Gene annotation
Transcriptome id Sobic.001G474600.1
Synonym Sb01g044480, EICBP.B, CAMTA1
Functional annotation calmodulin-binding transcription activator, putative, expressed
UniProt A0A1Z5SAZ0
Pfam PF00612 PF01833 PF03859
Panther DB PTHR23335 PTHR23335:SF7
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding GO:0005634nucleus GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT5G64220 : Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
RAP-DB (Rice) LOC_Os03g09100.1 : calmodulin-binding transcription activator, putative, expressed
MaizeGDB (Corn) Zm00025a001041 , Zm00025a017914
Brachypodium KQJ96511 , KQJ96510 , KQK23188
Barley HORVU4Hr1G078620.9 , HORVU4Hr1G078620.8 , HORVU4Hr1G078620.5 , HORVU4Hr1G078620.7 , HORVU4Hr1G078620.1 , HORVU4Hr1G078620.11 , HORVU4Hr1G078620.10 , HORVU4Hr1G078620.12 , HORVU4Hr1G078620.15 , HORVU4Hr1G078620.14 , HORVU4Hr1G078620.17 , HORVU4Hr1G078620.16 , HORVU4Hr1G078620.4 , HORVU4Hr1G078620.3 , HORVU4Hr1G078620.2 , HORVU4Hr1G078620.13
Wheat TraesCS4B02G306300 , TraesCS4B02G306300 , TraesCS4B02G306300 , TraesCS4B02G306300 , TraesCS4B02G306300 , TraesCS4B02G306300 , TraesCS4B02G306300 , TraesCS4A02G407100 , TraesCS4A02G407100 , TraesCS4A02G407100 , TraesCS4A02G407100 , TraesCS4A02G407100 , TraesCS5B02G521100 , TraesCS4A02G349800 , TraesCS4D02G304500 , TraesCS4D02G304500 , TraesCS4D02G304500 , TraesCS4D02G304500 , TraesCS4D02G304500 , TraesCS4D02G304500 , TraesCS5B02G521100 , TraesCS5B02G521100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G280800 RNA recognition motif family protein, expressed K13094: RNA-binding protein 5/10
2 Sobic.009G166300 HECT-domain domain containing protein, expressed K10590: E3 ubiquitin-protein ligase TRIP12
3 Sobic.001G125200 HEAT repeat family protein, putative, expressed -
4 Sobic.003G372700 expressed protein -
5 Sobic.007G217000 tetratricopeptide repeat domain containing protein, expressed K13342: PEX5, peroxin-5
6 Sobic.007G096000 expressed protein -
7 Sobic.007G207000 Highest expression level in primordial inflorescence(PubMedID : 27501690)@OsSPL15 - SBP-box gene family member, expressed -
8 Sobic.009G191000 MATH domain containing protein, expressed -
9 Sobic.001G241200 protein kinase domain containing protein, expressed -
10 Sobic.003G422500 expressed protein -
11 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
12 Sobic.002G309600 DNA-binding protein, putative, expressed K14326: UPF1, regulator of nonsense transcripts 1
13 Sobic.009G026500 ATSIZ1/SIZ1, putative, expressed -
14 Sobic.002G134200 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1
15 Sobic.009G010600 retinoblastoma-related protein-like, putative, expressed K04681: retinoblastoma-like protein 1
16 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
17 Sobic.001G058700 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
18 Sobic.004G347400 pumilio-family RNA binding protein, putative, expressed K17943: pumilio RNA-binding family
19 Sobic.002G006900 tetratricopeptide repeat domain containing protein, expressed -
20 Sobic.002G008900 sister chromatid cohesion 2, putative, expressed K06672: SCC2, cohesin loading factor subunit SCC2


Gene co-expression network
sample Sobic001G474600 Sobic001G474600 Sobic003G280800 Sobic003G280800 Sobic001G474600--Sobic003G280800 Sobic009G166300 Sobic009G166300 Sobic001G474600--Sobic009G166300 Sobic001G125200 Sobic001G125200 Sobic001G474600--Sobic001G125200 Sobic003G372700 Sobic003G372700 Sobic001G474600--Sobic003G372700 Sobic007G217000 Sobic007G217000 Sobic001G474600--Sobic007G217000 Sobic007G096000 Sobic007G096000 Sobic001G474600--Sobic007G096000 Sobic007G207000 Sobic007G207000 Sobic001G474600--Sobic007G207000 Sobic009G191000 Sobic009G191000 Sobic001G474600--Sobic009G191000 Sobic001G241200 Sobic001G241200 Sobic001G474600--Sobic001G241200 Sobic002G309600 Sobic002G309600 Sobic003G280800--Sobic002G309600 Sobic001G071400 Sobic001G071400 Sobic003G280800--Sobic001G071400 Sobic002G134200 Sobic002G134200 Sobic003G280800--Sobic002G134200 Sobic006G209850 Sobic006G209850 Sobic003G280800--Sobic006G209850 Sobic003G119000 Sobic003G119000 