G497300 protein kinase domain containing protein, expressed -
5 Sobic.007G118600 mitochondrial carrier protein, putative, expressed K15119: solute carrier family 25, member 39/40
6 Sobic.004G021100 SSE1, putative, expressed K13335: peroxin-16
7 Sobic.005G045300 PX domain containing protein, putative, expressed K17925: sorting nexin-13
8 Sobic.002G297200 ZOS9-19 - C2H2 zinc finger protein, expressed -
9 Sobic.008G067600 protein kinase PKN/PRK1, effector, putative, expressed -
10 Sobic.006G173100 pre-mRNA-processing factor 31, putative, expressed K12844: U4/U6 small nuclear ribonucleoprotein PRP31
11 Sobic.004G084300 MYB family transcription factor, putative, expressed K11324: DMAP1, SWC4, DNA methyltransferase 1-associated protein 1
12 Sobic.007G026300 pre-mRNA-splicing factor SLU7, putative, expressed K12819: pre-mRNA-processing factor SLU7
13 Sobic.010G153700 cyclic nucleotide-gated ion channel 1, putative, expressed K05391: cyclic nucleotide gated channel, plant
14 Sobic.004G067700 BRCA1-associated protein, putative, expressed K10632: BRCA1-associated protein
15 Sobic.003G408500 beclin-1, putative, expressed K08334: BECN, VPS30, beclin
16 Sobic.007G104800 expressed protein -
17 Sobic.007G217000 tetratricopeptide repeat domain containing protein, expressed K13342: PEX5, peroxin-5
18 Sobic.003G200200 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
19 Sobic.002G315200 DNA-binding bromodomain-containing protein, putative, expressed -
20 Sobic.003G397800 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2


Gene co-expression network
sample Sobic001G512700 Sobic001G512700 Sobic008G047800 Sobic008G047800 Sobic001G512700--Sobic008G047800 Sobic002G006900 Sobic002G006900 Sobic001G512700--Sobic002G006900 Sobic003G248200 Sobic003G248200 Sobic001G512700--Sobic003G248200 Sobic001G497300 Sobic001G497300 Sobic001G512700--Sobic001G497300 Sobic007G118600 Sobic007G118600 Sobic001G512700--Sobic007G118600 Sobic004G021100 Sobic004G021100 Sobic001G512700--Sobic004G021100 Sobic005G045300 Sobic005G045300 Sobic001G512700--Sobic005G045300 Sobic002G297200 Sobic002G297200 Sobic001G512700--Sobic002G297200 Sobic008G067600 Sobic008G067600 Sobic001G512700--Sobic008G067600 Sobic008G047800--Sobic002G006900 Sobic004G084300 Sobic004G084300 Sobic008G047800--Sobic004G084300 Sobic008G047800--Sobic001G512700 Sobic001G155000 Sobic001G155000 Sobic008G047800--Sobic001G155000 Sobic009G040600 Sobic009G040600 Sobic008G047800--Sobic009G040600 Sobic007G011300 Sobic007G011300 Sobic008G047800--Sobic007G011300 Sobic007G217000 Sobic007G217000 Sobic008G047800--Sobic007G217000 Sobic004G274200 Sobic004G274200 Sobic008G047800--Sobic004G274200 Sobic002G309600 Sobic002G309600 Sobic008G047800--Sobic002G309600 Sobic002G006900--Sobic008G047800 Sobic007G065400 Sobic007G065400 Sobic002G006900--Sobic007G065400 Sobic003G200200 Sobic003G200200 Sobic002G006900--Sobic003G200200 Sobic003G372700 Sobic003G372700 Sobic002G006900--Sobic003G372700 Sobic002G006900--Sobic009G040600 Sobic002G006900--Sobic001G155000 Sobic002G006900--Sobic002G309600 Sobic001G214300 Sobic001G214300 Sobic002G006900--Sobic001G214300 Sobic002G006900--Sobic001G512700 Sobic003G248200--Sobic001G512700 Sobic001G356600 