Gene annotation
Transcriptome id Sobic.007G217000.2,Sobic.007G217000.1
Synonym ATPEX5, Sb07g028340, PEX5
Functional annotation tetratricopeptide repeat domain containing protein, expressed
UniProt C5YJ82 , C5YJ74
Pfam PF13371 PF07719
Panther DB PTHR10130 PTHR10130:SF0
NCBI CDD KOG1125; TPR repeat-containing protein
KEGG Orthology K13342; PEX5, peroxin-5
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G56290 : peroxin 5
RAP-DB (Rice) LOC_Os08g39080.1,LOC_Os08g39080.2 : tetratricopeptide repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a033760 , Zm00025a005009
Brachypodium PNT68366 , KQJ98851 , KQJ98852
Barley HORVU7Hr1G049220.8 , HORVU7Hr1G049220.9 , HORVU7Hr1G049220.6 , HORVU7Hr1G049220.7 , HORVU7Hr1G049220.4 , HORVU7Hr1G049220.5 , HORVU7Hr1G049220.2 , HORVU7Hr1G049220.3 , HORVU7Hr1G049220.1 , HORVU7Hr1G049220.14 , HORVU7Hr1G049220.15 , HORVU7Hr1G049220.10 , HORVU7Hr1G049220.11 , HORVU7Hr1G049220.12 , HORVU7Hr1G049220.13
Wheat TraesCS6A02G105000 , TraesCS6A02G105000 , TraesCS7B02G137000 , TraesCS7A02G241500 , TraesCS7A02G241500 , TraesCS7A02G241500 , TraesCS7A02G241500 , TraesCS7A02G241500 , TraesCS7B02G137000 , TraesCS7B02G137000 , TraesCS7D02G240500 , TraesCS7D02G240500 , TraesCS7D02G240500 , TraesCS7D02G240500 , TraesCS6A02G105000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G114000 expressed protein -
2 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
3 Sobic.009G166300 HECT-domain domain containing protein, expressed K10590: E3 ubiquitin-protein ligase TRIP12
4 Sobic.001G155000 DNA-directed RNA polymerase II subunit RPB2, putative, expressed K03010: RPB2, DNA-directed RNA polymerase II subunit RPB2
5 Sobic.001G474600 calmodulin-binding transcription activator, putative, expressed -
6 Sobic.007G011300 SGR2, putative, expressed -
7 Sobic.007G118600 mitochondrial carrier protein, putative, expressed K15119: solute carrier family 25, member 39/40
8 Sobic.002G310200 expressed protein -
9 Sobic.004G067700 BRCA1-associated protein, putative, expressed K10632: BRCA1-associated protein
10 Sobic.001G512700 myb/SANT domain protein, putative, expressed -
11 Sobic.002G006900 tetratricopeptide repeat domain containing protein, expressed -
12 Sobic.007G096000 expressed protein -
13 Sobic.004G072100 centromere/kinetochore protein zw10, putative, expressed K11578: ZW10, protein transport protein DSL1/ZW10
14 Sobic.001G222500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
15 Sobic.002G112700 glutamine-dependent NAD, putative, expressed K01950: E6.3.5.1, NADSYN1, QNS1, NAD+ synthase (glutamine-hydrolysing)
16 Sobic.003G397800 - K12823: DDX5, ATP-dependent RNA helicase DDX5/DBP2
17 Sobic.009G126400 glycine-rich protein, putative, expressed K14845: RAI1, RAT1-interacting protein
18 Sobic.005G045300 PX domain containing protein, putative, expressed K17925: sorting nexin-13
19 Sobic.001G125200 HEAT repeat family protein, putative, expressed -
20 Sobic.002G315200 DNA-binding bromodomain-containing protein, putative, expressed -


Gene co-expression network
sample Sobic007G217000 Sobic007G217000 Sobic001G114000 Sobic001G114000 Sobic007G217000--Sobic001G114000 Sobic008G047800 Sobic008G047800 Sobic007G217000--Sobic008G047800 Sobic009G166300 Sobic009G166300 Sobic007G217000--Sobic009G166300 Sobic001G155000 Sobic001G155000 Sobic007G217000--Sobic001G155000 Sobic001G474600 Sobic001G474600 Sobic007G217000--Sobic001G474600 Sobic007G011300 Sobic007G011300 Sobic007G217000--Sobic007G011300 Sobic007G118600 Sobic007G118600 Sobic007G217000--Sobic007G118600 Sobic002G310200 Sobic002G310200 Sobic007G217000--Sobic002G310200 Sobic004G067700 Sobic004G067700 Sobic007G217000--Sobic004G067700 Sobic001G114000--Sobic007G217000 Sobic002G112700 Sobic002G112700 Sobic001G114000--Sobic002G112700 