Sobic003G280800--Sobic003G119000 Sobic003G280800--Sobic001G474600 Sobic007G117400 Sobic007G117400 Sobic003G280800--Sobic007G117400 Sobic006G216800 Sobic006G216800 Sobic003G280800--Sobic006G216800 Sobic003G280800--Sobic003G372700 Sobic009G166300--Sobic007G217000 Sobic003G408500 Sobic003G408500 Sobic009G166300--Sobic003G408500 Sobic009G166300--Sobic001G474600 Sobic007G011300 Sobic007G011300 Sobic009G166300--Sobic007G011300 Sobic001G114000 Sobic001G114000 Sobic009G166300--Sobic001G114000 Sobic008G047800 Sobic008G047800 Sobic009G166300--Sobic008G047800 Sobic005G045300 Sobic005G045300 Sobic009G166300--Sobic005G045300 Sobic005G118600 Sobic005G118600 Sobic009G166300--Sobic005G118600 Sobic001G109800 Sobic001G109800 Sobic009G166300--Sobic001G109800 Sobic001G125200--Sobic001G474600 Sobic003G056100 Sobic003G056100 Sobic001G125200--Sobic003G056100 Sobic001G125200--Sobic007G207000 Sobic010G069100 Sobic010G069100 Sobic001G125200--Sobic010G069100 Sobic009G026500 Sobic009G026500 Sobic001G125200--Sobic009G026500 Sobic001G125200--Sobic009G166300 Sobic001G409600 Sobic001G409600 Sobic001G125200--Sobic001G409600 Sobic002G006900 Sobic002G006900 Sobic001G125200--Sobic002G006900 Sobic001G125200--Sobic007G217000 Sobic003G372700--Sobic002G006900 Sobic003G372700--Sobic003G119000 Sobic007G065400 Sobic007G065400 Sobic003G372700--Sobic007G065400 Sobic005G112300 Sobic005G112300 Sobic003G372700--Sobic005G112300 Sobic002G191800 Sobic002G191800 Sobic003G372700--Sobic002G191800 Sobic009G040600 Sobic009G040600 Sobic003G372700--Sobic009G040600 Sobic003G372700--Sobic002G309600 Sobic003G372700--Sobic003G280800 Sobic003G372700--Sobic001G474600 Sobic007G217000--Sobic001G114000 Sobic007G217000--Sobic008G047800 Sobic007G217000--Sobic009G166300 Sobic001G155000 Sobic001G155000 Sobic007G217000--Sobic001G155000 Sobic007G217000--Sobic001G474600 Sobic007G217000--Sobic007G011300 Sobic007G118600 Sobic007G118600 Sobic007G217000--Sobic007G118600 Sobic002G310200 Sobic002G310200 Sobic007G217000--Sobic002G310200 Sobic004G067700 Sobic004G067700 Sobic007G217000--Sobic004G067700 Sobic007G096000--Sobic003G280800 Sobic003G445400 Sobic003G445400 Sobic007G096000--Sobic003G445400 Sobic004G039700 Sobic004G039700 Sobic007G096000--Sobic004G039700 Sobic009G126400 Sobic009G126400 Sobic007G096000--Sobic009G126400 Sobic003G084900 Sobic003G084900 Sobic007G096000--Sobic003G084900 Sobic007G096000--Sobic001G474600 Sobic001G222500 Sobic001G222500 Sobic007G096000--Sobic001G222500 Sobic007G096000--Sobic002G310200 Sobic009G000500 Sobic009G000500 Sobic007G096000--Sobic009G000500 Sobic007G207000--Sobic001G125200 Sobic007G207000--Sobic001G474600 Sobic003G101400 Sobic003G101400 Sobic007G207000--Sobic003G101400 Sobic007G207000--Sobic009G191000 Sobic001G196500 Sobic001G196500 Sobic007G207000--Sobic001G196500 Sobic001G540400 Sobic001G540400 Sobic007G207000--Sobic001G540400 Sobic004G351100 Sobic004G351100 Sobic007G207000--Sobic004G351100 Sobic007G207000--Sobic002G309600 Sobic001G050200 Sobic001G050200 Sobic007G207000--Sobic001G050200 Sobic002G008900 Sobic002G008900 Sobic009G191000--Sobic002G008900 Sobic002G411600 Sobic002G411600 Sobic009G191000--Sobic002G411600 Sobic003G422500 Sobic003G422500 Sobic009G191000--Sobic003G422500 Sobic009G053900 Sobic009G053900 Sobic009G191000--Sobic009G053900 Sobic001G289600 Sobic001G289600 Sobic009G191000--Sobic001G289600 Sobic003G313500 Sobic003G313500 Sobic009G191000--Sobic003G313500 Sobic010G247800 Sobic010G247800 Sobic009G191000--Sobic010G247800 Sobic004G034900 Sobic004G034900 Sobic009G191000--Sobic004G034900 Sobic001G365900 Sobic001G365900 Sobic009G191000--Sobic001G365900 Sobic001G241200--Sobic007G117400 Sobic001G241200--Sobic005G112300 Sobic004G065100 Sobic004G065100 Sobic001G241200--Sobic004G065100 Sobic001G241200--Sobic002G309600 Sobic005G008800 Sobic005G008800 Sobic001G241200--Sobic005G008800 Sobic008G009700 Sobic008G009700 Sobic001G241200--Sobic008G009700 Sobic001G154900 Sobic001G154900 Sobic001G241200--Sobic001G154900 Sobic001G241200--Sobic003G119000 Sobic001G241200--Sobic001G540400
Octagon: transcription factors


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