Sobic001G356600 Sobic003G248200--Sobic001G356600 Sobic008G179700 Sobic008G179700 Sobic003G248200--Sobic008G179700 Sobic004G066200 Sobic004G066200 Sobic003G248200--Sobic004G066200 Sobic003G248200--Sobic008G047800 Sobic006G200600 Sobic006G200600 Sobic003G248200--Sobic006G200600 Sobic003G081000 Sobic003G081000 Sobic003G248200--Sobic003G081000 Sobic003G248200--Sobic004G274200 Sobic003G248200--Sobic002G297200 Sobic007G104800 Sobic007G104800 Sobic001G497300--Sobic007G104800 Sobic001G497300--Sobic001G512700 Sobic001G497300--Sobic002G006900 Sobic006G237400 Sobic006G237400 Sobic001G497300--Sobic006G237400 Sobic004G205600 Sobic004G205600 Sobic001G497300--Sobic004G205600 Sobic001G413500 Sobic001G413500 Sobic001G497300--Sobic001G413500 Sobic001G497300--Sobic008G047800 Sobic005G023900 Sobic005G023900 Sobic001G497300--Sobic005G023900 Sobic002G157000 Sobic002G157000 Sobic001G497300--Sobic002G157000 Sobic007G118600--Sobic001G512700 Sobic007G118600--Sobic007G217000 Sobic003G187400 Sobic003G187400 Sobic007G118600--Sobic003G187400 Sobic007G118600--Sobic004G021100 Sobic007G118600--Sobic008G047800 Sobic006G173100 Sobic006G173100 Sobic007G118600--Sobic006G173100 Sobic007G118600--Sobic001G155000 Sobic004G067700 Sobic004G067700 Sobic007G118600--Sobic004G067700 Sobic007G118600--Sobic005G045300 Sobic009G056800 Sobic009G056800 Sobic004G021100--Sobic009G056800 Sobic007G026300 Sobic007G026300 Sobic004G021100--Sobic007G026300 Sobic004G021100--Sobic001G512700 Sobic004G021100--Sobic006G173100 Sobic004G021100--Sobic007G104800 Sobic004G021100--Sobic004G274200 Sobic004G021100--Sobic004G205600 Sobic004G021100--Sobic003G187400 Sobic004G021100--Sobic007G118600 Sobic005G045300--Sobic001G512700 Sobic003G408500 Sobic003G408500 Sobic005G045300--Sobic003G408500 Sobic010G129200 Sobic010G129200 Sobic005G045300--Sobic010G129200 Sobic003G445400 Sobic003G445400 Sobic005G045300--Sobic003G445400 Sobic009G166300 Sobic009G166300 Sobic005G045300--Sobic009G166300 Sobic004G031700 Sobic004G031700 Sobic005G045300--Sobic004G031700 Sobic006G128900 Sobic006G128900 Sobic005G045300--Sobic006G128900 Sobic005G045300--Sobic002G006900 Sobic008G024600 Sobic008G024600 Sobic005G045300--Sobic008G024600 Sobic003G397800 Sobic003G397800 Sobic002G297200--Sobic003G397800 Sobic010G101800 Sobic010G101800 Sobic002G297200--Sobic010G101800 Sobic002G297200--Sobic001G512700 Sobic004G146500 Sobic004G146500 Sobic002G297200--Sobic004G146500 Sobic002G297200--Sobic008G047800 Sobic001G109800 Sobic001G109800 Sobic002G297200--Sobic001G109800 Sobic002G297200--Sobic001G155000 Sobic001G205200 Sobic001G205200 Sobic002G297200--Sobic001G205200 Sobic002G297200--Sobic002G006900 Sobic001G090400 Sobic001G090400 Sobic008G067600--Sobic001G090400 Sobic008G067600--Sobic003G445400 Sobic008G067600--Sobic004G084300 Sobic002G157300 Sobic002G157300 Sobic008G067600--Sobic002G157300 Sobic001G315100 Sobic001G315100 Sobic008G067600--Sobic001G315100 Sobic008G067600--Sobic001G512700 Sobic009G000500 Sobic009G000500 Sobic008G067600--Sobic009G000500 Sobic004G057400 Sobic004G057400 Sobic008G067600--Sobic004G057400 Sobic008G067600--Sobic008G047800
Octagon: transcription factors


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