Sobic001G065000 Sobic001G065000 Sobic001G114000--Sobic001G065000 Sobic001G114000--Sobic004G067700 Sobic001G114000--Sobic009G166300 Sobic001G114000--Sobic008G047800 Sobic004G072100 Sobic004G072100 Sobic001G114000--Sobic004G072100 Sobic005G118600 Sobic005G118600 Sobic001G114000--Sobic005G118600 Sobic009G126400 Sobic009G126400 Sobic001G114000--Sobic009G126400 Sobic002G006900 Sobic002G006900 Sobic008G047800--Sobic002G006900 Sobic004G084300 Sobic004G084300 Sobic008G047800--Sobic004G084300 Sobic001G512700 Sobic001G512700 Sobic008G047800--Sobic001G512700 Sobic008G047800--Sobic001G155000 Sobic009G040600 Sobic009G040600 Sobic008G047800--Sobic009G040600 Sobic008G047800--Sobic007G011300 Sobic008G047800--Sobic007G217000 Sobic004G274200 Sobic004G274200 Sobic008G047800--Sobic004G274200 Sobic002G309600 Sobic002G309600 Sobic008G047800--Sobic002G309600 Sobic009G166300--Sobic007G217000 Sobic003G408500 Sobic003G408500 Sobic009G166300--Sobic003G408500 Sobic009G166300--Sobic001G474600 Sobic009G166300--Sobic007G011300 Sobic009G166300--Sobic001G114000 Sobic009G166300--Sobic008G047800 Sobic005G045300 Sobic005G045300 Sobic009G166300--Sobic005G045300 Sobic009G166300--Sobic005G118600 Sobic001G109800 Sobic001G109800 Sobic009G166300--Sobic001G109800 Sobic001G155000--Sobic008G047800 Sobic001G155000--Sobic002G006900 Sobic003G200200 Sobic003G200200 Sobic001G155000--Sobic003G200200 Sobic001G155000--Sobic009G040600 Sobic001G222500 Sobic001G222500 Sobic001G155000--Sobic001G222500 Sobic001G155000--Sobic007G011300 Sobic008G153000 Sobic008G153000 Sobic001G155000--Sobic008G153000 Sobic010G053800 Sobic010G053800 Sobic001G155000--Sobic010G053800 Sobic001G155000--Sobic007G217000 Sobic003G280800 Sobic003G280800 Sobic001G474600--Sobic003G280800 Sobic001G474600--Sobic009G166300 Sobic001G125200 Sobic001G125200 Sobic001G474600--Sobic001G125200 Sobic003G372700 Sobic003G372700 Sobic001G474600--Sobic003G372700 Sobic001G474600--Sobic007G217000 Sobic007G096000 Sobic007G096000 Sobic001G474600--Sobic007G096000 Sobic007G207000 Sobic007G207000 Sobic001G474600--Sobic007G207000 Sobic009G191000 Sobic009G191000 Sobic001G474600--Sobic009G191000 Sobic001G241200 Sobic001G241200 Sobic001G474600--Sobic001G241200 Sobic007G011300--Sobic008G047800 Sobic007G011300--Sobic009G166300 Sobic007G011300--Sobic001G155000 Sobic007G011300--Sobic002G006900 Sobic005G112300 Sobic005G112300 Sobic007G011300--Sobic005G112300 Sobic007G011300--Sobic007G217000 Sobic007G011300--Sobic009G040600 Sobic007G011300--Sobic002G112700 Sobic007G011300--Sobic001G114000 Sobic007G118600--Sobic001G512700 Sobic007G118600--Sobic007G217000 Sobic003G187400 Sobic003G187400 Sobic007G118600--Sobic003G187400 Sobic004G021100 Sobic004G021100 Sobic007G118600--Sobic004G021100 Sobic007G118600--Sobic008G047800 Sobic006G173100 Sobic006G173100 Sobic007G118600--Sobic006G173100 Sobic007G118600--Sobic001G155000 Sobic007G118600--Sobic004G067700 Sobic007G118600--Sobic005G045300 Sobic002G310200--Sobic001G222500 Sobic002G310200--Sobic008G047800 Sobic002G310200--Sobic007G217000 Sobic002G310200--Sobic004G084300 Sobic002G310200--Sobic007G096000 Sobic010G101800 Sobic010G101800 Sobic002G310200--Sobic010G101800 Sobic003G443100 Sobic003G443100 Sobic002G310200--Sobic003G443100 Sobic008G067600 Sobic008G067600 Sobic002G310200--Sobic008G067600 Sobic002G310200--Sobic004G067700 Sobic004G067700--Sobic001G114000 Sobic004G067700--Sobic006G173100 Sobic002G370900 Sobic002G370900 Sobic004G067700--Sobic002G370900 Sobic004G067700--Sobic001G512700 Sobic004G067700--Sobic007G217000 Sobic004G067700--Sobic009G126400 Sobic004G067700--Sobic005G045300 Sobic003G008500 Sobic003G008500 Sobic004G067700--Sobic003G008500 Sobic004G067700--Sobic002G310200
Octagon: transcription factors


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